AT3G56050

kinase) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
20797871 .. 20801428
3558 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56050.2

Sequence Viewer

Length: 1500 bp
ATGAGTAACAACTGGAAATCCGTTCGATTAAGGCTTCAAAATCGTACTCTCGTGTTTCTTCTGGTGATTTTGAGCTTCGGTTCTTGCTATTCGTTGAAATCTCAAGGTGATGGTTTTCTGGAATCCGTGACGAAAGATCTATGGTCAGATATAGATGCTGAGGATTTGAGAGCAGTTGGTTTTCACAGGAAATTACTTGGCCGTTTTCGTAACCCGTACACCCATTTGAATGCGTTCAGGGACCGCCCTGTGGCAAGAGCTACACCTCCGTCATCTTCGGTTTCTACGAGACCTGATGCCAAAAGATCCTCTACATTGCCTCCGCCACAAAAAAGTCCTCCTGCGCAACATGTTTCTGCTCCACCTCCTTTTGTGCACCATGTGACTTTACCTAGTCTAACAAGCAGCTCCAAAACTTCTTCAAACAGCACAATTCCTATAGTGGCTGGCTGCATAGCGGGTGCTGTGTTTATCCTCCTTTTAGCTACTGGTGTTTTCTTTTTTAAAAGTAAGGCTGGGAAATCTGTGAATCCCTGGCGTACAGGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTGGTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGCCTGTGAAGATTTTAGTAATGTCATTGGGTCTTGCCCCATTGGTACATTGTTCAAAGGGACGCTATCAAGTGGGGTGGAGATAGCTGTGGCTTCTGTTGCTACTGCGTCTGCCAAAGAATGGACAAATAATATAGAAATGCAGTTCAGAAAGAAGATCGAAATGTTATCCAAGATAAACCACAAGAATTTTGTCAACCTTCTTGGTTACTGTGAAGAAGAAGAACCTTTCACTAGGATCTTGGTCTTTGAATATGCATCAAACGGAACAGTCTTTGAACATTTACACTATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGGGCATAGCTTATTGCCTTGACCATATGCACGGACTCAAGCCACCTATAGTCCACAGCAATCTTCTCTCATCATCAGTTCAACTCACAGAGGACTACGCAGTCAAAATTGCGGATTTCAATTTTGGATATTTAAAAGGCCCATCCGAGACAGAAAGCAGCACCAATGCACTCATAGATACAAACATCTCAGAAACAACACAAGAAGACAATGTTCACAGCTTCGGGTTGCTGTTGTTTGAACTGATGACAGGAAAACTCCCAGAGTCAGTTCAAAAAGGTGACTCGATAGATACCGGATTGGCTGTCTTCTTGAGAGGAAAGACATTAAGGGAGATGGTGGATCCGACAATTGAAAGCTTTGACGAGAAGATTGAGAATATAGGTGAAGTGATCAAAAGCTGCATAAGAGCAGACGCGAAACAGAGACCGATAATGAAGGAAGTCACAGGGAGATTACGAGAGATCACTGGATTATCACCAGACGACACTATCCCAAAACTTTCACCACTCTGGTGGGCAGAGCTGGAAGTTCTGTCCACTGCGTGA

Protein Analysis

499

Amino Acids

55.23

Weight (kDa)

