Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009831

Physical Location & Seq

Genomic Coordinates Reverse (-)

16821934 .. 16825160

Gene Structure 3227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGTTGTTCAAAATGCGTTCTTTTGTGGCTTTTGTGCTCCTTCTGAGCTGGTTCGGTTCGTGTTGTTCTCTCAAGGACCAAGCTGTAGATTTTCTCAAAAGTGAAGATAGTTTAAAGAAAGATCTATCGTCAGATGAAGATTCCACGTATTTGAAAGCTTTTGGATTTCACAGGAAAACACTTGTCCGTAACCCTTACAAAGACTTGCCTTCAAGAAAAGACCGCAAAAACCGTGTTGTGGCTGCAACTACAACACCATCATCATCCCCAGAACCTGCTCCAAAACATGTTTCAACTAAAGCTTCAACAGTTTCAGAGCCACAAAAGAGATCATCTACACAAGATGTTTCACCTTCTCCATCTGCGCCACTTGCAAACTCTCCCATTCCAAGAAACTCTCATTCTTCTGTTCCTTTAGTTGTTGGCTGCGTAGGCGGTGCTTTTTTTCTTCTCCTTGTAGCTACCGGTCTCTACTTTTTCACAAGTAAGGCCGGGAAAACTGTGAATCCTTGGCGTACTGGTCTTAGTGGACAACTTCAGAAAGTATTCGTTACTGGTATTCCTGTACTCAAAAGATCTGAGATTGAAGCTGCATGTGAAGATTTTAGTAATGTCATTGGATCTTGTCCCATTGGGAAGTTGTTCAAAGGAACATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACTACTACTGCCAAAGACTGGAAGGACAGTACAGAAATTCACTTCAGGAAGAAGATCGAAATGTTATCGAAGATCAACCACAAGAATTTTGCAAACCTTCTTGGTTATTGTGAAGAAAAGGAACCTTTCACCAGGATCTTGATCTTTGAGTATGCTCCAAATGGATCACTCTTTGAGCATTTACATTATAAAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGGATTAGCATATTGCCTTGACCATATGCACCAACTCAATCCACCTATAGCTCACACCAATCTCGTCTCATCATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTATCAGATTTCAGTTTCGGTTCATCTGAGACAGAGACTAACATCAACAACAACACAGTCATAGACACACACATCTCAGCCTTGAATCCAGAAGACAACATTTACAGCTTTGGTTTACTGTTATTCGAAATGATAACCGGGAAACTCATAGAATCCGTTAACAAACCTGACTCAGTAGATAGCTCGCTGGTTGATTTCTTAAGAGGAGAGACTCTAGCCAAAATGGTAGATCCAACACTGGAATCTTATGATGCCAAGATTGAGAATATAGGTGAAGTGATCAAATCATGCCTTAGGACTGACCCGAAAGAGAGACCTACAATGCAAGAAGTCACAGGATGGTTACGGGAGATCACGGGATTGTCACCGAACGATGCTACACCGAAATTGTCACCTCTTTGGTGGGCAGAGTTGGAGGTTTTGTCCACGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase_Tyr

Protein Analysis

489

Amino Acids

54.18

Weight (kDa)

