Rh1DG364100

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
59028274 .. 59030585
2312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG364100.1

Sequence Viewer

Length: 1614 bp
ATGGGGATAATTCCTGGAGGGATCGGAGAGTTGAAGGAACTGGAGGTGTTAGACTTGGGATATAATAACTTCAGTGGAACACTTCCAGTAGACCTTCACAGTAATTTTTCATTGAGAATCCTGCTACTAGATAACAACAGGCTCCTTAGTATCTTATCTCCTGAGATTTATGCACTGGAGATGCTTTCCCAATATCAAGTCGACGAAAACCAACTTTCTGGTGCAACCAGAGAATCATCGTGCAATGAAAGATCCATTTCAAGGAACCTTGCTAATACTGAACACTCCTATCATGGGAGACAGCTGGGAGCAGCATCCCCTCCAAATCGTCCTAGCTTGGATCCTCCCAACGAACCGCCAAAGACAGAACCATCTGCTCCTACACCTGCACCTGCATCTTCACCTTCACCTTCACCTTCACCTTCACCTTCACCTTCTGTTCCAACTTCCCCACCAACCACATCTGCTTCTCCACCTTCAGTTTCCTCTCCTGGGCCTTCCCCCCAAGGAAGTCCCCCAAAGGAAAGTTCCAGTCATCGTGTTGCAATAATGGCTGGAGCCATAGGCGGTGGTGGTTTTCTTGTAATTTTAGTTATTGGGTTGTATTTCTATGGACGCAACAAGGTAGCTACTGTCAAACCTTGGGCCACAGGGTTAAGCGGGCAGCTTCAGAAAGCCTTTGTAACTGGTGTACCAAATCTTAAGAGATCGGAGATTCAAGCGGCTTGTGAAGATTTCAGTAATGTTATAGGTACTTCTTCACCGATGGGTACAGTGTACAAAGGAACATTATCCAGTGGTGTCGAAATTGCTGTGGCTTCTCTCGCAGCAACATCTGCCAGTGGTTGGGGCAACAATTTAGAGTTGCAGTTTAGGAAGAAGATCGACACATTATCGAAAGTGAACCACAAGAATTTTGTCAGCCTTATTGGATATTGCGAGGAAGAAGAGCCTTTCACTAGAATGATGGTTTTTGAATATGCTCCCAATGGCACACTTTTCGAGCATTTACACATAAAAGAAGCTGAGCACCTGGACTGGAGAATGCGAATGAGAATCTCAATGGGAATGACCTACTGCCTTGAGCATATGCACCAGCTGAAGCCGCGTATAGCTCACAACAACTTGACTTCTTCTGCCGTCCAGCTAACTGAGGATTATGCACCGAAGGTCTCAGAAGTCACTTTCTGGAATGAGATAGCTGAAGCCGAGAAACAATCATCTGGCTCAAGACTTTCTGATGCACAATCAACAAGCCTGGAAAGTAATGTGTACAGTTTTGGTGTAATTTTGTTTGAAATCGTGACAGGTAGACTCCCTTATTCAGTAGACAATGGCTCACTTGAAGATTGGGCTTCTGACTATGTGAGAGGGGAGCATCCCTTCAAGGGAATGGTTGATCCAACTCTAGAATCTTTCCAAGAGGAGCAGCTGGAGCGAATTGGAGAAGTAATAAGAATTTGTGTCCATCCTGACCCGAGACAAAGACCGCCAATCAGAGACGTCACTGCAAGGCTGAGAGAGATAACTGGACTTACACCTGATGCAGTATCCCCGAAACTCTCCACTCTTTGGTGGGCAGAACTTGAACTTATGTCTGCAGATGCAAGCTAG

Protein Analysis

537

Amino Acids

58.49

Weight (kDa)

