RLG00000027005

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
7645583 .. 7648799
3217 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027005

Sequence Viewer

Length: 1884 bp
ATGAAGGATCAGTGGAGGTTCAATCGGTTTAGAGACCCTTTGGGGGTTGTGGGTGTGGTGGTTGTGTGGTTGCTGTTTCAGAATCTGAGCTTGTGTTGGTCTTTGAATGATGAAGGTTTGGCGCTTTTGAGGTTTAGAGAGAGAGTAGTGAGCGACCCATTTGGTGCTTTGTCGAACTGGAATGATGAAGATGGAGAGATTGACCCTTGCTCTTGGTTTGGGGTTGAATGCTCAGAGGGAAAAGTTGTGGTCTTTATTTTGCGCAACAACTCCTTTGTGGGGATAATTCCTGGAGGGATCGGTGAGTTGAAGGAACTGGAGGTGTTAGACTTGGGATATAATAACTTCAGTGGAACACTTCCAGTAGACCTTGACAGTAATTTTTCATTGAGAATCCTGCTAGTAGATAACAACAGGCTCCTTAGTATCTTATCTCCTGAGATTCATGCACTGGAGATGCTTTCCCAATATCAAGTTGACGAAAACCAACTTTCTGGTGCAACCAGAGAATCATCGTGCAATGAAAGATCCATTTCAAGGAACCTTGCTAATACTGAACACTCCTATCATGGGAGACAGCTGGGAGGAGCATCCCCTCCAAATCTTCCTAGCTTGAAACCTCCCAACGAACCACCAAAGACAGAATCATCTGCTCCTACACCTGCACCTGCACCTGCATCTTCACCTTCACCTTCACCTTCACCTTCTGTTCCAACTTCCCCACCAACCACATCTGCTTCTCCACCTTCAGTTTCCTCTCCTGGGCCTTCTCCCCAAGACAGTTCCCCAAAGGAAAGTTCCAGTCATCGTGTTGCAATAATGGCTGGAGCCATAGGCGGTGGTGGTTTTCTTGTAATTTTAGTTATTGGGTTGTATTTCTATGGACACAACAAGGTAGCTACTGTCAAACCTTGGGCCACAGGATTAAGCGGGCAGCTTCAGAAAGCCTTTGTAACTGGTGTACCAAATCTTAAGAGATCGGAGATTCAAGCGGCTTGTGAAGATTTCAGTAATGTTATAGGTACTTCTTCACCGATGGGTACAGTGTACAAAGGAACATTATCCAGTGGTGTCGAAATTGCTGTGGCTTCTCTCGCAGCAACATCTGCCAGTGGTTGGGGCAACAATTTAGAGTTGCAGTTTAGGAAGAAGATCGACACATTATCGAAAGTGAACCACAAGAATTTTGTCAGCCTCATTGGATATTGCGAGGAAGAAGAGCCTTTCACTAGAATGATGGTTTTTGAATATGCTCCCAATGGCACACTTTTCGAGCATTTACACATAAAAGAAGCTGAGCACCTGGACTGGAGAATGCGAATGAGAATCTCAATGGGAATGGCCTACTGCCTTGAGCATATGCACCAGCTGAAGCCGCCTATAGCTCACAACAACTTGACTTCTTCAGCTGTCCAGCTAACGGAGGATTATGCACCGAAGGTCTCAGAAGTCACTTTCTGGAATGAGATAGCTGAAGCCGAGAAACAATCATCTGGCTCAAGACTTCCTGATTCACAATCAACAAGCCTGGAAAGTAATGTGTACAGTTTTGGTGTAATTTTGTTTGAAATCGTGACAGGTAGACTCCCTTATTCAGTAGACAATGGCTCACTTGAAGACTGGGCTTCTGACTATTTGAGAGGGGAGCATCCCTTCAAGGGAATGGTTGATCCAAGTCTAGAATCTTTCCAAGAGGAGCAGCTGGAGCGAATTGGAGAAGTAATAAGAATTTGTGTCCATCCTGACCCGAGACAAAGACCGCCAATGAGAGACATCACTGCAAGGCTGAGAGAGATAACTGGACTTACACCTGATGCAGTATCCCCGAAACTCTCCACTCTTTGGTGGGCAGAGCTTGAACTTATGTCTGCAGATGCAAGCTAG

Protein Analysis

628

Amino Acids

68.77

Weight (kDa)