6.34

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	195 - 450	5e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	197 - 449	1.5e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40270 AT2G40270 AT3G56050 AT3G56050
fragaria_vesca	FvH4_7g24950 FvH4_7g24950 FvH4_7g24950
malus_domestica	MD01G1156900.v1.1
prunus_persica	Prupe.2G254500_v2.0.a1
pyrus_communis	pycom01g17370
rosa_chinensis	RchiOBHm_Chr1g0370831
rosa_laevigata	RLG00000027005
rosa_multiflora	Rmu_sc0009474.1_g000013
rosa_roxburghii	Rroxscaffold_4G00286200
rosa_rugosa	Rorug01G0359900
rosa_samantha	Rh1AG369400 Rh1BG332800 Rh1BG332900 Rh1CG346500 Rh1DG364100
rosa_wichuraiana	Rw1G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	882
Acc36I	ACCTGC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	711
AciI	CCGC	3 cut(s)	223, 435, 913
AclWI	GGATC	4 cut(s)	628, 836, 865, 1259
AcsI	RAATTY	2 cut(s)	729, 778
AcuI	CTGAAG	3 cut(s)	521, 721, 992
AfaI	GTAC	3 cut(s)	517, 567, 724
AfiI	CCNNNNNNNGG	2 cut(s)	238, 711
AflII	CTTAAG	1 cut(s)	1234
AflIII	ACRYGT	1 cut(s)	286
AgeI	ACCGGT	1 cut(s)	464
AgsI	TTSAA	8 cut(s)	10, 154, 213, 294, 306, 587, 646, 1120
AjnI	CCWGG	1 cut(s)	824
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	6 cut(s)	473, 1000, 1058, 1064, 1238, 1342
AlwI	GGATC	4 cut(s)	628, 836, 865, 1259
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	3 cut(s)	242, 426, 590
ApoI	RAATTY	2 cut(s)	729, 778
AsiGI	ACCGGT	1 cut(s)	464
Asp700I	GAANNNNTTC	2 cut(s)	545, 641
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	493, 1174
AsuHPI	GGTGA	5 cut(s)	342, 814, 1319, 1392, 1419
AsuII	TTCGAA	1 cut(s)	1161
AvaII	GGWCC	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	1328
BbsI	GAAGAC	1 cut(s)	1134
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	229, 413, 577
BccI	CCATC	3 cut(s)	265, 367, 1368
BciT130I	CCWGG	1 cut(s)	826
BclI	TGATCA	1 cut(s)	1314
BcnI	CCSGG	2 cut(s)	493, 1174
BcoDI	GTCTC	6 cut(s)	473, 1000, 1058, 1064, 1238, 1342
BfaI	CTAG	1 cut(s)	1250
BfmI	CTRYAG	2 cut(s)	84, 975
BfrI	CTTAAG	1 cut(s)	1234
BfuAI	ACCTGC	1 cut(s)	283
BglII	AGATCT	2 cut(s)	121, 575
BisI	GCNGC	3 cut(s)	243, 427, 591
BlsI	GCNGC	3 cut(s)	244, 428, 592
Bme1390I	CCNGG	3 cut(s)	493, 826, 1174
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	3 cut(s)	493, 826, 1174
BmsI	GCATC	2 cut(s)	1276, 1399
BpiI	GAAGAC	1 cut(s)	1134
Bpu14I	TTCGAA	1 cut(s)	1161
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	2 cut(s)	493, 1174
BsaAI	YACGTR	1 cut(s)	147
BsaBI	GATNNNNATC	1 cut(s)	833
BsaI	GGTCTC	2 cut(s)	473, 1342
BsaJI	CCNNGG	2 cut(s)	509, 1461
BsaWI	WCCGGW	1 cut(s)	464
BsaXI	ACNNNNNCTCC	1 cut(s)	1442
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 711
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	4 cut(s)	523, 559, 716, 1278
Bse21I	CCTNAGG	1 cut(s)	1328
Bse3DI	GCAATG	1 cut(s)	933
Bse8I	GATNNNNATC	1 cut(s)	833
BseBI	CCWGG	1 cut(s)	826
BseDI	CCNNGG	2 cut(s)	509, 1461
BseGI	GGATG	2 cut(s)	263, 1379
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	2 cut(s)	238, 711
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	5 cut(s)	35, 570, 1053, 1125, 1221
BseNI	ACTGG	4 cut(s)	523, 559, 716, 1278
BseRI	GAGGAG	1 cut(s)	1254
BseXI	GCAGC	3 cut(s)	229, 413, 577
BshFI	GGCC	1 cut(s)	491
BshTI	ACCGGT	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	3 cut(s)	465, 492, 1173
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	238, 711
BsmAI	GTCTC	6 cut(s)	473, 1000, 1058, 1064, 1238, 1342
BsmBI	CGTCTC	1 cut(s)	1000
