Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006186

Physical Location & Seq

Genomic Coordinates Reverse (-)

26087697 .. 26091243

Gene Structure 3547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1152300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGTTTTTTGAAGGAAGAGAAATCGAAGAGGGTTCTGAGGGGGGTTAAGACTGTGTTTTTCTTGATTACTATGTTGATTTCTCTGCTGCTGTTTTCGGCTCCGATTCTGCTTGTGATTGCCGATACGCTTGTTCCTTCGGCTATACTTTCTGCCTCTTCGTCTTCTTCTTTGATTTCTTTTGAAACGCTGTCGTCCCATTTCAATAACTACGATTTTCGATCTTCCCTCGTCGATATTCCGTTGATTTCCATCATAAGATCAGCTGTCATATTTTGCGTTTACAGCTTCTGTGATGGACGAAGGCTATCACACGGACCGTATTTGGGGATCACAACCATGTGTTCTGTTTTGTCCCTGGTGTTTGTTTCATTGAAGGCTTCGTTCGTGTTTGGGGCTTCCGGTGTGGAGAGGGCAGAGTATGTGAGAGCAACAGATATTGCTTTGTTCGTCTGCTCCCTGGTTTTGGCCGTTGGGCATATTGTGGTGGCATATAGAACAAGTTGCAGAGAAAGAAGGAAGCTTTGGGTGTACAAAATTGACATTGAAGCTGTTTCAGCTTGCAAAAATGGGTTCCCTAGGTACCAGAAGCTTCTGAAAGAAGAAAGAGTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MENTAL

Protein Analysis

206

Amino Acids

22.84

Weight (kDa)