5.11

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 35 - 78 1e-11 Leucine rich repeat N-terminal domain
PK_Tyr_Ser-Thr PF07714 345 - 596 1.6e-21 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 346 - 592 6.3e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 670, 676, 682
Acc16I TGCGCA 1 cut(s) 263
Acc36I ACCTGC 3 cut(s) 670, 676, 682
AccB7I CCANNNNNTGG 2 cut(s) 1116, 1842
AccI GTMKAC 3 cut(s) 366, 1582, 1599
AciI CCGC 5 cut(s) 837, 930, 992, 1376, 1760
AclWI GGATC 4 cut(s) 15, 305, 522, 1664
AcsI RAATTY 2 cut(s) 1183, 1728
AcuI CTGAAG 6 cut(s) 331, 732, 923, 1389, 1391, 1494
AfaI GTAC 5 cut(s) 963, 1024, 1042, 1049, 1544
AfiI CCNNNNNNNGG 9 cut(s) 43, 279, 537, 570, 762, 1116, 1420, 1658, 1842
AflII CTTAAG 1 cut(s) 971
AjnI CCWGG 4 cut(s) 289, 760, 1302, 1527
AjuI GAANNNNNNNTTGG 2 cut(s) 781, 813
Alw21I GWGCWC 1 cut(s) 1302
Alw26I GTCTC 5 cut(s) 27, 568, 1447, 1744, 1764
AlwI GGATC 4 cut(s) 15, 305, 522, 1664
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 1747
AoxI GGCC 3 cut(s) 764, 915, 1341
ApeKI GCWGC 3 cut(s) 934, 1097, 1699
ApoI RAATTY 2 cut(s) 1183, 1728
AspLEI GCGC 2 cut(s) 124, 264
AspS9I GGNCC 2 cut(s) 764, 915
AsuHPI GGTGA 6 cut(s) 314, 675, 681, 687, 693, 1023
AvaI CYCGRG 1 cut(s) 1747
BaeI ACNNNNGTAYC 2 cut(s) 945, 978
BbsI GAAGAC 1 cut(s) 1623
Bbv12I GWGCWC 1 cut(s) 1302
BbvI GCAGC 3 cut(s) 946, 1109, 1711
BccI CCATC 4 cut(s) 185, 1030, 1231, 1746
BcgI CGANNNNNNTGC 2 cut(s) 1252, 1286
BciT130I CCWGG 4 cut(s) 291, 762, 1304, 1529
BciVI GTATCC 1 cut(s) 1831
BcoDI GTCTC 5 cut(s) 27, 568, 1447, 1744, 1764
BfaI CTAG 5 cut(s) 401, 609, 1230, 1679, 1882
BfmI CTRYAG 2 cut(s) 1380, 1869
BfoI RGCGCY 1 cut(s) 125
BfrI CTTAAG 1 cut(s) 971
BfuAI ACCTGC 3 cut(s) 670, 676, 682
BfuI GTATCC 1 cut(s) 1831
BisI GCNGC 5 cut(s) 935, 993, 1098, 1376, 1700
BlpI GCTNAGC 1 cut(s) 1296
BlsI GCNGC 5 cut(s) 936, 994, 1099, 1377, 1701
Bme1390I CCNGG 4 cut(s) 291, 762, 1304, 1529
BmeT110I CYCGRG 1 cut(s) 1747
BmgT120I GGNCC 2 cut(s) 764, 915
BmiI GGNNCC 3 cut(s) 419, 542, 829
BmrFI CCNGG 4 cut(s) 291, 762, 1304, 1529
BmrI ACTGGG 1 cut(s) 1630
BmsI GCATC 6 cut(s) 447, 599, 686, 1657, 1804, 1864
BmuI ACTGGG 1 cut(s) 1630
BpiI GAAGAC 1 cut(s) 1623
BpmI CTGGAG 6 cut(s) 312, 338, 473, 846, 1330, 1724
Bpu1102I GCTNAGC 1 cut(s) 1296
BpuEI CTTGAG 2 cut(s) 1373, 1483
BsaI GGTCTC 2 cut(s) 27, 1447
BsaJI CCNNGG 2 cut(s) 761, 911
Bsc4I CCNNNNNNNGG 9 cut(s) 43, 279, 537, 570, 762, 1116, 1420, 1658, 1842
Bse3DI GCAATG 1 cut(s) 526
BseBI CCWGG 4 cut(s) 291, 762, 1304, 1529
BseDI CCNNGG 2 cut(s) 761, 911
BseGI GGATG 3 cut(s) 590, 1648, 1738
BseLI CCNNNNNNNGG 9 cut(s) 43, 279, 537, 570, 762, 1116, 1420, 1658, 1842
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 6 cut(s) 77, 246, 429, 1287, 1458, 1778
BseRI GAGGAG 2 cut(s) 600, 1709
BseXI GCAGC 3 cut(s) 946, 1109, 1711
BseYI CCCAGC 1 cut(s) 580
BsgI GTGCAG 2 cut(s) 648, 654
BshFI GGCC 3 cut(s) 766, 917, 1343
BsiHKAI GWGCWC 1 cut(s) 1302
BsiHKCI CYCGRG 1 cut(s) 1747
BslI CCNNNNNNNGG 9 cut(s) 43, 279, 537, 570, 762, 1116, 1420, 1658, 1842
BsmAI GTCTC 5 cut(s) 27, 568, 1447, 1744, 1764
