Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009831

Physical Location & Seq

Genomic Coordinates Reverse (-)

60336748 .. 60341428

Gene Structure 4681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG369400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAAGGATCAGTGGAGGTTCAATCGGTTTAGAGACCCCTTGGGGGTTGTGGGTGTGGTGGTTGTGTGGTTGCTGTTTCAGAATCTGAGCTTGTGTTGGTCTTTGAATGACGAAGGTTTGGCGCTTTTGAGGTTTAGAGAGAGAGTAGTGAGTGACCCATTGGGTGCTTTGTCGAACTGGAATGATGAAGATGGAGAGATTGACCCTTGCTCTTGGTTTGGGGTTGAATGCTCAGAGGGAGAAGTTGTGGTCTTGAACTTGAAAGATCTTTGTCTTGGAGGAACGTTATCACCTGAGCTCAGAAACCTTGTTCATATAAAGTCTATTATTTTGCGCAACAACTCCTTTATGGGGATAATTCCTGGAGGGATCGGAGAGTTGAAGGAACTGGAGGTGTTAGACTTGGGATATAATAACTTCAGTGGAACACTTCCAGTAGACCTTGACAGTAATTTTTCATTGAGAATCCTGCTACTAGATAACAACAGGCTCCTTAGTATCTTATCTCCTGAGATTTATGCACTGGAGATGCTTTCCCAATATCAAGTCGACGAAAACCAACTTTCTGGTGCAACCAGAGAATCATCGTGCAATGAAAGATCCATTTCAAGGAACCTTGCTAATACTGAACACTCCTATCATGGGAGACAGCTGGTAGCAGCATCCCATCCAAATCGTCCTAGCTTGGATCCTCCCAACGAACCGCCACAGACAGAACCATCTGCTCCTACACCTGCACCTGCATCTTCACCTTCACCTTCACCTTCACCTTCACCTTCACCTTCACCTTCTGTTCCAACTTCCCCACCAACCACATCTGCTTCTCCACCTTCAGTTTCTTCTCCTGAGCCTTCCCCCCAAGAAAGTCCCCCAAAGGAAAGTTCCAGTCATCGTGTTGCAATAATGGCTGGAGCCATAGGCGGTGGTGGTTCTTTTGTAATTTTAGTTGTTGGGTTGTATTTCTATGGACGCAACAAGGTAGCTACTGTCAAACCTTGGGCCACAGGATTAAGCGGGCAGCTTCAGAAAGCCTTTGTAACTGGTATTGCTTCTTTCGTAATGGAGAAAATTGATCTCTGTGTACCAAATCTTAAGAGATCGGAGATTCAAGCGGCTTGTGAAGATTTCAGTAATGTTATAGGTACTTCTTCACCGATGGGTACAGTGTACAAAGGAACATTATCCAGTGGTGTCGAAATTGCTGTGGCTTCTCTCGCAGCAACATCTGCCAGTGGTTGGGGCAACAATTTAGAGTTGCAGTTTAGGAAGAAGGTACTAAACAATTTAAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

431

Amino Acids

46.37

Weight (kDa)