7.65

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 210 - 469 7.9e-23 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 212 - 466 2e-18 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1052
Acc16I TGCGCA 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 735
AccII CGCG 1 cut(s) 1370
AciI CCGC 5 cut(s) 244, 323, 458, 937, 1064
AclWI GGATC 4 cut(s) 300, 860, 1289, 1302
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 1 cut(s) 545
AdeI CACNNNGTG 2 cut(s) 382, 1497
AfaI GTAC 4 cut(s) 46, 218, 541, 661
AfiI CCNNNNNNNGG 2 cut(s) 250, 735
AflIII ACRYGT 1 cut(s) 349
AjnI CCWGG 1 cut(s) 533
AleI CACNNNNGTG 1 cut(s) 1465
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 3 cut(s) 283, 1094, 1372
Alw44I GTGCAC 1 cut(s) 374
AlwI GGATC 4 cut(s) 300, 860, 1289, 1302
AoxI GGCC 2 cut(s) 199, 1090
ApaLI GTGCAC 1 cut(s) 374
ApeKI GCWGC 5 cut(s) 405, 450, 614, 1110, 1353
ApoI RAATTY 1 cut(s) 802
Asp700I GAANNNNTTC 2 cut(s) 233, 569
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 2 cut(s) 241, 1091
AsuHPI GGTGA 6 cut(s) 76, 119, 1244, 1349, 1422, 1449
AvaII GGWCC 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 378
BamHI GGATCC 1 cut(s) 1294
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 2 cut(s) 1164, 1252
Bbv12I GWGCWC 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 5 cut(s) 417, 437, 601, 1122, 1340
BccI CCATC 3 cut(s) 104, 1102, 1282
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 535
BclI TGATCA 1 cut(s) 1344
BcoDI GTCTC 3 cut(s) 283, 1094, 1372
BfaI CTAG 2 cut(s) 393, 849
BfmI CTRYAG 2 cut(s) 438, 999
BglII AGATCT 2 cut(s) 136, 599
BisI GCNGC 6 cut(s) 406, 451, 615, 938, 1111, 1354
BlsI GCNGC 6 cut(s) 407, 452, 616, 939, 1112, 1355
Bme1390I CCNGG 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 241, 1091
BmiI GGNNCC 2 cut(s) 242, 1296
BmrFI CCNGG 1 cut(s) 535
BmrI ACTGGG 1 cut(s) 937
BmsI GCATC 3 cut(s) 145, 286, 881
BmuI ACTGGG 1 cut(s) 937
BpiI GAAGAC 2 cut(s) 1164, 1252
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 3 cut(s) 87, 974, 1285
BsaI GGTCTC 2 cut(s) 283, 1372
BsaJI CCNNGG 1 cut(s) 533
BsaWI WCCGGW 1 cut(s) 1247
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 735
Bse1I ACTGG 5 cut(s) 17, 493, 583, 932, 1426
Bse3DI GCAATG 2 cut(s) 314, 957
BseBI CCWGG 1 cut(s) 535
BseDI CCNNGG 1 cut(s) 533
BseGI GGATG 1 cut(s) 1094
BseLI CCNNNNNNNGG 2 cut(s) 250, 735
BseMI GCAATG 2 cut(s) 314, 957
BseMII CTCAG 3 cut(s) 150, 594, 1155
BseNI ACTGG 5 cut(s) 17, 493, 583, 932, 1426
BseSI GKGCMC 1 cut(s) 378
BseXI GCAGC 5 cut(s) 417, 437, 601, 1122, 1340
BseYI CCCAGC 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 1370
BshFI GGCC 2 cut(s) 201, 1092
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 1 cut(s) 1248
BslFI GGGAC 3 cut(s) 254, 569, 688
BslI CCNNNNNNNGG 2 cut(s) 250, 735
BsmAI GTCTC 3 cut(s) 283, 1094, 1372
BsmFI GGGAC 3 cut(s) 254, 569, 688
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 2 cut(s) 201, 1092
Bso31I GGTCTC 2 cut(s) 283, 1372
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 8 cut(s) 136, 305, 599, 771, 852, 1294, 1344, 1416
BspACI CCGC 5 cut(s) 244, 323, 458, 937, 1064
BspANI GGCC 2 cut(s) 201, 1092
BspCNI CTCAG 3 cut(s) 151, 595, 1154
BspFNI CGCG 1 cut(s) 1370
BspLI GGNNCC 2 cut(s) 242, 1296
BspPI GGATC 4 cut(s) 300, 860, 1289, 1302
BspTNI GGTCTC 2 cut(s) 283, 1372
