pycom01g17000

regulation of endocannabinoid signaling pathway

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
16406953 .. 16408460
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g17000.2

Sequence Viewer

Length: 279 bp
ATGTGTTCTGTTGTGTCCCTGGTGTTTGTTTCATTGAAGGCTTCGTATGTGTTTGGGGCTTCCGGTGTGGAGAGGGCAGAGTATGTGAGAGCAACAGATATTGCTTTGTTCGTCTGCTCGCTGGTTTTGGCCGTTGGGCATATTGTGGTGGCGTATAGAACAAGTTGCAGAGAAAGAAGGAAGCTTTGGGTGTACAAAATTGACATTGAAGCTGTTTCAGCTTGCAAAAATGGGTTCCCTAGGTACCAGAAGCTTCTGAAAGAAGAAAGAGTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.39

Weight (kDa)

9.51

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 129
AfaI GTAC 2 cut(s) 194, 245
AgsI TTSAA 2 cut(s) 37, 209
AjnI CCWGG 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 4 cut(s) 184, 212, 221, 253
AluI AGCT 4 cut(s) 184, 212, 221, 253
AoxI GGCC 1 cut(s) 129
Asp718I GGTACC 1 cut(s) 243
AspA2I CCTAGG 1 cut(s) 239
AvrII CCTAGG 1 cut(s) 239
BanI GGYRCC 1 cut(s) 243
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 20
BfaI CTAG 1 cut(s) 240
BlnI CCTAGG 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 236, 245
BmrFI CCNGG 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 18, 239
BsaWI WCCGGW 1 cut(s) 62
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 18, 239
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 63
BsnI GGCC 1 cut(s) 131
Bsp1407I TGTACA 1 cut(s) 192
BspANI GGCC 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 236, 245
BspT107I GGYRCC 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 18, 239
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 119, 223
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 119, 223
Csp6I GTAC 2 cut(s) 193, 244
CviJI RGCY 7 cut(s) 41, 59, 131, 184, 212, 221, 253
CviKI_1 RGCY 7 cut(s) 41, 59, 131, 184, 212, 221, 253
CviQI GTAC 2 cut(s) 193, 244
EaeI YGGCCR 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
FaiI YATR 4 cut(s) 48, 84, 141, 156
FspBI CTAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 63
HindIII AAGCTT 2 cut(s) 182, 251
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 31, 171
HpyCH4V TGCA 2 cut(s) 168, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
KpnI GGTACC 1 cut(s) 247
LpnPI CCDG 5 cut(s) 5, 32, 76, 107, 260
MaeI CTAG 1 cut(s) 240
MboII GAAGA 1 cut(s) 275
MluCI AATT 1 cut(s) 198
MnlI CCTC 1 cut(s) 66
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 218
NlaIV GGNNCC 2 cut(s) 236, 245
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 236, 245
RsaI GTAC 2 cut(s) 194, 245
RsaNI GTAC 2 cut(s) 193, 244
ScrFI CCNGG 1 cut(s) 20
SetI ASST 5 cut(s) 186, 214, 223, 245, 255
SgeI CNNG 9 cut(s) 31, 32, 75, 130, 134, 174, 234, 252, 259
Sse9I AATT 1 cut(s) 198
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 239
TasI AATT 1 cut(s) 198
TatI WGTACW 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 21
XmaJI CCTAGG 1 cut(s) 239
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.