5.15

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	35 - 78	3.8e-12	Leucine rich repeat N-terminal domain
LRR_8	PF13855	105 - 164	1.5e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40270 AT2G40270 AT3G56050 AT3G56050
fragaria_vesca	FvH4_7g24950 FvH4_7g24950 FvH4_7g24950
malus_domestica	MD01G1156900.v1.1
prunus_persica	Prupe.2G254500_v2.0.a1
pyrus_communis	pycom01g17370
rosa_chinensis	RchiOBHm_Chr1g0370831
rosa_laevigata	RLG00000027005
rosa_multiflora	Rmu_sc0009474.1_g000013
rosa_roxburghii	Rroxscaffold_4G00286200
rosa_rugosa	Rorug01G0359900
rosa_samantha	Rh1AG369400 Rh1BG332800 Rh1BG332900 Rh1CG346500 Rh1DG364100
rosa_wichuraiana	Rw1G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	742, 748
Acc16I	TGCGCA	1 cut(s)	335
Acc36I	ACCTGC	2 cut(s)	742, 748
AccB7I	CCANNNNNTGG	1 cut(s)	1236
AccI	GTMKAC	2 cut(s)	438, 549
AciI	CCGC	4 cut(s)	704, 921, 1014, 1112
AclI	AACGTT	1 cut(s)	284
AclWI	GGATC	5 cut(s)	15, 377, 594, 683, 696
AcuI	CTGAAG	3 cut(s)	403, 816, 1007
AfaI	GTAC	5 cut(s)	1083, 1144, 1162, 1169, 1275
AfiI	CCNNNNNNNGG	5 cut(s)	43, 351, 609, 642, 1236
AflII	CTTAAG	1 cut(s)	1091
AgsI	TTSAA	8 cut(s)	22, 106, 227, 256, 262, 382, 609, 1109
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	865, 897
AluBI	AGCT	7 cut(s)	90, 298, 652, 684, 983, 1021, 1291
AluI	AGCT	7 cut(s)	90, 298, 652, 684, 983, 1021, 1291
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	27, 640
AlwI	GGATC	5 cut(s)	15, 377, 594, 683, 696
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	999
ApeKI	GCWGC	3 cut(s)	659, 1018, 1217
AspLEI	GCGC	2 cut(s)	124, 336
AspS9I	GGNCC	1 cut(s)	999
AsuHPI	GGTGA	9 cut(s)	282, 741, 747, 753, 759, 765, 771, 777, 1143
BamHI	GGATCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	671, 1030, 1229
BccI	CCATC	4 cut(s)	185, 675, 727, 1150
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	27, 640
BfaI	CTAG	2 cut(s)	476, 681
BfoI	RGCGCY	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	1091
BfuAI	ACCTGC	2 cut(s)	742, 748
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	4 cut(s)	660, 1019, 1113, 1218
BlsI	GCNGC	4 cut(s)	661, 1020, 1114, 1219
Bme1390I	CCNGG	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	999
BmiI	GGNNCC	4 cut(s)	491, 614, 690, 913
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	3 cut(s)	519, 671, 752
BpmI	CTGGAG	4 cut(s)	384, 410, 545, 930
Bpu10I	CCTNAGC	2 cut(s)	294, 846
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	39, 995
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 351, 609, 642, 1236
Bse1I	ACTGG	8 cut(s)	182, 393, 434, 528, 885, 1045, 1185, 1230
Bse3DI	GCAATG	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	39, 995
BseGI	GGATG	2 cut(s)	662, 667
BseLI	CCNNNNNNNGG	5 cut(s)	43, 351, 609, 642, 1236
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	6 cut(s)	77, 246, 285, 313, 501, 837
BseNI	ACTGG	8 cut(s)	182, 393, 434, 528, 885, 1045, 1185, 1230
BseXI	GCAGC	3 cut(s)	671, 1030, 1229
BsgI	GTGCAG	1 cut(s)	720
BshFI	GGCC	1 cut(s)	1001
BsiHKAI	GWGCWC	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	5 cut(s)	43, 351, 609, 642, 1236
BsmAI	GTCTC	2 cut(s)	27, 640
BsmFI	GGGAC	1 cut(s)	852
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	1001
Bso31I	GGTCTC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	1167
