Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009831

Physical Location & Seq

Genomic Coordinates Reverse (-)

46865038 .. 46866474

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG332900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGATAATTCCTGGAGGGATCGGAGAGTTGAAGGAACTGGAGGTGTTAGACTTGGGATATAATAACTTCAGTGGAACACTTCCAGTAGACCTTCACAGTAATTTTTCATTGAGAATCCTGCTACTAGATAACAACAGGCTCCTTAGTATCTTATCTCCTGAGATTTATGCACTGGAGATGCTTTCCCAATATCAAGTCGACGAAAACCAACTTTCTGGTGCAACCAGAGAATCATCGTGCAATGAAAGATCCATTTCAAGGAACCTTGCTAATACTGAACACTCCTATCATGGGAGACAGCTGGGAGCAGCATCCCCTCCAAATCGTCCTAGCTTGGATCCTCCCAACGAACCGCCAAAGACAGAACCATCTGCTCCTACACCTGCACCTGCATCTTCACCTTCACCTTCACCTTCACCTTCACCTTCACCTTCTGTTCCAACTTCCCCACCAACCACATCTGCTTCTCCACCTTCAGTTTCCTCTCCTGGGCCTTCCCCCCAAGGAAGTCCCCCAAAGGAAAGTTCCAGTCATCGTGTTGCAATAATGGCTGGAGCCATAGGCGGTGGTGGTTTTCTTGTAATTTTAGTTATTGGGTTGTATTTCTATGGACGCAACAAGGTAGCTACTGTCAAACCTTGGGCCACAGGGTTAAGCGGGCAGCTTCAGAAAGCCTTTGTAACTGGTATTGCTTCTTTCGTAATGGAGAAAATTGATCTCTGTGTACCAAATCTTAAGAGATCGGAGATTCAAGCGGCTTGTGAAGATTTCAGTAATGTTATAGGTACTTCTTCACCGATGGGTACAGTGTACAAAGGAACATTATCCAGTGGTGTCGAAATTGCTGTGGCTTCTCTCGCAGCAACATCTGCCAGTGGTTGGGGCAACAATTTAGAGTTGCAGTTTAGGAAGAAGGTACTAAACAATTTAAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

313

Amino Acids

32.83

Weight (kDa)

6.44

Isoelectric Point (pI)