9.51

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40095 AT2G40095 AT2G40095 AT3G55880 AT3G55880 AT3G55880 AT3G55880
fragaria_vesca	FvH4_7g24390
malus_domestica	MD01G1152300.v1.1 MD07G1221300.v1.1
prunus_persica	Prupe.2G249300_v2.0.a1
pyrus_communis	pycom01g17000 pycom07g19990
rosa_chinensis	RchiOBHm_Chr1g0370091
rosa_laevigata	RLG00000027075
rosa_multiflora	Rmu_sc0005056.1_g000007 Rmu_sc0005056.1_g000008
rosa_roxburghii	Rroxscaffold_4G00286830 Rroxscaffold_4G00287200
rosa_rugosa	Rorug01G0353700 Rorug01G0353800 Rorug01G0353900
rosa_samantha	Rh1AG362500 Rh1BG325700 Rh1CG339000 Rh1DG356200
rosa_wichuraiana	Rw1G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	582
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	468
AfaI	GTAC	2 cut(s)	533, 584
AfiI	CCNNNNNNNGG	2 cut(s)	326, 466
AgsI	TTSAA	5 cut(s)	13, 185, 205, 376, 548
AjnI	CCWGG	2 cut(s)	357, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
AluBI	AGCT	6 cut(s)	266, 288, 523, 551, 560, 592
AluI	AGCT	6 cut(s)	266, 288, 523, 551, 560, 592
AlwI	GGATC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	291
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	88
Asp718I	GGTACC	1 cut(s)	582
AspA2I	CCTAGG	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	317
AvrII	CCTAGG	1 cut(s)	578
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BanI	GGYRCC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	2 cut(s)	260, 290
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	2 cut(s)	359, 461
BfaI	CTAG	1 cut(s)	579
BisI	GCNGC	1 cut(s)	89
BlnI	CCTAGG	1 cut(s)	578
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	2 cut(s)	359, 461
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	3 cut(s)	102, 575, 584
BmrFI	CCNGG	2 cut(s)	359, 461
BpiI	GAAGAC	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	357, 459, 578
BsaWI	WCCGGW	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 466
Bse8I	GATNNNNATC	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	359, 461
BseDI	CCNNGG	3 cut(s)	357, 459, 578
BseJI	GATNNNNATC	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	326, 466
BseMII	CTCAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	75
BshFI	GGCC	1 cut(s)	470
BshNI	GGYRCC	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	2 cut(s)	181, 340
BslI	CCNNNNNNNGG	2 cut(s)	326, 466
BsmFI	GGGAC	2 cut(s)	181, 340
BsnI	GGCC	1 cut(s)	470
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	3 cut(s)	221, 260, 330
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	102, 575, 584
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	531
BssECI	CCNNGG	3 cut(s)	357, 459, 578
BssMI	GATC	3 cut(s)	221, 260, 330
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	2 cut(s)	359, 461
Bst4CI	ACNGT	2 cut(s)	55, 321
Bst6I	CTCTTC	3 cut(s)	12, 23, 163
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	38
BstKTI	GATC	3 cut(s)	224, 263, 333
BstMBI	GATC	3 cut(s)	221, 260, 330
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 557
BstNI	CCWGG	2 cut(s)	359, 461
BstSCI	CCNGG	2 cut(s)	357, 459
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	562
CaiI	CAGNNNCTG	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	317
CpoI	CGGWCCG	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	532, 583
CspI	CGGWCCG	1 cut(s)	317
CviAII	CATG	1 cut(s)	340
CviQI	GTAC	2 cut(s)	532, 583
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	3 cut(s)	223, 262, 332
DpnII	GATC	3 cut(s)	221, 260, 330
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	3 cut(s)	12, 23, 163
EarI	CTCTTC	3 cut(s)	12, 23, 163
Eco130I	CCWWGG	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	357, 459
EcoT14I	CCWWGG	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	1 cut(s)	343
FaiI	YATR	9 cut(s)	74, 146, 257, 272, 341, 423, 480, 493, 495
FaqI	GGGAC	2 cut(s)	181, 340
FatI	CATG	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	579
GluI	GCNGC	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	521, 590
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	402
Hpy166II	GTNNAC	2 cut(s)	283, 532
Hpy188I	TCNGA	3 cut(s)	39, 105, 597
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	283, 532
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	5 cut(s)	7, 147, 297, 370, 510
HpyCH4III	ACNGT	2 cut(s)	55, 321
HpyCH4V	TGCA	2 cut(s)	507, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 557
HpyF3I	CTNAG	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	343
KpnI	GGTACC	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	221, 260, 330
LmnI	GCTCC	2 cut(s)	106, 461
LpnPI	CCDG	6 cut(s)	344, 371, 415, 446, 473, 599
Lsp1109I	GCAGC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	579
MalI	GATC	3 cut(s)	223, 262, 332
MboI	GATC	3 cut(s)	221, 260, 330
MboII	GAAGA	7 cut(s)	29, 40, 150, 156, 159, 216, 614
MluCI	AATT	1 cut(s)	537
MnlI	CCTC	5 cut(s)	24, 33, 166, 239, 405
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	359, 461
MvaI	CCWGG	2 cut(s)	359, 461
MwoI	GCNNNNNNNGC	2 cut(s)	285, 557
NdeII	GATC	3 cut(s)	221, 260, 330
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	3 cut(s)	102, 575, 584
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	357, 459
PspGI	CCWGG	2 cut(s)	357, 459
PspN4I	GGNNCC	3 cut(s)	102, 575, 584
PspPI	GGNCC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	291
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	533, 584
RsaNI	GTAC	2 cut(s)	532, 583
RseI	CAYNNNNRTG	1 cut(s)	338
Rsr2I	CGGWCCG	1 cut(s)	317
RsrII	CGGWCCG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	221, 260, 330
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	359, 461
SetI	ASST	7 cut(s)	268, 290, 525, 553, 562, 584, 594
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	537
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	357, 459
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	2 cut(s)	55, 321
TaqI	TCGA	3 cut(s)	26, 220, 234
TasI	AATT	1 cut(s)	537
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	2 cut(s)	231, 330
VpaK11BI	GGWCC	1 cut(s)	317
XmaJI	CCTAGG	1 cut(s)	578
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.