Bsp143I	GATC	7 cut(s)	7, 265, 369, 599, 688, 1072, 1097
BspACI	CCGC	4 cut(s)	704, 921, 1014, 1112
BspANI	GGCC	1 cut(s)	1001
BspCNI	CTCAG	6 cut(s)	78, 245, 286, 312, 502, 838
BspLI	GGNNCC	4 cut(s)	491, 614, 690, 913
BspMI	ACCTGC	2 cut(s)	742, 748
BspPI	GGATC	5 cut(s)	15, 377, 594, 683, 696
BspTI	CTTAAG	1 cut(s)	1091
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	598
BsrGI	TGTACA	1 cut(s)	1167
BsrI	ACTGG	8 cut(s)	182, 393, 434, 528, 885, 1045, 1185, 1230
BssECI	CCNNGG	2 cut(s)	39, 995
BssMI	GATC	7 cut(s)	7, 265, 369, 599, 688, 1072, 1097
BssT1I	CCWWGG	2 cut(s)	39, 995
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	449, 988, 1165
BstAFI	CTTAAG	1 cut(s)	1091
BstAPI	GCANNNNNTGC	1 cut(s)	1226
BstAUI	TGTACA	1 cut(s)	1167
BstC8I	GCNNGC	1 cut(s)	1016
BstDEI	CTNAG	7 cut(s)	86, 232, 294, 299, 494, 510, 846
BstF5I	GGATG	2 cut(s)	662, 667
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	124, 336
BstKTI	GATC	7 cut(s)	10, 268, 372, 602, 691, 1075, 1100
BstMAI	GTCTC	2 cut(s)	27, 640
BstMBI	GATC	7 cut(s)	7, 265, 369, 599, 688, 1072, 1097
BstMWI	GCNNNNNNNGC	3 cut(s)	905, 1214, 1226
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	3 cut(s)	671, 1030, 1229
BstX2I	RGATCY	3 cut(s)	265, 599, 688
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	3 cut(s)	265, 599, 688
BsuRI	GGCC	1 cut(s)	1001
BtsCI	GGATG	2 cut(s)	662, 667
BtsIMutI	CAGTG	6 cut(s)	17, 427, 521, 1170, 1192, 1237
BveI	ACCTGC	2 cut(s)	742, 748
Cac8I	GCNNGC	1 cut(s)	1016
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	2 cut(s)	124, 336
Cfr13I	GGNCC	1 cut(s)	999
CseI	GACGC	1 cut(s)	978
Csp6I	GTAC	5 cut(s)	1082, 1143, 1161, 1168, 1274
CviAII	CATG	1 cut(s)	641
CviQI	GTAC	5 cut(s)	1082, 1143, 1161, 1168, 1274
DdeI	CTNAG	7 cut(s)	86, 232, 294, 299, 494, 510, 846
DpnI	GATC	7 cut(s)	9, 267, 371, 601, 690, 1074, 1099
DpnII	GATC	7 cut(s)	7, 265, 369, 599, 688, 1072, 1097
DraI	TTTAAA	1 cut(s)	1287
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	39, 995
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	3 cut(s)	403, 816, 1007
EcoICRI	GAGCTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	39, 995
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	2 cut(s)	39, 995
FaeI	CATG	1 cut(s)	644
FaqI	GGGAC	1 cut(s)	852
FatI	CATG	1 cut(s)	640
FauI	CCCGC	1 cut(s)	1007
FblI	GTMKAC	2 cut(s)	438, 549
Fnu4HI	GCNGC	4 cut(s)	660, 1019, 1113, 1218
FokI	GGATG	2 cut(s)	649, 654
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	4 cut(s)	660, 1019, 1113, 1218
FspBI	CTAG	2 cut(s)	476, 681
FspI	TGCGCA	1 cut(s)	335
GlaI	GCGC	2 cut(s)	123, 335
GluI	GCNGC	4 cut(s)	660, 1019, 1113, 1218
GsuI	CTGGAG	4 cut(s)	384, 410, 545, 930
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	1001
HgaI	GACGC	1 cut(s)	978
HhaI	GCGC	2 cut(s)	124, 336
Hin1II	CATG	1 cut(s)	644
Hin6I	GCGC	2 cut(s)	122, 334
HinP1I	GCGC	2 cut(s)	122, 334
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	4 cut(s)	82, 465, 581, 1105
HphI	GGTGA	9 cut(s)	282, 741, 747, 753, 759, 765, 771, 777, 1143
Hpy166II	GTNNAC	4 cut(s)	439, 550, 1082, 1168
Hpy188I	TCNGA	7 cut(s)	81, 87, 235, 302, 374, 1026, 1102
Hpy188III	TCNNGA	3 cut(s)	253, 509, 845
Hpy8I	GTNNAC	4 cut(s)	439, 550, 1082, 1168
Hpy99I	CGWCG	1 cut(s)	554
