Rh1CG346500

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
62363808 .. 62367961
4154 bp
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UTR
Exon/CDS
Intron
Rh1CG346500.1

Sequence Viewer

Length: 1650 bp
ATGGGGATAATTCCTGGAGGGATCGGAGAGTTGAAGGAACTGGAGGTGTTAGACTTGGGATATAATAACTTCAGTGGAACACTTCCAGTAGACCTTCACAGTAATTTTTCATTGAGAATCCTGCTACTAGATAACAACAGGCTCCTTAGTATCTTATCTCCTGAGATTTATGCACTGGAGATGCTTTCCCAATATCAAGTCGACGAAAACCAACTTTCTGGTGCAACCAGAGAATCATCGTGCAATGAAAGATCCATTTCAAGGAACCTTGCTAATACTGAACACTCCTATCATGGGAGACAGCTGGGAGCAGCATCCCCTCCAAATCGTCCTAGCTTGGATCCTCCCAACGAACCGCCAAAGACAGAACCATCTGCTCCTACACCTGCACCTGCATCTTCACCTTCACCTTCACCTTCACCTTCACCTTCACCTTCTGTTCCAACTTCCCCACCAACCACATCTGCTTCTCCACCTTCAGTTTCCTCTCCTGGGCCTTCCCCCCAAGGAAGTCCCCCAAAGGAAAGTTCCAGTCATCGTGTTGCAATAATGGCTGGAGCCATAGGCGGTGGTGGTTTTCTTGTAATTTTAGTTATTGGGTTGTATTTCTATGGACGCAACAAGGTAGCTACTGTCAAACCTTGGGCCACAGGGTTAAGCGGGCAGCTTCAGAAAGCCTTTGTAACTGGTATTGCTTCTTTCGTAATGGAGAAAATTGATCTCTGTGTACCAAATCTTAAGAGATCGGAGATTCAAGCGGCTTGTGAAGATTTCAGTAATGTTATAGGTACTTCTTCACCGATGGGTACAGTGTACAAAGGAACATTATCCAGTGGTGTCGAAATTGCTGTGGCTTCTCTCGCAGCAACATCTGCCAGTGGTTGGGGCAACAATTTAGAGTTGCAGTTTAGGAAGAAGATCGACACATTATCGAAAGTGAACCACAAGAATTTTGTCAGCCTTATTGGATATTGCGAGGAAGAAGAGCCTTTCACTAGAATGATGGTTTTTGAATATGCTCCCAATGGCACACTTTTCGAGCATTTACACATAAAAGAAGCTGAGCACCTGGACTGGAGAATGCGAATGAGAATCTCAATGGGAATGACCTACTGCCTTGAGCATATGCACCAGCTGAAGCCGCGTATAGCTCACAACAACTTGACTTCTTCTGCCGTCCAGCTAACTGAGGATTATGCACCGAAGGTCTCAGAAGTCACTTTCTGGAATGAGATAGCTGAAGCCGAGAAACAATCATCTGGCTCAAGACTTTCTGATGCACAATCAACAAGCCTGGAAAGTAATGTGTACAGTTTTGGTGTAATTTTGTTTGAAATCGTGACAGGTAGACTCCCTTATTCAGTAGACAATGGCTCACTTGAAGATTGGGCTTCTGACTATGTGAGAGGGGAGCATCCCTTCAAGGGAATGGTTGATCCAACTCTAGAATCTTTCCAAGAGGAGCAGCTGGAGCGAATTGGAGAAGTAATAAGAATTTGTGTCCATCCTGACCCGAGACAAAGACCGCCAATCAGAGACGTCACTGCAAGGCTGAGAGAGATAACTGGACTTACACCTGATGCAGTATCCCCGAAACTCTCCACTCTTTGGTGGGCAGAACTTGAACTTATGTCTGCAGATGCAAGCTAG

Protein Analysis

549

Amino Acids

59.84

Weight (kDa)

