Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005056.1

Orthogroup ID

OG0006186

Physical Location & Seq

Genomic Coordinates Forward (+)

24824 .. 25360

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005056.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgggttttatattgaaggaggagaagtcgaagaaggtcctgaggggcgtgaagactgtgttcttcttgatcaccatgttgatttctttgcttctgttctcggcgccgattcttctcgtcatcgccgatacgcttctcccctcggcgcttctctcggcttcttcctcggcctctctctctctcgaaactctctcttcccattttagcaactacgattttcggtactcgctcgttgatattcctctcatctccattataagatccgccgttatattctgtgtttatagcttctgcgacgggccgagactttcacacgggccctatttagggatcaccaccgtgtgctctgttctatccctcgtgtttgtttcgttcaaagcttcttttgtgttcggtgctccggtggtttcgggttcgggtgcggaggagcaaggaggagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MENTAL

Protein Analysis

147

Amino Acids

15.74

Weight (kDa)

7.72

Isoelectric Point (pI)

25.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40095 AT2G40095 AT2G40095 AT3G55880 AT3G55880 AT3G55880 AT3G55880
fragaria_vesca	FvH4_7g24390
malus_domestica	MD01G1152300.v1.1 MD07G1221300.v1.1
prunus_persica	Prupe.2G249300_v2.0.a1
pyrus_communis	pycom01g17000 pycom07g19990
rosa_chinensis	RchiOBHm_Chr1g0370091
rosa_laevigata	RLG00000027075
rosa_multiflora	Rmu_sc0005056.1_g000007 Rmu_sc0005056.1_g000008
rosa_roxburghii	Rroxscaffold_4G00286830 Rroxscaffold_4G00287200
rosa_rugosa	Rorug01G0353700 Rorug01G0353800 Rorug01G0353900
rosa_samantha	Rh1AG362500 Rh1BG325700 Rh1CG339000 Rh1DG356200
rosa_wichuraiana	Rw1G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	103
AciI	CCGC	2 cut(s)	264, 422
AclWI	GGATC	2 cut(s)	255, 338
AcyI	GRCGYC	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	326, 327
AgsI	TTSAA	2 cut(s)	16, 376
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	2 cut(s)	288, 380
AluI	AGCT	2 cut(s)	288, 380
Alw21I	GWGCWC	2 cut(s)	347, 400
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	255, 338
AoxI	GGCC	3 cut(s)	168, 299, 317
ApaI	GGGCCC	1 cut(s)	321
AspLEI	GCGC	2 cut(s)	106, 148
AspS9I	GGNCC	4 cut(s)	37, 299, 317, 318
AsuHPI	GGTGA	2 cut(s)	64, 325
AvaII	GGWCC	1 cut(s)	37
AxyI	CCTNAGG	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	321
BauI	CACGAG	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	347, 400
BceAI	ACGGC	1 cut(s)	251
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	298
BfoI	RGCGCY	2 cut(s)	107, 149
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	4 cut(s)	37, 299, 317, 318
BmiI	GGNNCC	2 cut(s)	105, 319
BpiI	GAAGAC	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	141, 165
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 327
Bse21I	CCTNAGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	141, 165
BseLI	CCNNNNNNNGG	2 cut(s)	326, 327
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	2 cut(s)	35, 440
BseSI	GKGCMC	1 cut(s)	321
BshFI	GGCC	3 cut(s)	170, 301, 319
BshNI	GGYRCC	1 cut(s)	103
BsiHKAI	GWGCWC	2 cut(s)	347, 400
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	326, 327
BsmAI	GTCTC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	170, 301, 319
Bsp120I	GGGCCC	1 cut(s)	317
Bsp1286I	GDGCHC	3 cut(s)	321, 347, 400
Bsp143I	GATC	3 cut(s)	69, 260, 330
BspACI	CCGC	2 cut(s)	264, 422
BspANI	GGCC	3 cut(s)	170, 301, 319
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	105, 319
BspPI	GGATC	2 cut(s)	255, 338