HpyCH4III	ACNGT	3 cut(s)	449, 988, 1165
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	7 cut(s)	521, 572, 591, 737, 743, 899, 1258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	905, 1214, 1226
HpyF3I	CTNAG	7 cut(s)	86, 232, 294, 299, 494, 510, 846
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	644
HspAI	GCGC	2 cut(s)	122, 334
Kzo9I	GATC	7 cut(s)	7, 265, 369, 599, 688, 1072, 1097
LmnI	GCTCC	3 cut(s)	495, 730, 911
Lsp1109I	GCAGC	3 cut(s)	671, 1030, 1229
LweI	GCATC	3 cut(s)	519, 671, 752
MaeI	CTAG	2 cut(s)	476, 681
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	2 cut(s)	152, 1036
MalI	GATC	7 cut(s)	9, 267, 371, 601, 690, 1074, 1099
MboI	GATC	7 cut(s)	7, 265, 369, 599, 688, 1072, 1097
MboII	GAAGA	6 cut(s)	200, 738, 831, 1133, 1140, 1279
MflI	RGATCY	3 cut(s)	265, 599, 688
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	7 cut(s)	357, 451, 939, 1068, 1197, 1246, 1282
MmeI	TCCRAC	1 cut(s)	821
MnlI	CCTC	7 cut(s)	9, 123, 229, 272, 359, 385, 702
MseI	TTAA	3 cut(s)	1010, 1092, 1286
MspA1I	CMGCKG	1 cut(s)	652
MspCI	CTTAAG	1 cut(s)	1091
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	3 cut(s)	905, 1214, 1226
NdeII	GATC	7 cut(s)	7, 265, 369, 599, 688, 1072, 1097
NlaIII	CATG	1 cut(s)	644
NlaIV	GGNNCC	4 cut(s)	491, 614, 690, 913
NmuCI	GTSAC	1 cut(s)	152
NsbI	TGCGCA	1 cut(s)	335
PaqCI	CACCTGC	2 cut(s)	742, 748
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	4 cut(s)	82, 465, 581, 1105
PflMI	CCANNNNNTGG	1 cut(s)	1236
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	4 cut(s)	661, 1020, 1114, 1219
Psp124BI	GAGCTC	1 cut(s)	300
Psp1406I	AACGTT	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	4 cut(s)	491, 614, 690, 913
PspPI	GGNCC	1 cut(s)	999
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	3 cut(s)	265, 599, 688
PvuII	CAGCTG	1 cut(s)	652
RsaI	GTAC	5 cut(s)	1083, 1144, 1162, 1169, 1275
RsaNI	GTAC	5 cut(s)	1082, 1143, 1161, 1168, 1274
SacI	GAGCTC	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	548
SaqAI	TTAA	3 cut(s)	1010, 1092, 1286
SatI	GCNGC	4 cut(s)	660, 1019, 1113, 1218
Sau3AI	GATC	7 cut(s)	7, 265, 369, 599, 688, 1072, 1097
Sau96I	GGNCC	1 cut(s)	999
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	3 cut(s)	519, 671, 752
SmlI	CTYRAG	1 cut(s)	1091
SmoI	CTYRAG	1 cut(s)	1091
Sse9I	AATT	7 cut(s)	357, 451, 939, 1068, 1197, 1246, 1282
SsiI	CCGC	4 cut(s)	704, 921, 1014, 1112
SspMI	CTAG	2 cut(s)	476, 681
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	2 cut(s)	39, 995
TaaI	ACNGT	3 cut(s)	449, 988, 1165
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	3 cut(s)	173, 549, 1194
TasI	AATT	7 cut(s)	357, 451, 939, 1068, 1197, 1246, 1282
TatI	WGTACW	1 cut(s)	1167
TauI	GCSGC	1 cut(s)	1115
TfiI	GAWTC	4 cut(s)	82, 465, 581, 1105
Tru1I	TTAA	3 cut(s)	1010, 1092, 1286
Tru9I	TTAA	3 cut(s)	1010, 1092, 1286
TscAI	CASTG	6 cut(s)	17, 427, 528, 1170, 1192, 1237
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	3 cut(s)	659, 1018, 1217
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	5 cut(s)	17, 201, 302, 447, 609
TspRI	CASTG	6 cut(s)	17, 427, 528, 1170, 1192, 1237
Van91I	CCANNNNNTGG	1 cut(s)	1236
Vha464I	CTTAAG	1 cut(s)	1091
XmiI	GTMKAC	2 cut(s)	438, 549
XspI	CTAG	2 cut(s)	476, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.