5.3

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 267 - 518 4.6e-20 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 268 - 514 5.4e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 394, 400
AatII GACGTC 1 cut(s) 1542
Acc36I ACCTGC 2 cut(s) 394, 400
AccB7I CCANNNNNTGG 2 cut(s) 882, 1608
AccI GTMKAC 4 cut(s) 90, 201, 1348, 1365
AccII CGCG 1 cut(s) 1144
AciI CCGC 6 cut(s) 356, 567, 660, 758, 1142, 1526
AclWI GGATC 5 cut(s) 29, 246, 335, 348, 1430
AcsI RAATTY 2 cut(s) 949, 1494
AcuI CTGAAG 5 cut(s) 55, 462, 653, 1157, 1260
AcyI GRCGYC 1 cut(s) 1539
AfaI GTAC 5 cut(s) 729, 790, 808, 815, 1310
AfiI CCNNNNNNNGG 6 cut(s) 261, 294, 492, 882, 1424, 1608
AflII CTTAAG 1 cut(s) 737
AgsI TTSAA 8 cut(s) 34, 261, 755, 1013, 1334, 1382, 1423, 1625
AjnI CCWGG 4 cut(s) 13, 490, 1068, 1293
AjuI GAANNNNNNNTTGG 2 cut(s) 511, 543
Alw21I GWGCWC 1 cut(s) 1068
Alw26I GTCTC 4 cut(s) 292, 1213, 1510, 1530
AlwI GGATC 5 cut(s) 29, 246, 335, 348, 1430
Ama87I CYCGRG 1 cut(s) 1513
AoxI GGCC 2 cut(s) 494, 645
ApeKI GCWGC 4 cut(s) 311, 664, 863, 1465
ApoI RAATTY 2 cut(s) 949, 1494
AspS9I GGNCC 2 cut(s) 494, 645
AsuHPI GGTGA 7 cut(s) 393, 399, 405, 411, 417, 423, 789
AvaI CYCGRG 1 cut(s) 1513
BamHI GGATCC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 1068
BbvI GCAGC 4 cut(s) 323, 676, 875, 1477
BccI CCATC 4 cut(s) 379, 796, 997, 1512
BceAI ACGGC 1 cut(s) 1160
BcgI CGANNNNNNTGC 2 cut(s) 1018, 1052
BciT130I CCWGG 4 cut(s) 15, 492, 1070, 1295
BciVI GTATCC 1 cut(s) 1597
BcoDI GTCTC 4 cut(s) 292, 1213, 1510, 1530
BfaI CTAG 5 cut(s) 128, 333, 996, 1445, 1648
BfmI CTRYAG 1 cut(s) 1635
BfrI CTTAAG 1 cut(s) 737
BfuAI ACCTGC 2 cut(s) 394, 400
BfuI GTATCC 1 cut(s) 1597
BisI GCNGC 6 cut(s) 312, 665, 759, 864, 1142, 1466
BlpI GCTNAGC 1 cut(s) 1062
BlsI GCNGC 6 cut(s) 313, 666, 760, 865, 1143, 1467
Bme1390I CCNGG 4 cut(s) 15, 492, 1070, 1295
BmeT110I CYCGRG 1 cut(s) 1513
BmgT120I GGNCC 2 cut(s) 494, 645
BmiI GGNNCC 4 cut(s) 143, 266, 342, 559
BmrFI CCNGG 4 cut(s) 15, 492, 1070, 1295
BmsI GCATC 7 cut(s) 171, 323, 404, 1267, 1423, 1570, 1630
BpmI CTGGAG 6 cut(s) 36, 62, 197, 576, 1096, 1490
Bpu1102I GCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 2 cut(s) 1139, 1249
BsaHI GRCGYC 1 cut(s) 1539
BsaI GGTCTC 1 cut(s) 1213
BsaJI CCNNGG 3 cut(s) 491, 505, 641
Bsc4I CCNNNNNNNGG 6 cut(s) 261, 294, 492, 882, 1424, 1608
Bse1I ACTGG 9 cut(s) 45, 86, 180, 531, 691, 831, 876, 1079, 1570
Bse3DI GCAATG 1 cut(s) 250
BseBI CCWGG 4 cut(s) 15, 492, 1070, 1295
BseDI CCNNGG 3 cut(s) 491, 505, 641
BseGI GGATG 3 cut(s) 314, 1414, 1504
BseLI CCNNNNNNNGG 6 cut(s) 261, 294, 492, 882, 1424, 1608
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 5 cut(s) 153, 1053, 1179, 1224, 1544