5.35

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 255 - 506 4.4e-20 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 256 - 502 5.1e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 394, 400
AatII GACGTC 1 cut(s) 1506
Acc36I ACCTGC 2 cut(s) 394, 400
AccB7I CCANNNNNTGG 2 cut(s) 846, 1572
AccI GTMKAC 4 cut(s) 90, 201, 1312, 1329
AccII CGCG 1 cut(s) 1108
AciI CCGC 6 cut(s) 356, 567, 660, 722, 1106, 1490
AclWI GGATC 5 cut(s) 29, 246, 335, 348, 1394
AcsI RAATTY 2 cut(s) 913, 1458
AcuI CTGAAG 5 cut(s) 55, 462, 653, 1121, 1224
AcyI GRCGYC 1 cut(s) 1503
AfaI GTAC 5 cut(s) 693, 754, 772, 779, 1274
AfiI CCNNNNNNNGG 6 cut(s) 261, 294, 492, 846, 1388, 1572
AflII CTTAAG 1 cut(s) 701
AgsI TTSAA 8 cut(s) 34, 261, 719, 977, 1298, 1346, 1387, 1589
AjnI CCWGG 4 cut(s) 13, 490, 1032, 1257
AjuI GAANNNNNNNTTGG 2 cut(s) 511, 543
Alw21I GWGCWC 1 cut(s) 1032
Alw26I GTCTC 4 cut(s) 292, 1177, 1474, 1494
AlwI GGATC 5 cut(s) 29, 246, 335, 348, 1394
Ama87I CYCGRG 1 cut(s) 1477
AoxI GGCC 2 cut(s) 494, 645
ApeKI GCWGC 4 cut(s) 311, 664, 827, 1429
ApoI RAATTY 2 cut(s) 913, 1458
AspS9I GGNCC 2 cut(s) 494, 645
AsuHPI GGTGA 7 cut(s) 393, 399, 405, 411, 417, 423, 753
AvaI CYCGRG 1 cut(s) 1477
BaeI ACNNNNGTAYC 2 cut(s) 675, 708
BamHI GGATCC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 1032
BbvI GCAGC 4 cut(s) 323, 676, 839, 1441
BccI CCATC 4 cut(s) 379, 760, 961, 1476
BceAI ACGGC 1 cut(s) 1124
BcgI CGANNNNNNTGC 2 cut(s) 982, 1016
BciT130I CCWGG 4 cut(s) 15, 492, 1034, 1259
BciVI GTATCC 1 cut(s) 1561
BcoDI GTCTC 4 cut(s) 292, 1177, 1474, 1494
BfaI CTAG 5 cut(s) 128, 333, 960, 1409, 1612
BfmI CTRYAG 1 cut(s) 1599
BfrI CTTAAG 1 cut(s) 701
BfuAI ACCTGC 2 cut(s) 394, 400
BfuI GTATCC 1 cut(s) 1561
BisI GCNGC 6 cut(s) 312, 665, 723, 828, 1106, 1430
BlpI GCTNAGC 1 cut(s) 1026
BlsI GCNGC 6 cut(s) 313, 666, 724, 829, 1107, 1431
Bme1390I CCNGG 4 cut(s) 15, 492, 1034, 1259
BmeT110I CYCGRG 1 cut(s) 1477
BmgT120I GGNCC 2 cut(s) 494, 645
BmiI GGNNCC 4 cut(s) 143, 266, 342, 559
BmrFI CCNGG 4 cut(s) 15, 492, 1034, 1259
BmsI GCATC 7 cut(s) 171, 323, 404, 1231, 1387, 1534, 1594
BpmI CTGGAG 6 cut(s) 36, 62, 197, 576, 1060, 1454
Bpu1102I GCTNAGC 1 cut(s) 1026
BpuEI CTTGAG 2 cut(s) 1103, 1213
BsaHI GRCGYC 1 cut(s) 1503
BsaI GGTCTC 1 cut(s) 1177
BsaJI CCNNGG 3 cut(s) 491, 505, 641
Bsc4I CCNNNNNNNGG 6 cut(s) 261, 294, 492, 846, 1388, 1572
Bse1I ACTGG 9 cut(s) 45, 86, 180, 531, 691, 795, 840, 1043, 1534
Bse3DI GCAATG 1 cut(s) 250
BseBI CCWGG 4 cut(s) 15, 492, 1034, 1259
BseDI CCNNGG 3 cut(s) 491, 505, 641
BseGI GGATG 3 cut(s) 314, 1378, 1468
BseLI CCNNNNNNNGG 6 cut(s) 261, 294, 492, 846, 1388, 1572
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 5 cut(s) 153, 1017, 1143, 1188, 1508