BsrDI GCAATG 2 cut(s) 314, 957
BsrI ACTGG 5 cut(s) 17, 493, 583, 932, 1426
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 8 cut(s) 136, 305, 599, 771, 852, 1294, 1344, 1416
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 2 cut(s) 827, 886
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 5 cut(s) 159, 548, 603, 941, 1141
BstF5I GGATG 1 cut(s) 1094
BstFNI CGCG 1 cut(s) 1370
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 8 cut(s) 139, 308, 602, 774, 855, 1297, 1347, 1419
BstMAI GTCTC 3 cut(s) 283, 1094, 1372
BstMBI GATC 8 cut(s) 136, 305, 599, 771, 852, 1294, 1344, 1416
BstMWI GCNNNNNNNGC 1 cut(s) 713
BstNI CCWGG 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 533
BstSFI CTRYAG 2 cut(s) 438, 999
BstSLI GKGCMC 1 cut(s) 378
BstUI CGCG 1 cut(s) 1370
BstV1I GCAGC 5 cut(s) 417, 437, 601, 1122, 1340
BstV2I GAAGAC 2 cut(s) 1164, 1252
BstX2I RGATCY 5 cut(s) 136, 305, 599, 852, 1294
BstXI CCANNNNNNTGG 1 cut(s) 1467
BstYI RGATCY 5 cut(s) 136, 305, 599, 852, 1294
BsuRI GGCC 2 cut(s) 201, 1092
BtsCI GGATG 1 cut(s) 1094
BtsI GCAGTG 1 cut(s) 1491
BtsIMutI CAGTG 2 cut(s) 1419, 1491
Cac8I GCNNGC 1 cut(s) 448
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 241, 1091
CseI GACGC 3 cut(s) 685, 711, 1376
Csp6I GTAC 4 cut(s) 45, 217, 540, 660
CspCI CAANNNNNGTGG 2 cut(s) 672, 707
CviAII CATG 2 cut(s) 350, 380
CviQI GTAC 4 cut(s) 45, 217, 540, 660
DdeI CTNAG 5 cut(s) 159, 548, 603, 941, 1141
DpnI GATC 8 cut(s) 138, 307, 601, 773, 854, 1296, 1346, 1418
DpnII GATC 8 cut(s) 136, 305, 599, 771, 852, 1294, 1344, 1416
DraI TTTAAA 2 cut(s) 505, 1086
DraIII CACNNNGTG 2 cut(s) 382, 1497
DrdI GACNNNNNNGTC 1 cut(s) 1052
DseDI GACNNNNNNGTC 1 cut(s) 1052
EaeI YGGCCR 1 cut(s) 199
EciI GGCGGA 1 cut(s) 312
Eco31I GGTCTC 2 cut(s) 283, 1372
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 533
EcoT22I ATGCAT 1 cut(s) 874
FaeI CATG 2 cut(s) 353, 383
FaqI GGGAC 3 cut(s) 254, 569, 688
FatI CATG 2 cut(s) 349, 379
FauI CCCGC 1 cut(s) 451
FauNDI CATATG 1 cut(s) 978
FbaI TGATCA 1 cut(s) 1344
Fnu4HI GCNGC 6 cut(s) 406, 451, 615, 938, 1111, 1354
FokI GGATG 1 cut(s) 1081
Fsp4HI GCNGC 6 cut(s) 406, 451, 615, 938, 1111, 1354
FspBI CTAG 2 cut(s) 393, 849
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 1 cut(s) 345
GluI GCNGC 6 cut(s) 406, 451, 615, 938, 1111, 1354
GsaI CCCAGC 1 cut(s) 519
HaeIII GGCC 2 cut(s) 201, 1092
HapII CCGG 1 cut(s) 1248
HgaI GACGC 3 cut(s) 685, 711, 1376
HhaI GCGC 1 cut(s) 346
Hin1II CATG 2 cut(s) 353, 383
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 1309
HinfI GANTC 6 cut(s) 122, 529, 911, 987, 1217, 1235
HpaII CCGG 1 cut(s) 1248
HphI GGTGA 6 cut(s) 76, 119, 1244, 1349, 1422, 1449
Hpy166II GTNNAC 7 cut(s) 219, 376, 554, 811, 1006, 1168, 1491
Hpy188I TCNGA 8 cut(s) 148, 564, 604, 764, 916, 1099, 1144, 1299
Hpy188III TCNNGA 2 cut(s) 119, 1264
Hpy8I GTNNAC 7 cut(s) 219, 376, 554, 811, 1006, 1168, 1491
HpyAV CCTTC 2 cut(s) 824, 1384
HpyCH4III ACNGT 2 cut(s) 827, 886
HpyCH4V TGCA 7 cut(s) 376, 453, 757, 872, 982, 1121, 1356
HpyF10VI GCNNNNNNNGC 1 cut(s) 713
HpyF3I CTNAG 5 cut(s) 159, 548, 603, 941, 1141
Hsp92II CATG 2 cut(s) 353, 383
HspAI GCGC 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 1344
Kzo9I GATC 8 cut(s) 136, 305, 599, 771, 852, 1294, 1344, 1416
LmnI GCTCC 2 cut(s) 364, 413