BspT107I	GGYRCC	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	141, 165
BssMI	GATC	3 cut(s)	69, 260, 330
BssNI	GRCGYC	1 cut(s)	104
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	58, 340
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	41
BstH2I	RGCGCY	2 cut(s)	107, 149
BstHHI	GCGC	2 cut(s)	106, 148
BstKTI	GATC	3 cut(s)	72, 263, 333
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	3 cut(s)	69, 260, 330
BstSLI	GKGCMC	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
Bsu36I	CCTNAGG	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	170, 301, 319
BtgZI	GCGATG	1 cut(s)	106
CfoI	GCGC	2 cut(s)	106, 148
Cfr13I	GGNCC	4 cut(s)	37, 299, 317, 318
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	6 cut(s)	158, 170, 288, 301, 319, 380
CviKI_1	RGCY	6 cut(s)	158, 170, 288, 301, 319, 380
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	41
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	3 cut(s)	71, 262, 332
DpnII	GATC	3 cut(s)	69, 260, 330
DraIII	CACNNNGTG	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	37
Eco81I	CCTNAGG	1 cut(s)	41
EcoO109I	RGGNCCY	2 cut(s)	37, 318
EcoT38I	GRGCYC	1 cut(s)	321
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
FaeI	CATG	1 cut(s)	79
FaiI	YATR	5 cut(s)	11, 77, 257, 272, 285
FatI	CATG	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	69
FriOI	GRGCYC	1 cut(s)	321
GlaI	GCGC	2 cut(s)	105, 147
HaeII	RGCGCY	2 cut(s)	107, 149
HaeIII	GGCC	3 cut(s)	170, 301, 319
HapII	CCGG	1 cut(s)	401
HhaI	GCGC	2 cut(s)	106, 148
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	2 cut(s)	104, 146
HinP1I	GCGC	2 cut(s)	104, 146
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	64, 325
Hpy188III	TCNNGA	3 cut(s)	40, 67, 182
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	2 cut(s)	10, 28
HpyCH4III	ACNGT	2 cut(s)	58, 340
HpyF3I	CTNAG	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	2 cut(s)	104, 146
KasI	GGCGCC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	69, 260, 330
LmnI	GCTCC	2 cut(s)	403, 427
LpnPI	CCDG	2 cut(s)	53, 414
MalI	GATC	3 cut(s)	71, 262, 332
MboI	GATC	3 cut(s)	69, 260, 330
MboII	GAAGA	6 cut(s)	43, 55, 64, 104, 153, 186
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	3 cut(s)	321, 347, 400
Mly113I	GGCGCC	1 cut(s)	104
MnlI	CCTC	9 cut(s)	13, 36, 151, 175, 181, 252, 368, 418, 428
MslI	CAYNNNNRTG	1 cut(s)	338
MspI	CCGG	1 cut(s)	401
NarI	GGCGCC	1 cut(s)	104
NdeII	GATC	3 cut(s)	69, 260, 330
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	105, 319
NmeAIII	GCCGAG	5 cut(s)	80, 122, 134, 146, 327
OliI	CACNNNNGTG	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	109
PluTI	GGCGCC	1 cut(s)	107
PpuMI	RGGWCCY	1 cut(s)	37
PsiI	TTATAA	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	105, 319
PspOMI	GGGCCC	1 cut(s)	317
PspPI	GGNCC	4 cut(s)	37, 299, 317, 318
PspPPI	RGGWCCY	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	338
Sau3AI	GATC	3 cut(s)	69, 260, 330
Sau96I	GGNCC	4 cut(s)	37, 299, 317, 318
SduI	GDGCHC	3 cut(s)	321, 347, 400
SetI	ASST	3 cut(s)	39, 290, 382
SfoI	GGCGCC	1 cut(s)	105
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	338
SsiI	CCGC	2 cut(s)	264, 422
SspDI	GGCGCC	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	58, 340
TaqI	TCGA	2 cut(s)	29, 183
TfiI	GAWTC	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.