BseNI ACTGG 9 cut(s) 45, 86, 180, 531, 691, 795, 840, 1043, 1534
BseRI GAGGAG 1 cut(s) 1439
BseXI GCAGC 4 cut(s) 323, 676, 839, 1441
BseYI CCCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 1108
BshFI GGCC 2 cut(s) 496, 647
BsiHKAI GWGCWC 1 cut(s) 1032
BsiHKCI CYCGRG 1 cut(s) 1477
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 6 cut(s) 261, 294, 492, 846, 1388, 1572
BsmAI GTCTC 4 cut(s) 292, 1177, 1474, 1494
BsmBI CGTCTC 1 cut(s) 1494
BsmFI GGGAC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 1050
BsnI GGCC 2 cut(s) 496, 647
Bso31I GGTCTC 1 cut(s) 1177
BsoBI CYCGRG 1 cut(s) 1477
Bsp1286I GDGCHC 1 cut(s) 1032
Bsp1407I TGTACA 2 cut(s) 777, 1272
Bsp143I GATC 6 cut(s) 21, 251, 340, 707, 882, 1399
Bsp1720I GCTNAGC 1 cut(s) 1026
BspACI CCGC 6 cut(s) 356, 567, 660, 722, 1106, 1490
BspANI GGCC 2 cut(s) 496, 647
BspCNI CTCAG 5 cut(s) 154, 1018, 1144, 1187, 1509
BspFNI CGCG 1 cut(s) 1108
BspLI GGNNCC 4 cut(s) 143, 266, 342, 559
BspMAI CTGCAG 1 cut(s) 1603
BspMI ACCTGC 2 cut(s) 394, 400
BspPI GGATC 5 cut(s) 29, 246, 335, 348, 1394
BspQI GCTCTTC 1 cut(s) 942
BspTI CTTAAG 1 cut(s) 701
BspTNI GGTCTC 1 cut(s) 1177
BsrDI GCAATG 1 cut(s) 250
BsrGI TGTACA 2 cut(s) 777, 1272
BsrI ACTGG 9 cut(s) 45, 86, 180, 531, 691, 795, 840, 1043, 1534
BssECI CCNNGG 3 cut(s) 491, 505, 641
BssMI GATC 6 cut(s) 21, 251, 340, 707, 882, 1399
BssNI GRCGYC 1 cut(s) 1503
BssT1I CCWWGG 2 cut(s) 505, 641
Bst2UI CCWGG 4 cut(s) 15, 492, 1034, 1259
Bst4CI ACNGT 4 cut(s) 101, 634, 775, 1277
Bst6I CTCTTC 1 cut(s) 942
BstACI GRCGYC 1 cut(s) 1503
BstAFI CTTAAG 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 836
BstAUI TGTACA 2 cut(s) 777, 1272
BstC8I GCNNGC 2 cut(s) 662, 1609
BstDEI CTNAG 6 cut(s) 146, 162, 1026, 1152, 1174, 1517
BstF5I GGATG 3 cut(s) 314, 1378, 1468
BstFNI CGCG 1 cut(s) 1108
BstKTI GATC 6 cut(s) 24, 254, 343, 710, 885, 1402
BstMAI GTCTC 4 cut(s) 292, 1177, 1474, 1494
BstMBI GATC 6 cut(s) 21, 251, 340, 707, 882, 1399
BstMWI GCNNNNNNNGC 5 cut(s) 551, 824, 836, 1105, 1435
BstNI CCWGG 4 cut(s) 15, 492, 1034, 1259
BstSCI CCNGG 4 cut(s) 13, 490, 1032, 1257
BstSFI CTRYAG 1 cut(s) 1599
BstUI CGCG 1 cut(s) 1108
BstV1I GCAGC 4 cut(s) 323, 676, 839, 1441
BstX2I RGATCY 2 cut(s) 251, 340
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 2 cut(s) 251, 340
BsuI GTATCC 1 cut(s) 1561
BsuRI GGCC 2 cut(s) 496, 647
BtsCI GGATG 3 cut(s) 314, 1378, 1468
BtsI GCAGTG 1 cut(s) 1506
BtsIMutI CAGTG 6 cut(s) 79, 173, 780, 802, 847, 1506
BveI ACCTGC 2 cut(s) 394, 400
Cac8I GCNNGC 2 cut(s) 662, 1609
Cfr13I GGNCC 2 cut(s) 494, 645
CseI GACGC 1 cut(s) 624
Csp6I GTAC 5 cut(s) 692, 753, 771, 778, 1273
CviAII CATG 1 cut(s) 293
CviQI GTAC 5 cut(s) 692, 753, 771, 778, 1273
