AT2G40095

regulation of endocannabinoid signaling pathway

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
16742896 .. 16745152
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40095.1

Sequence Viewer

Length: 630 bp
ATGGGTTTTAGCAAAGAAGAGATTAGTAAAACCAGAAAGCTTTGGTCATCTCTATGGAGAGGAATCAAAACTATATTCGTTTTGTTCACAATGTTCTTCTCTTTTCTCCTTGTCTCTGCTCCTATCTTCCTCGCCGTCGCCGATGCTCTCCTCCCTTCCGCTCTCCTCCACCGCTTCTCTTCGCCGGCGACTCTCTCTTCTCATCTCACCAACTACGATTTCCGTCACTCCCTCATCGATATTCCTTTAATCTCAATCATTAGATCCGCTGTTATACTCTGTGTTTATGGACTCTGTGACGGACCAAAACTATCGAGAGGACCGTATCTGACAATAACAATGATTTGTTCAATATCTTCTCTAATCTACGTTTCGTTAAAAGCTGCGTTTGTGTTCGGTGAGCCAGCGATCGGAGACGGAGGAGGAAACTACTTCAGAGCGGCGGAAGTGGCTCTGTTTCTATGCTCGTCAGTCTTAGCCATAGGTCACATCGTTGTGGCTTATCGAACAAGTTGTAGAGAAAGAAAAAAGCTTCTCGTCTTCAAAATCGACATTGAAGCCGTTTCGGCTTGTAAAAACGTGTACCCGAGATACCAAAAGATCTTATTACAACAAGAGAGACTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

209

Amino Acids

23.29

Weight (kDa)

