Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006186

Physical Location & Seq

Genomic Coordinates Forward (+)

20736508 .. 20738967

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTTTGATTAGCAAAGAAGAGATAAGCAAAACAAGAAGATATTCATCTTCTCTTTGGAGAGGTATCAAAACGATCTTTGTTCTCTTCACTATGTTTCTCTCTTTCATCATCTTTTCTGCTCCGATCTTCCTCGCCGTCGCCGACGCCGTCCTCCCCTCCGCAATCCTCTCATCCTCCTCACCCTCCCTCAACCGCCTATCTCCTTCTAGTTTTCCGGCGACGATTTATTCTTACCTCAGTAACTACGATTTCCGTTACTCTCTCATCGACATACCTCTCATCTCCATAATTAGATCTGCCATTATACTATGCGTTTACGGGCTTTGTGACGGACCAAAGTTATCAAGGGGACCATATCTGACAATAACGATGATATGCTCGATATCTTCACTGATATACGTATCGTTCAAGGCAGCAATTGTATTCGGAGAGCCAGTGATCGGAGGATATTTCCGAACAGAGGAAATGGCTCTCTTTCTATGTTCTTGGATCTTAGCCATCGGTCACATCGTTGTGGCGTACCGTACAAGTTGTAGAGAGAGACGAAAGCTCCTAGTCTTCAAAATCGACATCGAATCCGTAAGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MENTAL

Protein Analysis

198

Amino Acids

22.09

Weight (kDa)