BseNI ACTGG 9 cut(s) 45, 86, 180, 531, 691, 831, 876, 1079, 1570
BseRI GAGGAG 1 cut(s) 1475
BseXI GCAGC 4 cut(s) 323, 676, 875, 1477
BseYI CCCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 1144
BshFI GGCC 2 cut(s) 496, 647
BsiHKAI GWGCWC 1 cut(s) 1068
BsiHKCI CYCGRG 1 cut(s) 1513
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 6 cut(s) 261, 294, 492, 882, 1424, 1608
BsmAI GTCTC 4 cut(s) 292, 1213, 1510, 1530
BsmBI CGTCTC 1 cut(s) 1530
BsmFI GGGAC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 1086
BsnI GGCC 2 cut(s) 496, 647
Bso31I GGTCTC 1 cut(s) 1213
BsoBI CYCGRG 1 cut(s) 1513
Bsp1286I GDGCHC 1 cut(s) 1068
Bsp1407I TGTACA 2 cut(s) 813, 1308
Bsp143I GATC 7 cut(s) 21, 251, 340, 718, 743, 918, 1435
Bsp1720I GCTNAGC 1 cut(s) 1062
BspACI CCGC 6 cut(s) 356, 567, 660, 758, 1142, 1526
BspANI GGCC 2 cut(s) 496, 647
BspCNI CTCAG 5 cut(s) 154, 1054, 1180, 1223, 1545
BspFNI CGCG 1 cut(s) 1144
BspLI GGNNCC 4 cut(s) 143, 266, 342, 559
BspMAI CTGCAG 1 cut(s) 1639
BspMI ACCTGC 2 cut(s) 394, 400
BspPI GGATC 5 cut(s) 29, 246, 335, 348, 1430
BspQI GCTCTTC 1 cut(s) 978
BspTI CTTAAG 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 1213
BsrDI GCAATG 1 cut(s) 250
BsrGI TGTACA 2 cut(s) 813, 1308
BsrI ACTGG 9 cut(s) 45, 86, 180, 531, 691, 831, 876, 1079, 1570
BssECI CCNNGG 3 cut(s) 491, 505, 641
BssMI GATC 7 cut(s) 21, 251, 340, 718, 743, 918, 1435
BssNI GRCGYC 1 cut(s) 1539
BssT1I CCWWGG 2 cut(s) 505, 641
Bst2UI CCWGG 4 cut(s) 15, 492, 1070, 1295
Bst4CI ACNGT 4 cut(s) 101, 634, 811, 1313
Bst6I CTCTTC 1 cut(s) 978
BstACI GRCGYC 1 cut(s) 1539
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 872
BstAUI TGTACA 2 cut(s) 813, 1308
BstC8I GCNNGC 2 cut(s) 662, 1645
BstDEI CTNAG 6 cut(s) 146, 162, 1062, 1188, 1210, 1553
BstF5I GGATG 3 cut(s) 314, 1414, 1504
BstFNI CGCG 1 cut(s) 1144
BstKTI GATC 7 cut(s) 24, 254, 343, 721, 746, 921, 1438
BstMAI GTCTC 4 cut(s) 292, 1213, 1510, 1530
BstMBI GATC 7 cut(s) 21, 251, 340, 718, 743, 918, 1435
BstMWI GCNNNNNNNGC 5 cut(s) 551, 860, 872, 1141, 1471
BstNI CCWGG 4 cut(s) 15, 492, 1070, 1295
BstSCI CCNGG 4 cut(s) 13, 490, 1068, 1293
BstSFI CTRYAG 1 cut(s) 1635
BstUI CGCG 1 cut(s) 1144
BstV1I GCAGC 4 cut(s) 323, 676, 875, 1477
BstX2I RGATCY 2 cut(s) 251, 340
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 2 cut(s) 251, 340
BsuI GTATCC 1 cut(s) 1597
BsuRI GGCC 2 cut(s) 496, 647
BtsCI GGATG 3 cut(s) 314, 1414, 1504
BtsI GCAGTG 1 cut(s) 1542
BtsIMutI CAGTG 6 cut(s) 79, 173, 816, 838, 883, 1542
BveI ACCTGC 2 cut(s) 394, 400
Cac8I GCNNGC 2 cut(s) 662, 1645
Cfr13I GGNCC 2 cut(s) 494, 645
CseI GACGC 1 cut(s) 624
Csp6I GTAC 5 cut(s) 728, 789, 807, 814, 1309