63.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40270 AT2G40270 AT3G56050 AT3G56050
fragaria_vesca	FvH4_7g24950 FvH4_7g24950 FvH4_7g24950
malus_domestica	MD01G1156900.v1.1
prunus_persica	Prupe.2G254500_v2.0.a1
pyrus_communis	pycom01g17370
rosa_chinensis	RchiOBHm_Chr1g0370831
rosa_laevigata	RLG00000027005
rosa_multiflora	Rmu_sc0009474.1_g000013
rosa_roxburghii	Rroxscaffold_4G00286200
rosa_rugosa	Rorug01G0359900
rosa_samantha	Rh1AG369400 Rh1BG332800 Rh1BG332900 Rh1CG346500 Rh1DG364100
rosa_wichuraiana	Rw1G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	394, 400
Acc36I	ACCTGC	2 cut(s)	394, 400
AccB7I	CCANNNNNTGG	1 cut(s)	882
AccI	GTMKAC	2 cut(s)	90, 201
AciI	CCGC	4 cut(s)	356, 567, 660, 758
AclWI	GGATC	4 cut(s)	29, 246, 335, 348
AcuI	CTGAAG	3 cut(s)	55, 462, 653
AfaI	GTAC	5 cut(s)	729, 790, 808, 815, 921
AfiI	CCNNNNNNNGG	4 cut(s)	261, 294, 492, 882
AflII	CTTAAG	1 cut(s)	737
AgsI	TTSAA	3 cut(s)	34, 261, 755
AjnI	CCWGG	2 cut(s)	13, 490
AjuI	GAANNNNNNNTTGG	2 cut(s)	511, 543
AluBI	AGCT	5 cut(s)	304, 336, 629, 667, 937
AluI	AGCT	5 cut(s)	304, 336, 629, 667, 937
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	4 cut(s)	29, 246, 335, 348
AoxI	GGCC	2 cut(s)	494, 645
ApeKI	GCWGC	3 cut(s)	311, 664, 863
AspS9I	GGNCC	2 cut(s)	494, 645
AsuHPI	GGTGA	7 cut(s)	393, 399, 405, 411, 417, 423, 789
BamHI	GGATCC	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	323, 676, 875
BccI	CCATC	2 cut(s)	379, 796
BciT130I	CCWGG	2 cut(s)	15, 492
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	128, 333
BfrI	CTTAAG	1 cut(s)	737
BfuAI	ACCTGC	2 cut(s)	394, 400
BisI	GCNGC	4 cut(s)	312, 665, 759, 864
BlsI	GCNGC	4 cut(s)	313, 666, 760, 865
Bme1390I	CCNGG	2 cut(s)	15, 492
BmgT120I	GGNCC	2 cut(s)	494, 645
BmiI	GGNNCC	4 cut(s)	143, 266, 342, 559
BmrFI	CCNGG	2 cut(s)	15, 492
BmsI	GCATC	3 cut(s)	171, 323, 404
BpmI	CTGGAG	4 cut(s)	36, 62, 197, 576
BsaJI	CCNNGG	3 cut(s)	491, 505, 641
Bsc4I	CCNNNNNNNGG	4 cut(s)	261, 294, 492, 882
Bse1I	ACTGG	7 cut(s)	45, 86, 180, 531, 691, 831, 876
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	2 cut(s)	15, 492
BseDI	CCNNGG	3 cut(s)	491, 505, 641
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	4 cut(s)	261, 294, 492, 882
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	7 cut(s)	45, 86, 180, 531, 691, 831, 876
BseXI	GCAGC	3 cut(s)	323, 676, 875
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	496, 647
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	4 cut(s)	261, 294, 492, 882
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	496, 647
Bsp1407I	TGTACA	1 cut(s)	813
Bsp143I	GATC	5 cut(s)	21, 251, 340, 718, 743
BspACI	CCGC	4 cut(s)	356, 567, 660, 758
BspANI	GGCC	2 cut(s)	496, 647
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	4 cut(s)	143, 266, 342, 559
BspMI	ACCTGC	2 cut(s)	394, 400
BspPI	GGATC	4 cut(s)	29, 246, 335, 348
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	813
BsrI	ACTGG	7 cut(s)	45, 86, 180, 531, 691, 831, 876
BssECI	CCNNGG	3 cut(s)	491, 505, 641
BssMI	GATC	5 cut(s)	21, 251, 340, 718, 743
BssT1I	CCWWGG	2 cut(s)	505, 641
Bst2UI	CCWGG	2 cut(s)	15, 492
Bst4CI	ACNGT	3 cut(s)	101, 634, 811
BstAFI	CTTAAG	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstAUI	TGTACA	1 cut(s)	813
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	2 cut(s)	146, 162
BstF5I	GGATG	1 cut(s)	314
BstKTI	GATC	5 cut(s)	24, 254, 343, 721, 746
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	5 cut(s)	21, 251, 340, 718, 743
BstMWI	GCNNNNNNNGC	3 cut(s)	551, 860, 872
BstNI	CCWGG	2 cut(s)	15, 492
BstSCI	CCNGG	2 cut(s)	13, 490
BstV1I	GCAGC	3 cut(s)	323, 676, 875
BstX2I	RGATCY	2 cut(s)	251, 340
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	2 cut(s)	251, 340
BsuRI	GGCC	2 cut(s)	496, 647
BtsCI	GGATG	1 cut(s)	314
BtsIMutI	CAGTG	5 cut(s)	79, 173, 816, 838, 883
BveI	ACCTGC	2 cut(s)	394, 400
Cac8I	GCNNGC	1 cut(s)	662
Cfr13I	GGNCC	2 cut(s)	494, 645