DdeI CTNAG 6 cut(s) 146, 162, 1026, 1152, 1174, 1517
DpnI GATC 6 cut(s) 23, 253, 342, 709, 884, 1401
DpnII GATC 6 cut(s) 21, 251, 340, 707, 882, 1399
Eam1104I CTCTTC 1 cut(s) 942
EarI CTCTTC 1 cut(s) 942
Eco130I CCWWGG 2 cut(s) 505, 641
Eco31I GGTCTC 1 cut(s) 1177
Eco57I CTGAAG 5 cut(s) 55, 462, 653, 1121, 1224
Eco88I CYCGRG 1 cut(s) 1477
EcoRII CCWGG 4 cut(s) 13, 490, 1032, 1257
EcoT14I CCWWGG 2 cut(s) 505, 641
ErhI CCWWGG 2 cut(s) 505, 641
Esp3I CGTCTC 1 cut(s) 1494
FaeI CATG 1 cut(s) 296
FaqI GGGAC 1 cut(s) 498
FatI CATG 1 cut(s) 292
FauI CCCGC 1 cut(s) 653
FauNDI CATATG 1 cut(s) 1089
FblI GTMKAC 4 cut(s) 90, 201, 1312, 1329
Fnu4HI GCNGC 6 cut(s) 312, 665, 723, 828, 1106, 1430
FokI GGATG 3 cut(s) 301, 1365, 1455
Fsp4HI GCNGC 6 cut(s) 312, 665, 723, 828, 1106, 1430
FspBI CTAG 5 cut(s) 128, 333, 960, 1409, 1612
GluI GCNGC 6 cut(s) 312, 665, 723, 828, 1106, 1430
GsaI CCCAGC 1 cut(s) 308
GsuI CTGGAG 6 cut(s) 36, 62, 197, 576, 1060, 1454
HaeIII GGCC 2 cut(s) 496, 647
HgaI GACGC 1 cut(s) 624
Hin1I GRCGYC 1 cut(s) 1503
Hin1II CATG 1 cut(s) 296
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 6 cut(s) 117, 233, 715, 1056, 1314, 1412
HphI GGTGA 7 cut(s) 393, 399, 405, 411, 417, 423, 753
Hpy166II GTNNAC 8 cut(s) 91, 202, 692, 778, 904, 1273, 1313, 1330
Hpy188I TCNGA 7 cut(s) 26, 672, 712, 1177, 1240, 1360, 1499
Hpy188III TCNNGA 6 cut(s) 161, 1189, 1230, 1303, 1409, 1472
Hpy8I GTNNAC 8 cut(s) 91, 202, 692, 778, 904, 1273, 1313, 1330
Hpy99I CGWCG 1 cut(s) 206
HpyCH4III ACNGT 4 cut(s) 101, 634, 775, 1277
HpyCH4IV ACGT 1 cut(s) 1503
HpyF10VI GCNNNNNNNGC 5 cut(s) 551, 824, 836, 1105, 1435
HpyF3I CTNAG 6 cut(s) 146, 162, 1026, 1152, 1174, 1517
HpySE526I ACGT 1 cut(s) 1503
Hsp92I GRCGYC 1 cut(s) 1503
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 6 cut(s) 21, 251, 340, 707, 882, 1399
LguI GCTCTTC 1 cut(s) 942
LmnI GCTCC 8 cut(s) 147, 308, 382, 557, 988, 1375, 1426, 1435
Lsp1109I GCAGC 4 cut(s) 323, 676, 839, 1441
LweI GCATC 7 cut(s) 171, 323, 404, 1231, 1387, 1534, 1594
MaeI CTAG 5 cut(s) 128, 333, 960, 1409, 1612
MaeII ACGT 1 cut(s) 1503
MaeIII GTNAC 4 cut(s) 682, 1180, 1303, 1504
MalI GATC 6 cut(s) 23, 253, 342, 709, 884, 1401
MboI GATC 6 cut(s) 21, 251, 340, 707, 882, 1399
MboII GAAGA 9 cut(s) 390, 743, 750, 889, 892, 956, 959, 1125, 1358
MflI RGATCY 2 cut(s) 251, 340
MhlI GDGCHC 1 cut(s) 1032
MluCI AATT 9 cut(s) 9, 103, 585, 807, 856, 913, 1287, 1440, 1458
MlyI GAGTC 1 cut(s) 1308
MmeI TCCRAC 2 cut(s) 467, 1427
MnlI CCTC 9 cut(s) 11, 37, 330, 354, 496, 934, 1147, 1364, 1417
MseI TTAA 2 cut(s) 656, 702
MslI CAYNNNNRTG 1 cut(s) 962
MspA1I CMGCKG 3 cut(s) 304, 1099, 1432
MspCI CTTAAG 1 cut(s) 701
MspR9I CCNGG 4 cut(s) 15, 492, 1034, 1259