9.55

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 161, 440
AciI CCGC 5 cut(s) 159, 172, 267, 440, 443
AclWI GGATC 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 418
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 579
AgsI TTSAA 3 cut(s) 351, 544, 557
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 40, 383, 532
AluI AGCT 3 cut(s) 40, 383, 532
Alw26I GTCTC 3 cut(s) 118, 408, 613
AlwI GGATC 1 cut(s) 258
Ama87I CYCGRG 1 cut(s) 586
ApeKI GCWGC 1 cut(s) 383
AspS9I GGNCC 2 cut(s) 302, 320
AsuHPI GGTGA 2 cut(s) 199, 410
AvaI CYCGRG 1 cut(s) 586
AvaII GGWCC 2 cut(s) 302, 320
BbsI GAAGAC 1 cut(s) 532
BbvI GCAGC 1 cut(s) 370
BceAI ACGGC 2 cut(s) 119, 545
BcoDI GTCTC 3 cut(s) 118, 408, 613
BglI GCCNNNNNGGC 1 cut(s) 566
BglII AGATCT 1 cut(s) 600
BisI GCNGC 2 cut(s) 384, 441
BlsI GCNGC 2 cut(s) 385, 442
Bme18I GGWCC 2 cut(s) 302, 320
BmeT110I CYCGRG 1 cut(s) 586
BmgT120I GGNCC 2 cut(s) 302, 320
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 532
Bsa29I ATCGAT 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse118I RCCGGY 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 410
BseRI GAGGAG 3 cut(s) 140, 155, 435
BseXI GCAGC 1 cut(s) 370
Bsh1285I CGRYCG 1 cut(s) 411
BshVI ATCGAT 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 586
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 3 cut(s) 118, 408, 613
BsmBI CGTCTC 1 cut(s) 408
BsoBI CYCGRG 1 cut(s) 586
Bsp143I GATC 3 cut(s) 263, 408, 600
BspACI CCGC 5 cut(s) 159, 172, 267, 440, 443
BspDI ATCGAT 1 cut(s) 237
BspPI GGATC 1 cut(s) 258
BsrBI CCGCTC 2 cut(s) 161, 440
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssMI GATC 3 cut(s) 263, 408, 600
Bst4CI ACNGT 1 cut(s) 324
Bst6I CTCTTC 3 cut(s) 12, 184, 202
BstC8I GCNNGC 2 cut(s) 186, 405
BstDEI CTNAG 1 cut(s) 475
BstKTI GATC 3 cut(s) 266, 411, 603
BstMAI GTCTC 3 cut(s) 118, 408, 613
BstMBI GATC 3 cut(s) 263, 408, 600
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 2 cut(s) 449, 566
BstV1I GCAGC 1 cut(s) 370
BstV2I GAAGAC 1 cut(s) 532
BstX2I RGATCY 2 cut(s) 263, 600
BstYI RGATCY 2 cut(s) 263, 600
Bsu15I ATCGAT 1 cut(s) 237
BsuTUI ATCGAT 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 186, 405
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 302, 320
ClaI ATCGAT 1 cut(s) 237
Csp6I GTAC 1 cut(s) 583
CviJI RGCY 9 cut(s) 40, 383, 403, 452, 479, 500, 532, 560, 569
CviKI_1 RGCY 9 cut(s) 40, 383, 403, 452, 479, 500, 532, 560, 569
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 1 cut(s) 475
DpnI GATC 3 cut(s) 265, 410, 602
DpnII GATC 3 cut(s) 263, 408, 600
Eam1104I CTCTTC 3 cut(s) 12, 184, 202
EarI CTCTTC 3 cut(s) 12, 184, 202
EciI GGCGGA 1 cut(s) 458
Eco47I GGWCC 2 cut(s) 302, 320
Eco57I CTGAAG 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 586
Esp3I CGTCTC 1 cut(s) 408
FaiI YATR 6 cut(s) 55, 74, 275, 288, 463, 482
Fnu4HI GCNGC 2 cut(s) 384, 441
Fsp4HI GCNGC 2 cut(s) 384, 441
GluI GCNGC 2 cut(s) 384, 441
HapII CCGG 1 cut(s) 185
HindIII AAGCTT 2 cut(s) 38, 530
HinfI GANTC 4 cut(s) 63, 190, 291, 621
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 199, 410
Hpy166II GTNNAC 2 cut(s) 87, 583
Hpy188I TCNGA 3 cut(s) 330, 413, 437
Hpy188III TCNNGA 1 cut(s) 315
Hpy8I GTNNAC 2 cut(s) 87, 583
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 2 cut(s) 369, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 566
HpyF3I CTNAG 1 cut(s) 475
HpySE526I ACGT 2 cut(s) 369, 579
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
Kzo9I GATC 3 cut(s) 263, 408, 600
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 3 cut(s) 46, 198, 417
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 1 cut(s) 133
MaeII ACGT 2 cut(s) 369, 579
MaeIII GTNAC 3 cut(s) 224, 296, 485
MalI GATC 3 cut(s) 265, 410, 602
MbiI CCGCTC 2 cut(s) 161, 440
MboI GATC 3 cut(s) 263, 408, 600
MboII GAAGA 7 cut(s) 29, 88, 118, 171, 189, 348, 532
MflI RGATCY 2 cut(s) 263, 600
MlyI GAGTC 3 cut(s) 184, 285, 615
MnlI CCTC 8 cut(s) 53, 140, 161, 176, 242, 311, 413, 416
MreI CGCCGGCG 1 cut(s) 184
MroNI GCCGGC 1 cut(s) 184
MseI TTAA 2 cut(s) 248, 377
MslI CAYNNNNRTG 2 cut(s) 52, 494
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 449, 566
NaeI GCCGGC 1 cut(s) 186
NdeII GATC 3 cut(s) 263, 408, 600
NgoMIV GCCGGC 1 cut(s) 184
NmuCI GTSAC 3 cut(s) 224, 296, 485
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 320
PdiI GCCGGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 63
PkrI GCNGC 2 cut(s) 385, 442
Ple19I CGATCG 1 cut(s) 411
PleI GAGTC 3 cut(s) 184, 285, 615
PpsI GAGTC 3 cut(s) 184, 285, 615
PspPI GGNCC 2 cut(s) 302, 320
PsuI RGATCY 2 cut(s) 263, 600
PvuI CGATCG 1 cut(s) 411
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
RseI CAYNNNNRTG 2 cut(s) 52, 494
SaqAI TTAA 2 cut(s) 248, 377
SatI GCNGC 2 cut(s) 384, 441
Sau3AI GATC 3 cut(s) 263, 408, 600
Sau96I GGNCC 2 cut(s) 302, 320
SchI GAGTC 3 cut(s) 184, 285, 615
SetI ASST 6 cut(s) 42, 372, 385, 487, 534, 582
SfaNI GCATC 1 cut(s) 133
SgrAI CRCCGGYG 1 cut(s) 184
SinI GGWCC 2 cut(s) 302, 320
SmiMI CAYNNNNRTG 2 cut(s) 52, 494
SsiI CCGC 5 cut(s) 159, 172, 267, 440, 443
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 2 cut(s) 372, 582
TaqI TCGA 4 cut(s) 237, 314, 505, 549
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 2 cut(s) 248, 377
Tru9I TTAA 2 cut(s) 248, 377
TseFI GTSAC 3 cut(s) 224, 296, 485
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 3 cut(s) 224, 296, 485
TspGWI ACGGA 3 cut(s) 212, 315, 432
VpaK11BI GGWCC 2 cut(s) 302, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.