FvH4_7g24390

regulation of endocannabinoid signaling pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006186
Physical Location & Seq
Reverse (-)
18834720 .. 18837432
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24390.t1

Sequence Viewer

Length: 630 bp
ATGGGTTTTATATTGAAGGAGGAGAAGTCCAAGAAGGTTCTCAGGGGCGTGAAGACTGTGTTCTTCTTGATCACCATGTTGATCTCTCTGCTTCTGTTCTCGGCGCCGATTCTTCTCGTCATCGCCGATACGCTTCTCCCCTCGGCGCTTCTCTCGGCTTCTTCCTCCGCCTCCTTCTCCCTCCAAAATCTCTCTTCCCATTTTAGCAACTACGATTTCCGGTACTCGCTCGTCGATATTCCTCTCATCTCCATTATAAGATCCGCCGTCATATTCTGTGTGTATAGCTTCTGCGACGGGCCGGGACTTTCACACGGGCCCTATTTAGGGATCACGACGATGTGCTCTGTTCTGTCACTTGTGTTTGTTTCGTTCAAGGCTTCGTTTGTGTTCGGTGCTCCGGCGGAGCAAGGAGGCGAGTATTTGAGAGCCTCCGAGGTAGCTCTGTTCATATGCTCGTTTGGTTTGGCCGTCGGGCATATTGTGGTGGCGTATAGGACGAGTTGCAGAGAGAGAAGGAAGCTTTGGGTTTACAAAATTGACATCGAAGCTATTTCAGCTTGCAAAAATGGGTTTCCGAGGTACCAGAAGAAACTTCAAGAAGTCGAAAAGGTGAAGTCATTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MENTAL

Protein Analysis

210

Amino Acids

23.09

Weight (kDa)