BsmFI	GGGAC	1 cut(s)	612
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	1 cut(s)	491
Bso31I	GGTCTC	2 cut(s)	473, 1342
Bsp119I	TTCGAA	1 cut(s)	1161
Bsp1286I	GDGCHC	1 cut(s)	39
BspACI	CCGC	3 cut(s)	223, 435, 913
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	5 cut(s)	36, 571, 1054, 1124, 1220
BspLI	GGNNCC	1 cut(s)	816
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	4 cut(s)	628, 836, 865, 1259
BspT104I	TTCGAA	1 cut(s)	1161
BspTI	CTTAAG	1 cut(s)	1234
BspTNI	GGTCTC	2 cut(s)	473, 1342
BsrDI	GCAATG	1 cut(s)	933
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	4 cut(s)	523, 559, 716, 1278
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	2 cut(s)	509, 1461
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	826
Bst4CI	ACNGT	6 cut(s)	233, 310, 502, 722, 1093, 1155
Bst6I	CTCTTC	1 cut(s)	1011
BstAFI	CTTAAG	1 cut(s)	1234
BstBAI	YACGTR	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	1161
BstC8I	GCNNGC	1 cut(s)	1220
BstDEI	CTNAG	7 cut(s)	44, 524, 579, 1062, 1111, 1207, 1328
BstDSI	CCRYGG	1 cut(s)	1461
BstF5I	GGATG	2 cut(s)	263, 1379
BstHHI	GCGC	1 cut(s)	367
BstMAI	GTCTC	6 cut(s)	473, 1000, 1058, 1064, 1238, 1342
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 432, 689
BstNI	CCWGG	1 cut(s)	826
BstNSI	RCATGY	2 cut(s)	290, 597
BstSCI	CCNGG	3 cut(s)	491, 824, 1172
BstSFI	CTRYAG	2 cut(s)	84, 975
BstV1I	GCAGC	3 cut(s)	229, 413, 577
BstV2I	GAAGAC	1 cut(s)	1134
BstX2I	RGATCY	5 cut(s)	121, 575, 620, 828, 1264
BstYI	RGATCY	5 cut(s)	121, 575, 620, 828, 1264
Bsu36I	CCTNAGG	1 cut(s)	1328
BsuRI	GGCC	1 cut(s)	491
BtgI	CCRYGG	1 cut(s)	1461
BtsCI	GGATG	2 cut(s)	263, 1379
BtsIMutI	CAGTG	1 cut(s)	1271
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	1220
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	3 cut(s)	516, 566, 723
CspAI	ACCGGT	1 cut(s)	464
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	3 cut(s)	287, 594, 1323
CviQI	GTAC	3 cut(s)	516, 566, 723
DdeI	CTNAG	7 cut(s)	44, 524, 579, 1062, 1111, 1207, 1328
DraI	TTTAAA	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	1011
EarI	CTCTTC	1 cut(s)	1011
Eco130I	CCWWGG	1 cut(s)	509
Eco31I	GGTCTC	2 cut(s)	473, 1342
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	3 cut(s)	521, 721, 992
Eco81I	CCTNAGG	1 cut(s)	1328
EcoRII	CCWGG	1 cut(s)	824
EcoT14I	CCWWGG	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	509
Esp3I	CGTCTC	1 cut(s)	1000
FaeI	CATG	3 cut(s)	290, 597, 1326
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	3 cut(s)	286, 593, 1322
FauNDI	CATATG	1 cut(s)	954
FbaI	TGATCA	1 cut(s)	1314
Fnu4HI	GCNGC	3 cut(s)	243, 427, 591
FokI	GGATG	2 cut(s)	250, 1386
Fsp4HI	GCNGC	3 cut(s)	243, 427, 591
FspBI	CTAG	1 cut(s)	1250
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	3 cut(s)	243, 427, 591
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	3 cut(s)	465, 492, 1173
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	3 cut(s)	290, 597, 1326
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	1 cut(s)	1195
HindII	GTYRAC	1 cut(s)	1195
HindIII	AAGCTT	2 cut(s)	156, 300
HinfI	GANTC	8 cut(s)	140, 505, 887, 1120, 1187, 1205, 1246, 1277
HpaI	GTTAAC	1 cut(s)	1195
HpaII	CCGG	3 cut(s)	465, 492, 1173
HphI	GGTGA	5 cut(s)	342, 814, 1319, 1392, 1419
Hpy166II	GTNNAC	4 cut(s)	530, 1151, 1195, 1461
Hpy188I	TCNGA	8 cut(s)	45, 133, 316, 540, 580, 892, 1042, 1063
Hpy188III	TCNNGA	4 cut(s)	213, 739, 832, 1124
Hpy8I	GTNNAC	4 cut(s)	530, 1151, 1195, 1461
HpyAV	CCTTC	5 cut(s)	50, 219, 363, 709, 800