9.28

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40095 AT2G40095 AT2G40095 AT3G55880 AT3G55880 AT3G55880 AT3G55880
fragaria_vesca	FvH4_7g24390
malus_domestica	MD01G1152300.v1.1 MD07G1221300.v1.1
prunus_persica	Prupe.2G249300_v2.0.a1
pyrus_communis	pycom01g17000 pycom07g19990
rosa_chinensis	RchiOBHm_Chr1g0370091
rosa_laevigata	RLG00000027075
rosa_multiflora	Rmu_sc0005056.1_g000007 Rmu_sc0005056.1_g000008
rosa_roxburghii	Rroxscaffold_4G00286830 Rroxscaffold_4G00287200
rosa_rugosa	Rorug01G0353700 Rorug01G0353800 Rorug01G0353900
rosa_samantha	Rh1AG362500 Rh1BG325700 Rh1CG339000 Rh1DG356200
rosa_wichuraiana	Rw1G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	162, 196
AclWI	GGATC	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	524, 529
AfiI	CCNNNNNNNGG	2 cut(s)	443, 463
AgsI	TTSAA	2 cut(s)	412, 565
AluBI	AGCT	1 cut(s)	553
AluI	AGCT	1 cut(s)	553
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	1 cut(s)	500
ApeKI	GCWGC	1 cut(s)	416
Asp700I	GAANNNNTTC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	335, 353
AsuHPI	GGTGA	1 cut(s)	174
AvaII	GGWCC	2 cut(s)	335, 353
BbsI	GAAGAC	1 cut(s)	553
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	2 cut(s)	122, 134
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	2 cut(s)	210, 557
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme18I	GGWCC	2 cut(s)	335, 353
BmgT120I	GGNCC	2 cut(s)	335, 353
BmiI	GGNNCC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	553
BsaAI	YACGTR	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	147
BsaXI	ACNNNNNCTCC	4 cut(s)	423, 453, 537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 463
Bse1I	ACTGG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	46
BseGI	GGATG	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	443, 463
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	443, 463
BsmAI	GTCTC	1 cut(s)	538
BsmBI	CGTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	75, 126, 296, 441, 492
BspACI	CCGC	2 cut(s)	162, 196
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	437
BssMI	GATC	5 cut(s)	75, 126, 296, 441, 492
BssNI	GRCGYC	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	2 cut(s)	15, 92
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	239, 496
BstF5I	GGATG	1 cut(s)	173
BstKTI	GATC	5 cut(s)	78, 129, 299, 444, 495
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	5 cut(s)	75, 126, 296, 441, 492
BstSNI	TACGTA	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	553
BstX2I	RGATCY	2 cut(s)	296, 492
BstYI	RGATCY	2 cut(s)	296, 492
BtsCI	GGATG	1 cut(s)	173
BtsIMutI	CAGTG	2 cut(s)	392, 444
Cfr13I	GGNCC	2 cut(s)	335, 353
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	523, 528
CviJI	RGCY	5 cut(s)	325, 436, 473, 500, 553
CviKI_1	RGCY	5 cut(s)	325, 436, 473, 500, 553
CviQI	GTAC	2 cut(s)	523, 528
DdeI	CTNAG	2 cut(s)	239, 496
DpnI	GATC	5 cut(s)	77, 128, 298, 443, 494
DpnII	GATC	5 cut(s)	75, 126, 296, 441, 492
Eam1104I	CTCTTC	2 cut(s)	15, 92
EarI	CTCTTC	2 cut(s)	15, 92
Eco105I	TACGTA	1 cut(s)	403
Eco32I	GATATC	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	335, 353
EcoRV	GATATC	1 cut(s)	387
Esp3I	CGTCTC	1 cut(s)	538
FaiI	YATR	9 cut(s)	95, 275, 290, 308, 313, 358, 379, 400, 484
FaqI	GGGAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	2 cut(s)	210, 557
GluI	GCNGC	1 cut(s)	417
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	319, 590
Hpy188I	TCNGA	5 cut(s)	126, 363, 431, 446, 458
Hpy8I	GTNNAC	2 cut(s)	319, 590
Hpy99I	CGWCG	3 cut(s)	143, 149, 226
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	1 cut(s)	402
HpyF3I	CTNAG	2 cut(s)	239, 496
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	147
Kzo9I	GATC	5 cut(s)	75, 126, 296, 441, 492
LmnI	GCTCC	2 cut(s)	127, 558
LpnPI	CCDG	2 cut(s)	231, 450
Lsp1109I	GCAGC	1 cut(s)	428
MaeI	CTAG	2 cut(s)	210, 557
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	4 cut(s)	242, 257, 329, 506
MalI	GATC	5 cut(s)	77, 128, 298, 443, 494
MboI	GATC	5 cut(s)	75, 126, 296, 441, 492
MboII	GAAGA	7 cut(s)	32, 42, 51, 79, 121, 381, 553
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	2 cut(s)	296, 492
MluCI	AATT	2 cut(s)	291, 420
MroXI	GAANNNNTTC	1 cut(s)	43
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	420
NdeII	GATC	5 cut(s)	75, 126, 296, 441, 492
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	2 cut(s)	329, 506
PcsI	WCGNNNNNNNCGW	3 cut(s)	141, 147, 510
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	578
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	418
Ppu21I	YACGTR	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	335, 353
PsuI	RGATCY	2 cut(s)	296, 492
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	524, 529
RsaNI	GTAC	2 cut(s)	523, 528
RseI	CAYNNNNRTG	1 cut(s)	515
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	5 cut(s)	75, 126, 296, 441, 492
Sau96I	GGNCC	2 cut(s)	335, 353
SetI	ASST	5 cut(s)	67, 240, 280, 405, 555
SinI	GGWCC	2 cut(s)	335, 353
SmiMI	CAYNNNNRTG	1 cut(s)	515
SnaBI	TACGTA	1 cut(s)	403
Sse9I	AATT	2 cut(s)	291, 420
SsiI	CCGC	2 cut(s)	162, 196
SspMI	CTAG	2 cut(s)	210, 557
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	4 cut(s)	270, 383, 570, 576
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	2 cut(s)	291, 420
TfiI	GAWTC	1 cut(s)	578
TscAI	CASTG	2 cut(s)	399, 444
TseFI	GTSAC	2 cut(s)	329, 506
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	2 cut(s)	329, 506
TspDTI	ATGAA	2 cut(s)	36, 97
TspGWI	ACGGA	3 cut(s)	245, 348, 571
TspRI	CASTG	2 cut(s)	399, 444
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	335, 353
XmnI	GAANNNNTTC	1 cut(s)	43
XspI	CTAG	2 cut(s)	210, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.