Mva1269I GAATGC 1 cut(s) 1050
MvaI CCWGG 4 cut(s) 15, 492, 1034, 1259
MvnI CGCG 1 cut(s) 1108
MwoI GCNNNNNNNGC 5 cut(s) 551, 824, 836, 1105, 1435
NdeI CATATG 1 cut(s) 1089
NdeII GATC 6 cut(s) 21, 251, 340, 707, 882, 1399
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 4 cut(s) 143, 266, 342, 559
NmeAIII GCCGAG 1 cut(s) 1234
NmuCI GTSAC 3 cut(s) 1180, 1303, 1504
PaqCI CACCTGC 2 cut(s) 394, 400
PciSI GCTCTTC 1 cut(s) 942
PctI GAATGC 1 cut(s) 1050
PfeI GAWTC 5 cut(s) 117, 233, 715, 1056, 1412
PflMI CCANNNNNTGG 2 cut(s) 846, 1572
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 6 cut(s) 313, 666, 724, 829, 1107, 1431
PleI GAGTC 1 cut(s) 1308
PpsI GAGTC 1 cut(s) 1308
Psp6I CCWGG 4 cut(s) 13, 490, 1032, 1257
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 4 cut(s) 13, 490, 1032, 1257
PspN4I GGNNCC 4 cut(s) 143, 266, 342, 559
PspPI GGNCC 2 cut(s) 494, 645
PstI CTGCAG 1 cut(s) 1603
PsuI RGATCY 2 cut(s) 251, 340
PvuII CAGCTG 3 cut(s) 304, 1099, 1432
RsaI GTAC 5 cut(s) 693, 754, 772, 779, 1274
RsaNI GTAC 5 cut(s) 692, 753, 771, 778, 1273
RseI CAYNNNNRTG 1 cut(s) 962
SalI GTCGAC 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 942
SaqAI TTAA 2 cut(s) 656, 702
SatI GCNGC 6 cut(s) 312, 665, 723, 828, 1106, 1430
Sau3AI GATC 6 cut(s) 21, 251, 340, 707, 882, 1399
Sau96I GGNCC 2 cut(s) 494, 645
SchI GAGTC 1 cut(s) 1308
ScrFI CCNGG 4 cut(s) 15, 492, 1034, 1259
SduI GDGCHC 1 cut(s) 1032
SfaNI GCATC 7 cut(s) 171, 323, 404, 1231, 1387, 1534, 1594
SfcI CTRYAG 1 cut(s) 1599
SmiMI CAYNNNNRTG 1 cut(s) 962
SmlI CTYRAG 3 cut(s) 701, 1082, 1228
SmoI CTYRAG 3 cut(s) 701, 1082, 1228
Sse9I AATT 9 cut(s) 9, 103, 585, 807, 856, 913, 1287, 1440, 1458
SsiI CCGC 6 cut(s) 356, 567, 660, 722, 1106, 1490
SspMI CTAG 5 cut(s) 128, 333, 960, 1409, 1612
StyD4I CCNGG 4 cut(s) 13, 490, 1032, 1257
StyI CCWWGG 2 cut(s) 505, 641
TaaI ACNGT 4 cut(s) 101, 634, 775, 1277
TaiI ACGT 1 cut(s) 1506
TaqI TCGA 5 cut(s) 201, 804, 885, 896, 1002
TasI AATT 9 cut(s) 9, 103, 585, 807, 856, 913, 1287, 1440, 1458
TatI WGTACW 2 cut(s) 777, 1272
TauI GCSGC 2 cut(s) 725, 1108
TfiI GAWTC 5 cut(s) 117, 233, 715, 1056, 1412
Tru1I TTAA 2 cut(s) 656, 702
Tru9I TTAA 2 cut(s) 656, 702
TscAI CASTG 6 cut(s) 79, 180, 780, 802, 847, 1513
TseFI GTSAC 3 cut(s) 1180, 1303, 1504
TseI GCWGC 4 cut(s) 311, 664, 827, 1429
Tsp45I GTSAC 3 cut(s) 1180, 1303, 1504
TspDTI ATGAA 2 cut(s) 99, 261
TspRI CASTG 6 cut(s) 79, 180, 780, 802, 847, 1513
Van91I CCANNNNNTGG 2 cut(s) 846, 1572
Vha464I CTTAAG 1 cut(s) 701
XapI RAATTY 2 cut(s) 913, 1458
XbaI TCTAGA 1 cut(s) 1408
XmiI GTMKAC 4 cut(s) 90, 201, 1312, 1329
XspI CTAG 5 cut(s) 128, 333, 960, 1409, 1612
ZraI GACGTC 1 cut(s) 1504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.