CviAII CATG 1 cut(s) 293
CviQI GTAC 5 cut(s) 728, 789, 807, 814, 1309
DdeI CTNAG 6 cut(s) 146, 162, 1062, 1188, 1210, 1553
DpnI GATC 7 cut(s) 23, 253, 342, 720, 745, 920, 1437
DpnII GATC 7 cut(s) 21, 251, 340, 718, 743, 918, 1435
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
Eco130I CCWWGG 2 cut(s) 505, 641
Eco31I GGTCTC 1 cut(s) 1213
Eco57I CTGAAG 5 cut(s) 55, 462, 653, 1157, 1260
Eco88I CYCGRG 1 cut(s) 1513
EcoRII CCWGG 4 cut(s) 13, 490, 1068, 1293
EcoT14I CCWWGG 2 cut(s) 505, 641
ErhI CCWWGG 2 cut(s) 505, 641
Esp3I CGTCTC 1 cut(s) 1530
FaeI CATG 1 cut(s) 296
FaqI GGGAC 1 cut(s) 498
FatI CATG 1 cut(s) 292
FauI CCCGC 1 cut(s) 653
FauNDI CATATG 1 cut(s) 1125
FblI GTMKAC 4 cut(s) 90, 201, 1348, 1365
Fnu4HI GCNGC 6 cut(s) 312, 665, 759, 864, 1142, 1466
FokI GGATG 3 cut(s) 301, 1401, 1491
Fsp4HI GCNGC 6 cut(s) 312, 665, 759, 864, 1142, 1466
FspBI CTAG 5 cut(s) 128, 333, 996, 1445, 1648
GluI GCNGC 6 cut(s) 312, 665, 759, 864, 1142, 1466
GsaI CCCAGC 1 cut(s) 308
GsuI CTGGAG 6 cut(s) 36, 62, 197, 576, 1096, 1490
HaeIII GGCC 2 cut(s) 496, 647
HgaI GACGC 1 cut(s) 624
Hin1I GRCGYC 1 cut(s) 1539
Hin1II CATG 1 cut(s) 296
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 6 cut(s) 117, 233, 751, 1092, 1350, 1448
HphI GGTGA 7 cut(s) 393, 399, 405, 411, 417, 423, 789
Hpy166II GTNNAC 8 cut(s) 91, 202, 728, 814, 940, 1309, 1349, 1366
Hpy188I TCNGA 7 cut(s) 26, 672, 748, 1213, 1276, 1396, 1535
Hpy188III TCNNGA 6 cut(s) 161, 1225, 1266, 1339, 1445, 1508
Hpy8I GTNNAC 8 cut(s) 91, 202, 728, 814, 940, 1309, 1349, 1366
Hpy99I CGWCG 1 cut(s) 206
HpyCH4III ACNGT 4 cut(s) 101, 634, 811, 1313
HpyCH4IV ACGT 1 cut(s) 1539
HpyF10VI GCNNNNNNNGC 5 cut(s) 551, 860, 872, 1141, 1471
HpyF3I CTNAG 6 cut(s) 146, 162, 1062, 1188, 1210, 1553
HpySE526I ACGT 1 cut(s) 1539
Hsp92I GRCGYC 1 cut(s) 1539
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 7 cut(s) 21, 251, 340, 718, 743, 918, 1435
LguI GCTCTTC 1 cut(s) 978
LmnI GCTCC 8 cut(s) 147, 308, 382, 557, 1024, 1411, 1462, 1471
Lsp1109I GCAGC 4 cut(s) 323, 676, 875, 1477
LweI GCATC 7 cut(s) 171, 323, 404, 1267, 1423, 1570, 1630
MaeI CTAG 5 cut(s) 128, 333, 996, 1445, 1648
MaeII ACGT 1 cut(s) 1539
MaeIII GTNAC 4 cut(s) 682, 1216, 1339, 1540
MalI GATC 7 cut(s) 23, 253, 342, 720, 745, 920, 1437
MboI GATC 7 cut(s) 21, 251, 340, 718, 743, 918, 1435
MboII GAAGA 9 cut(s) 390, 779, 786, 925, 928, 992, 995, 1161, 1394
MflI RGATCY 2 cut(s) 251, 340
MhlI GDGCHC 1 cut(s) 1068
MlyI GAGTC 1 cut(s) 1344
MmeI TCCRAC 2 cut(s) 467, 1463
MnlI CCTC 9 cut(s) 11, 37, 330, 354, 496, 970, 1183, 1400, 1453
MseI TTAA 2 cut(s) 656, 738
MslI CAYNNNNRTG 1 cut(s) 998
MspA1I CMGCKG 3 cut(s) 304, 1135, 1468