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	5 cut(s)	728, 789, 807, 814, 920
CviAII	CATG	1 cut(s)	293
CviQI	GTAC	5 cut(s)	728, 789, 807, 814, 920
DdeI	CTNAG	2 cut(s)	146, 162
DpnI	GATC	5 cut(s)	23, 253, 342, 720, 745
DpnII	GATC	5 cut(s)	21, 251, 340, 718, 743
DraI	TTTAAA	1 cut(s)	933
Eco130I	CCWWGG	2 cut(s)	505, 641
Eco57I	CTGAAG	3 cut(s)	55, 462, 653
EcoRII	CCWGG	2 cut(s)	13, 490
EcoT14I	CCWWGG	2 cut(s)	505, 641
ErhI	CCWWGG	2 cut(s)	505, 641
FaeI	CATG	1 cut(s)	296
FaiI	YATR	7 cut(s)	63, 171, 294, 563, 612, 785, 940
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	1 cut(s)	292
FauI	CCCGC	1 cut(s)	653
FblI	GTMKAC	2 cut(s)	90, 201
Fnu4HI	GCNGC	4 cut(s)	312, 665, 759, 864
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	4 cut(s)	312, 665, 759, 864
FspBI	CTAG	2 cut(s)	128, 333
GluI	GCNGC	4 cut(s)	312, 665, 759, 864
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	4 cut(s)	36, 62, 197, 576
HaeIII	GGCC	2 cut(s)	496, 647
HgaI	GACGC	1 cut(s)	624
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	117, 233, 751
HphI	GGTGA	7 cut(s)	393, 399, 405, 411, 417, 423, 789
Hpy166II	GTNNAC	4 cut(s)	91, 202, 728, 814
Hpy188I	TCNGA	3 cut(s)	26, 672, 748
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	4 cut(s)	91, 202, 728, 814
Hpy99I	CGWCG	1 cut(s)	206
HpyCH4III	ACNGT	3 cut(s)	101, 634, 811
HpyCH4V	TGCA	7 cut(s)	173, 224, 243, 389, 395, 545, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	551, 860, 872
HpyF3I	CTNAG	2 cut(s)	146, 162
Hsp92II	CATG	1 cut(s)	296
Kzo9I	GATC	5 cut(s)	21, 251, 340, 718, 743
LmnI	GCTCC	4 cut(s)	147, 308, 382, 557
Lsp1109I	GCAGC	3 cut(s)	323, 676, 875
LweI	GCATC	3 cut(s)	171, 323, 404
MaeI	CTAG	2 cut(s)	128, 333
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	5 cut(s)	23, 253, 342, 720, 745
MboI	GATC	5 cut(s)	21, 251, 340, 718, 743
MboII	GAAGA	4 cut(s)	390, 779, 786, 925
MflI	RGATCY	2 cut(s)	251, 340
MluCI	AATT	7 cut(s)	9, 103, 585, 714, 843, 892, 928
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	5 cut(s)	11, 37, 330, 354, 496
MseI	TTAA	3 cut(s)	656, 738, 932
MspA1I	CMGCKG	1 cut(s)	304
MspCI	CTTAAG	1 cut(s)	737
MspR9I	CCNGG	2 cut(s)	15, 492
MvaI	CCWGG	2 cut(s)	15, 492
MwoI	GCNNNNNNNGC	3 cut(s)	551, 860, 872
NdeII	GATC	5 cut(s)	21, 251, 340, 718, 743
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	4 cut(s)	143, 266, 342, 559
PaqCI	CACCTGC	2 cut(s)	394, 400
PfeI	GAWTC	3 cut(s)	117, 233, 751
PflMI	CCANNNNNTGG	1 cut(s)	882
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	4 cut(s)	313, 666, 760, 865
Psp6I	CCWGG	2 cut(s)	13, 490
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	2 cut(s)	13, 490
PspN4I	GGNNCC	4 cut(s)	143, 266, 342, 559
PspPI	GGNCC	2 cut(s)	494, 645
PsuI	RGATCY	2 cut(s)	251, 340
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	5 cut(s)	729, 790, 808, 815, 921
RsaNI	GTAC	5 cut(s)	728, 789, 807, 814, 920
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	656, 738, 932
SatI	GCNGC	4 cut(s)	312, 665, 759, 864
Sau3AI	GATC	5 cut(s)	21, 251, 340, 718, 743
Sau96I	GGNCC	2 cut(s)	494, 645
ScrFI	CCNGG	2 cut(s)	15, 492
SfaNI	GCATC	3 cut(s)	171, 323, 404
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	7 cut(s)	9, 103, 585, 714, 843, 892, 928
SsiI	CCGC	4 cut(s)	356, 567, 660, 758
SspMI	CTAG	2 cut(s)	128, 333
StyD4I	CCNGG	2 cut(s)	13, 490
StyI	CCWWGG	2 cut(s)	505, 641
TaaI	ACNGT	3 cut(s)	101, 634, 811
TaqI	TCGA	2 cut(s)	201, 840
TasI	AATT	7 cut(s)	9, 103, 585, 714, 843, 892, 928
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	1 cut(s)	761
TfiI	GAWTC	3 cut(s)	117, 233, 751
Tru1I	TTAA	3 cut(s)	656, 738, 932
Tru9I	TTAA	3 cut(s)	656, 738, 932
TscAI	CASTG	5 cut(s)	79, 180, 816, 838, 883
TseI	GCWGC	3 cut(s)	311, 664, 863
TspDTI	ATGAA	2 cut(s)	99, 261
TspRI	CASTG	5 cut(s)	79, 180, 816, 838, 883
Van91I	CCANNNNNTGG	1 cut(s)	882
Vha464I	CTTAAG	1 cut(s)	737
XmiI	GTMKAC	2 cut(s)	90, 201
XspI	CTAG	2 cut(s)	128, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.