Lsp1109I GCAGC 5 cut(s) 417, 437, 601, 1122, 1340
LweI GCATC 3 cut(s) 145, 286, 881
MaeI CTAG 2 cut(s) 393, 849
MaeIII GTNAC 7 cut(s) 5, 127, 209, 382, 821, 1232, 1396
MalI GATC 8 cut(s) 138, 307, 601, 773, 854, 1296, 1346, 1418
MboI GATC 8 cut(s) 136, 305, 599, 771, 852, 1294, 1344, 1416
MfeI CAATTG 1 cut(s) 1302
MflI RGATCY 5 cut(s) 136, 305, 599, 852, 1294
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 6 cut(s) 191, 432, 802, 1059, 1072, 1302
MlyI GAGTC 3 cut(s) 981, 1226, 1229
MmeI TCCRAC 1 cut(s) 1322
MnlI CCTC 9 cut(s) 154, 276, 319, 330, 348, 375, 485, 1036, 1262
Mph1103I ATGCAT 1 cut(s) 874
MroXI GAANNNNTTC 2 cut(s) 233, 569
MseI TTAA 4 cut(s) 29, 504, 1085, 1280
MslI CAYNNNNRTG 2 cut(s) 228, 1465
MspI CCGG 1 cut(s) 1248
MspR9I CCNGG 1 cut(s) 535
MunI CAATTG 1 cut(s) 1302
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 1 cut(s) 535
MvnI CGCG 1 cut(s) 1370
MwoI GCNNNNNNNGC 1 cut(s) 713
NdeI CATATG 1 cut(s) 978
NdeII GATC 8 cut(s) 136, 305, 599, 771, 852, 1294, 1344, 1416
NlaIII CATG 2 cut(s) 353, 383
NlaIV GGNNCC 2 cut(s) 242, 1296
NmuCI GTSAC 4 cut(s) 127, 382, 1232, 1396
NsbI TGCGCA 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 874
NspI RCATGY 1 cut(s) 353
OliI CACNNNNGTG 1 cut(s) 1465
PciI ACATGT 1 cut(s) 349
PcsI WCGNNNNNNNCGW 1 cut(s) 284
PctI GAATGC 1 cut(s) 235
PdmI GAANNNNTTC 2 cut(s) 233, 569
PfeI GAWTC 3 cut(s) 122, 529, 911
PflMI CCANNNNNTGG 1 cut(s) 735
PkrI GCNGC 6 cut(s) 407, 452, 616, 939, 1112, 1355
PleI GAGTC 3 cut(s) 981, 1225, 1229
PpsI GAGTC 3 cut(s) 981, 1225, 1229
PscI ACATGT 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 533
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 1 cut(s) 533
PspN4I GGNNCC 2 cut(s) 242, 1296
PspPI GGNCC 2 cut(s) 241, 1091
PsuI RGATCY 5 cut(s) 136, 305, 599, 852, 1294
RsaI GTAC 4 cut(s) 46, 218, 541, 661
RsaNI GTAC 4 cut(s) 45, 217, 540, 660
RseI CAYNNNNRTG 2 cut(s) 228, 1465
SaqAI TTAA 4 cut(s) 29, 504, 1085, 1280
SatI GCNGC 6 cut(s) 406, 451, 615, 938, 1111, 1354
Sau3AI GATC 8 cut(s) 136, 305, 599, 771, 852, 1294, 1344, 1416
Sau96I GGNCC 2 cut(s) 241, 1091
SchI GAGTC 3 cut(s) 981, 1226, 1229
ScrFI CCNGG 1 cut(s) 535
SduI GDGCHC 1 cut(s) 378
SfaNI GCATC 3 cut(s) 145, 286, 881
SfcI CTRYAG 2 cut(s) 438, 999
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 2 cut(s) 228, 1465
SmlI CTYRAG 3 cut(s) 102, 989, 1264
SmoI CTYRAG 3 cut(s) 102, 989, 1264
Sse9I AATT 6 cut(s) 191, 432, 802, 1059, 1072, 1302
SsiI CCGC 5 cut(s) 244, 323, 458, 937, 1064
SspMI CTAG 2 cut(s) 393, 849
StyD4I CCNGG 1 cut(s) 533
TaaI ACNGT 2 cut(s) 827, 886
TaqI TCGA 3 cut(s) 25, 774, 1238
TaqII GACCGA 1 cut(s) 1396
TasI AATT 6 cut(s) 191, 432, 802, 1059, 1072, 1302
TauI GCSGC 1 cut(s) 940
TfiI GAWTC 3 cut(s) 122, 529, 911
Tru1I TTAA 4 cut(s) 29, 504, 1085, 1280
Tru9I TTAA 4 cut(s) 29, 504, 1085, 1280
TscAI CASTG 2 cut(s) 1426, 1498
TseFI GTSAC 4 cut(s) 127, 382, 1232, 1396
TseI GCWGC 5 cut(s) 405, 450, 614, 1110, 1353
Tsp45I GTSAC 4 cut(s) 127, 382, 1232, 1396
TspDTI ATGAA 2 cut(s) 562, 1403
TspGWI ACGGA 5 cut(s) 10, 115, 258, 894, 999
TspRI CASTG 2 cut(s) 1426, 1498
Van91I CCANNNNNTGG 1 cut(s) 735
VneI GTGCAC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 802
XceI RCATGY 1 cut(s) 353
XmnI GAANNNNTTC 2 cut(s) 233, 569
XspI CTAG 2 cut(s) 393, 849
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.