9.25

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
Acc65I GGTACC 1 cut(s) 582
AccB1I GGYRCC 2 cut(s) 103, 582
AciI CCGC 3 cut(s) 168, 264, 404
AclWI GGATC 2 cut(s) 255, 338
AcoI YGGCCR 1 cut(s) 468
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 2 cut(s) 224, 584
AfiI CCNNNNNNNGG 2 cut(s) 326, 327
AgsI TTSAA 3 cut(s) 16, 376, 599
AjuI GAANNNNNNNTTGG 2 cut(s) 508, 540
AluBI AGCT 5 cut(s) 288, 443, 523, 551, 560
AluI AGCT 5 cut(s) 288, 443, 523, 551, 560
Alw21I GWGCWC 2 cut(s) 347, 400
AlwI GGATC 2 cut(s) 255, 338
AoxI GGCC 3 cut(s) 299, 317, 468
ApaI GGGCCC 1 cut(s) 321
Asp718I GGTACC 1 cut(s) 582
AspLEI GCGC 2 cut(s) 106, 148
AspS9I GGNCC 3 cut(s) 299, 317, 318
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 64, 625
BaeGI GKGCMC 1 cut(s) 321
BanI GGYRCC 2 cut(s) 103, 582
BanII GRGCYC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 347, 400
BceAI ACGGC 2 cut(s) 251, 455
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 1 cut(s) 303
BfoI RGCGCY 2 cut(s) 107, 149
Bme1390I CCNGG 1 cut(s) 303
BmgT120I GGNCC 3 cut(s) 299, 317, 318
BmiI GGNNCC 3 cut(s) 105, 319, 584
BmrFI CCNGG 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 141, 435, 578
BsaWI WCCGGW 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 327
BseDI CCNNGG 3 cut(s) 141, 435, 578
BseLI CCNNNNNNNGG 2 cut(s) 326, 327
BseMII CTCAG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 321
BshFI GGCC 3 cut(s) 301, 319, 470
BshNI GGYRCC 2 cut(s) 103, 582
BsiHKAI GWGCWC 2 cut(s) 347, 400
BsiSI CCGG 3 cut(s) 220, 302, 401
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 326, 327
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 3 cut(s) 301, 319, 470
Bsp120I GGGCCC 1 cut(s) 317
Bsp1286I GDGCHC 3 cut(s) 321, 347, 400
Bsp143I GATC 4 cut(s) 69, 81, 260, 330
BspACI CCGC 3 cut(s) 168, 264, 404
BspANI GGCC 3 cut(s) 301, 319, 470
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 3 cut(s) 105, 319, 584
BspPI GGATC 2 cut(s) 255, 338
BspT107I GGYRCC 2 cut(s) 103, 582
BssECI CCNNGG 3 cut(s) 141, 435, 578
BssMI GATC 4 cut(s) 69, 81, 260, 330
BssNI GRCGYC 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 1 cut(s) 41
BstH2I RGCGCY 2 cut(s) 107, 149
BstHHI GCGC 2 cut(s) 106, 148
BstKTI GATC 4 cut(s) 72, 84, 263, 333
BstMBI GATC 4 cut(s) 69, 81, 260, 330
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstSCI CCNGG 1 cut(s) 301
BstSLI GKGCMC 1 cut(s) 321
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 3 cut(s) 301, 319, 470
BtgZI GCGATG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 562
CfoI GCGC 2 cut(s) 106, 148
Cfr13I GGNCC 3 cut(s) 299, 317, 318
Csp6I GTAC 2 cut(s) 223, 583
CviAII CATG 1 cut(s) 76
CviQI GTAC 2 cut(s) 223, 583
DdeI CTNAG 1 cut(s) 41
DinI GGCGCC 1 cut(s) 105
DpnI GATC 4 cut(s) 71, 83, 262, 332
DpnII GATC 4 cut(s) 69, 81, 260, 330
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EciI GGCGGA 3 cut(s) 157, 253, 419
Eco24I GRGCYC 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 321
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
FaeI CATG 1 cut(s) 79
FaqI GGGAC 1 cut(s) 318
FatI CATG 1 cut(s) 75
FauNDI CATATG 1 cut(s) 452
FbaI TGATCA 1 cut(s) 69
FriOI GRGCYC 1 cut(s) 321
GlaI GCGC 2 cut(s) 105, 147
HaeII RGCGCY 2 cut(s) 107, 149
HaeIII GGCC 3 cut(s) 301, 319, 470
HapII CCGG 3 cut(s) 220, 302, 401
HhaI GCGC 2 cut(s) 106, 148
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 2 cut(s) 104, 146
HinP1I GCGC 2 cut(s) 104, 146
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 1 cut(s) 109
HpaII CCGG 3 cut(s) 220, 302, 401
HphI GGTGA 2 cut(s) 64, 625
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 2 cut(s) 436, 579
Hpy188III TCNNGA 3 cut(s) 67, 334, 599
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 4 cut(s) 236, 299, 340, 476
HpyAV CCTTC 4 cut(s) 10, 28, 184, 510
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 507, 564
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 2 cut(s) 104, 146
KasI GGCGCC 1 cut(s) 103
KpnI GGTACC 1 cut(s) 586
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 4 cut(s) 69, 81, 260, 330
LmnI GCTCC 2 cut(s) 403, 406
LpnPI CCDG 5 cut(s) 28, 233, 315, 414, 599
MaeIII GTNAC 1 cut(s) 354
MalI GATC 4 cut(s) 71, 83, 262, 332
MboI GATC 4 cut(s) 69, 81, 260, 330
MboII GAAGA 6 cut(s) 55, 64, 104, 153, 186, 601
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 3 cut(s) 321, 347, 400
MluCI AATT 1 cut(s) 537
Mly113I GGCGCC 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 338
MspI CCGG 3 cut(s) 220, 302, 401
MspR9I CCNGG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 557
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 1 cut(s) 303
NdeI CATATG 1 cut(s) 452
NdeII GATC 4 cut(s) 69, 81, 260, 330
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 3 cut(s) 105, 319, 584
NmeAIII GCCGAG 3 cut(s) 80, 122, 134
NmuCI GTSAC 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 1 cut(s) 109
PluTI GGCGCC 1 cut(s) 107
PsiI TTATAA 1 cut(s) 257
PspN4I GGNNCC 3 cut(s) 105, 319, 584
PspOMI GGGCCC 1 cut(s) 317
PspPI GGNCC 3 cut(s) 299, 317, 318
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 2 cut(s) 224, 584
RsaNI GTAC 2 cut(s) 223, 583
RseI CAYNNNNRTG 1 cut(s) 338
Sau3AI GATC 4 cut(s) 69, 81, 260, 330
Sau96I GGNCC 3 cut(s) 299, 317, 318
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 3 cut(s) 321, 347, 400
SetI ASST 9 cut(s) 39, 290, 441, 445, 525, 553, 562, 584, 615
SfoI GGCGCC 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 1 cut(s) 537
SsiI CCGC 3 cut(s) 168, 264, 404
SspDI GGCGCC 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 3 cut(s) 234, 546, 606
TasI AATT 1 cut(s) 537
TfiI GAWTC 1 cut(s) 109
TseFI GTSAC 1 cut(s) 354
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.