MspCI CTTAAG 1 cut(s) 737
MspR9I CCNGG 4 cut(s) 15, 492, 1070, 1295
Mva1269I GAATGC 1 cut(s) 1086
MvaI CCWGG 4 cut(s) 15, 492, 1070, 1295
MvnI CGCG 1 cut(s) 1144
MwoI GCNNNNNNNGC 5 cut(s) 551, 860, 872, 1141, 1471
NdeI CATATG 1 cut(s) 1125
NdeII GATC 7 cut(s) 21, 251, 340, 718, 743, 918, 1435
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 4 cut(s) 143, 266, 342, 559
NmeAIII GCCGAG 1 cut(s) 1270
NmuCI GTSAC 3 cut(s) 1216, 1339, 1540
PaqCI CACCTGC 2 cut(s) 394, 400
PciSI GCTCTTC 1 cut(s) 978
PctI GAATGC 1 cut(s) 1086
PfeI GAWTC 5 cut(s) 117, 233, 751, 1092, 1448
PflMI CCANNNNNTGG 2 cut(s) 882, 1608
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 6 cut(s) 313, 666, 760, 865, 1143, 1467
PleI GAGTC 1 cut(s) 1344
PpsI GAGTC 1 cut(s) 1344
Psp6I CCWGG 4 cut(s) 13, 490, 1068, 1293
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 4 cut(s) 13, 490, 1068, 1293
PspN4I GGNNCC 4 cut(s) 143, 266, 342, 559
PspPI GGNCC 2 cut(s) 494, 645
PstI CTGCAG 1 cut(s) 1639
PsuI RGATCY 2 cut(s) 251, 340
PvuII CAGCTG 3 cut(s) 304, 1135, 1468
RsaI GTAC 5 cut(s) 729, 790, 808, 815, 1310
RsaNI GTAC 5 cut(s) 728, 789, 807, 814, 1309
RseI CAYNNNNRTG 1 cut(s) 998
SalI GTCGAC 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 978
SaqAI TTAA 2 cut(s) 656, 738
SatI GCNGC 6 cut(s) 312, 665, 759, 864, 1142, 1466
Sau3AI GATC 7 cut(s) 21, 251, 340, 718, 743, 918, 1435
Sau96I GGNCC 2 cut(s) 494, 645
SchI GAGTC 1 cut(s) 1344
ScrFI CCNGG 4 cut(s) 15, 492, 1070, 1295
SduI GDGCHC 1 cut(s) 1068
SfaNI GCATC 7 cut(s) 171, 323, 404, 1267, 1423, 1570, 1630
SfcI CTRYAG 1 cut(s) 1635
SmiMI CAYNNNNRTG 1 cut(s) 998
SmlI CTYRAG 3 cut(s) 737, 1118, 1264
SmoI CTYRAG 3 cut(s) 737, 1118, 1264
SsiI CCGC 6 cut(s) 356, 567, 660, 758, 1142, 1526
SspMI CTAG 5 cut(s) 128, 333, 996, 1445, 1648
StyD4I CCNGG 4 cut(s) 13, 490, 1068, 1293
StyI CCWWGG 2 cut(s) 505, 641
TaaI ACNGT 4 cut(s) 101, 634, 811, 1313
TaiI ACGT 1 cut(s) 1542
TaqI TCGA 5 cut(s) 201, 840, 921, 932, 1038
TatI WGTACW 2 cut(s) 813, 1308
TauI GCSGC 2 cut(s) 761, 1144
TfiI GAWTC 5 cut(s) 117, 233, 751, 1092, 1448
Tru1I TTAA 2 cut(s) 656, 738
Tru9I TTAA 2 cut(s) 656, 738
TscAI CASTG 6 cut(s) 79, 180, 816, 838, 883, 1549
TseFI GTSAC 3 cut(s) 1216, 1339, 1540
TseI GCWGC 4 cut(s) 311, 664, 863, 1465
Tsp45I GTSAC 3 cut(s) 1216, 1339, 1540
TspDTI ATGAA 2 cut(s) 99, 261
TspRI CASTG 6 cut(s) 79, 180, 816, 838, 883, 1549
Van91I CCANNNNNTGG 2 cut(s) 882, 1608
Vha464I CTTAAG 1 cut(s) 737
XapI RAATTY 2 cut(s) 949, 1494
XbaI TCTAGA 1 cut(s) 1444
XmiI GTMKAC 4 cut(s) 90, 201, 1348, 1365
XspI CTAG 5 cut(s) 128, 333, 996, 1445, 1648
ZraI GACGTC 1 cut(s) 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.