HpyCH4III	ACNGT	6 cut(s)	233, 310, 502, 722, 1093, 1155
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	7 cut(s)	245, 374, 593, 785, 926, 958, 1360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 432, 689
HpyF3I	CTNAG	7 cut(s)	44, 524, 579, 1062, 1111, 1207, 1328
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	290, 597, 1326
HspAI	GCGC	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	1314
KspAI	GTTAAC	1 cut(s)	1195
LmnI	GCTCC	3 cut(s)	42, 283, 853
Lsp1109I	GCAGC	3 cut(s)	229, 413, 577
LweI	GCATC	2 cut(s)	1276, 1399
MaeI	CTAG	1 cut(s)	1250
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	6 cut(s)	188, 550, 1366, 1377, 1398, 1425
MflI	RGATCY	5 cut(s)	121, 575, 620, 828, 1264
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	4 cut(s)	729, 778, 921, 1421
MlyI	GAGTC	2 cut(s)	1199, 1240
MmeI	TCCRAC	2 cut(s)	1292, 1428
MnlI	CCTC	4 cut(s)	1012, 1232, 1440, 1444
MroXI	GAANNNNTTC	2 cut(s)	545, 641
MseI	TTAA	4 cut(s)	113, 917, 1194, 1235
MspCI	CTTAAG	1 cut(s)	1234
MspI	CCGG	3 cut(s)	465, 492, 1173
MspR9I	CCNGG	3 cut(s)	493, 826, 1174
Mva1269I	GAATGC	1 cut(s)	915
MvaI	CCWGG	1 cut(s)	826
MwoI	GCNNNNNNNGC	3 cut(s)	371, 432, 689
NciI	CCSGG	2 cut(s)	493, 1174
NdeI	CATATG	1 cut(s)	954
NlaIII	CATG	3 cut(s)	290, 597, 1326
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	3 cut(s)	1366, 1398, 1425
NspI	RCATGY	2 cut(s)	290, 597
NspV	TTCGAA	1 cut(s)	1161
PciI	ACATGT	1 cut(s)	286
PctI	GAATGC	1 cut(s)	915
PdmI	GAANNNNTTC	2 cut(s)	545, 641
PfeI	GAWTC	6 cut(s)	140, 505, 887, 1120, 1187, 1277
PflMI	CCANNNNNTGG	1 cut(s)	711
PinAI	ACCGGT	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	244, 428, 592
PleI	GAGTC	2 cut(s)	1199, 1240
PpsI	GAGTC	2 cut(s)	1199, 1240
Ppu21I	YACGTR	1 cut(s)	147
PscI	ACATGT	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	882
Psp6I	CCWGG	1 cut(s)	824
PspGI	CCWGG	1 cut(s)	824
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	5 cut(s)	121, 575, 620, 828, 1264
RsaI	GTAC	3 cut(s)	517, 567, 724
RsaNI	GTAC	3 cut(s)	516, 566, 723
SaqAI	TTAA	4 cut(s)	113, 917, 1194, 1235
SatI	GCNGC	3 cut(s)	243, 427, 591
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	1199, 1240
ScrFI	CCNGG	3 cut(s)	493, 826, 1174
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	2 cut(s)	1276, 1399
SfcI	CTRYAG	2 cut(s)	84, 975
SfuI	TTCGAA	1 cut(s)	1161
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	2 cut(s)	71, 1234
SmoI	CTYRAG	2 cut(s)	71, 1234
Sse9I	AATT	4 cut(s)	729, 778, 921, 1421
SsiI	CCGC	3 cut(s)	223, 435, 913
SspMI	CTAG	1 cut(s)	1250
StyD4I	CCNGG	3 cut(s)	491, 824, 1172
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	6 cut(s)	233, 310, 502, 722, 1093, 1155
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	3 cut(s)	750, 761, 1161
TasI	AATT	4 cut(s)	729, 778, 921, 1421
TatI	WGTACW	2 cut(s)	565, 722
TfiI	GAWTC	6 cut(s)	140, 505, 887, 1120, 1187, 1277
Tru1I	TTAA	4 cut(s)	113, 917, 1194, 1235
Tru9I	TTAA	4 cut(s)	113, 917, 1194, 1235
TscAI	CASTG	1 cut(s)	1278
TseFI	GTSAC	3 cut(s)	1366, 1398, 1425
TseI	GCWGC	3 cut(s)	242, 426, 590
Tsp45I	GTSAC	3 cut(s)	1366, 1398, 1425
TspDTI	ATGAA	2 cut(s)	150, 1047
TspGWI	ACGGA	2 cut(s)	176, 1180
TspRI	CASTG	1 cut(s)	1278
Van91I	CCANNNNNTGG	1 cut(s)	711
Vha464I	CTTAAG	1 cut(s)	1234
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	2 cut(s)	729, 778
XceI	RCATGY	2 cut(s)	290, 597
XmnI	GAANNNNTTC	2 cut(s)	545, 641
XspI	CTAG	1 cut(s)	1250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.