BsmI GAATGC 2 cut(s) 233, 1320
BsnI GGCC 3 cut(s) 766, 917, 1343
Bso31I GGTCTC 2 cut(s) 27, 1447
BsoBI CYCGRG 1 cut(s) 1747
Bsp1286I GDGCHC 1 cut(s) 1302
Bsp1407I TGTACA 2 cut(s) 1047, 1542
Bsp143I GATC 6 cut(s) 7, 297, 527, 977, 1152, 1669
Bsp1720I GCTNAGC 1 cut(s) 1296
BspACI CCGC 5 cut(s) 837, 930, 992, 1376, 1760
BspANI GGCC 3 cut(s) 766, 917, 1343
BspCNI CTCAG 6 cut(s) 78, 245, 430, 1288, 1457, 1779
BspLI GGNNCC 3 cut(s) 419, 542, 829
BspMAI CTGCAG 1 cut(s) 1873
BspMI ACCTGC 3 cut(s) 670, 676, 682
BspPI GGATC 4 cut(s) 15, 305, 522, 1664
BspQI GCTCTTC 1 cut(s) 1212
BspTI CTTAAG 1 cut(s) 971
BspTNI GGTCTC 2 cut(s) 27, 1447
BsrDI GCAATG 1 cut(s) 526
BsrGI TGTACA 2 cut(s) 1047, 1542
BssECI CCNNGG 2 cut(s) 761, 911
BssMI GATC 6 cut(s) 7, 297, 527, 977, 1152, 1669
BssT1I CCWWGG 1 cut(s) 911
Bst2UI CCWGG 4 cut(s) 291, 762, 1304, 1529
Bst4CI ACNGT 5 cut(s) 377, 782, 904, 1045, 1547
Bst6I CTCTTC 1 cut(s) 1212
BstAFI CTTAAG 1 cut(s) 971
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstAUI TGTACA 2 cut(s) 1047, 1542
BstC8I GCNNGC 2 cut(s) 932, 1879
BstDEI CTNAG 7 cut(s) 86, 232, 422, 438, 1296, 1444, 1787
BstF5I GGATG 3 cut(s) 590, 1648, 1738
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 2 cut(s) 124, 264
BstKTI GATC 6 cut(s) 10, 300, 530, 980, 1155, 1672
BstMAI GTCTC 5 cut(s) 27, 568, 1447, 1744, 1764
BstMBI GATC 6 cut(s) 7, 297, 527, 977, 1152, 1669
BstMWI GCNNNNNNNGC 5 cut(s) 821, 1094, 1106, 1375, 1705
BstNI CCWGG 4 cut(s) 291, 762, 1304, 1529
BstSCI CCNGG 4 cut(s) 289, 760, 1302, 1527
BstSFI CTRYAG 2 cut(s) 1380, 1869
BstV1I GCAGC 3 cut(s) 946, 1109, 1711
BstV2I GAAGAC 1 cut(s) 1623
BstX2I RGATCY 1 cut(s) 527
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 1 cut(s) 527
BsuI GTATCC 1 cut(s) 1831
BsuRI GGCC 3 cut(s) 766, 917, 1343
BtsCI GGATG 3 cut(s) 590, 1648, 1738
BtsI GCAGTG 1 cut(s) 1776
BtsIMutI CAGTG 7 cut(s) 17, 355, 449, 1050, 1072, 1117, 1776
BveI ACCTGC 3 cut(s) 670, 676, 682
Cac8I GCNNGC 2 cut(s) 932, 1879
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 2 cut(s) 124, 264
Cfr13I GGNCC 2 cut(s) 764, 915
Csp6I GTAC 5 cut(s) 962, 1023, 1041, 1048, 1543
CviAII CATG 2 cut(s) 446, 569
CviQI GTAC 5 cut(s) 962, 1023, 1041, 1048, 1543
DdeI CTNAG 7 cut(s) 86, 232, 422, 438, 1296, 1444, 1787
DpnI GATC 6 cut(s) 9, 299, 529, 979, 1154, 1671
DpnII GATC 6 cut(s) 7, 297, 527, 977, 1152, 1669
Eam1104I CTCTTC 1 cut(s) 1212
EarI CTCTTC 1 cut(s) 1212
Eco130I CCWWGG 1 cut(s) 911
Eco31I GGTCTC 2 cut(s) 27, 1447
Eco57I CTGAAG 6 cut(s) 331, 732, 923, 1389, 1391, 1494
Eco88I CYCGRG 1 cut(s) 1747
EcoRII CCWGG 4 cut(s) 289, 760, 1302, 1527
EcoT14I CCWWGG 1 cut(s) 911
ErhI CCWWGG 1 cut(s) 911
FaeI CATG 2 cut(s) 449, 572
FatI CATG 2 cut(s) 445, 568
FauI CCCGC 1 cut(s) 923
FauNDI CATATG 1 cut(s) 1359
FblI GTMKAC 3 cut(s) 366, 1582, 1599
Fnu4HI GCNGC 5 cut(s) 935, 993, 1098, 1376, 1700
FokI GGATG 3 cut(s) 577, 1635, 1725
Fsp4HI GCNGC 5 cut(s) 935, 993, 1098, 1376, 1700
FspBI CTAG 5 cut(s) 401, 609, 1230, 1679, 1882
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 2 cut(s) 123, 263
GluI GCNGC 5 cut(s) 935, 993, 1098, 1376, 1700
GsaI CCCAGC 1 cut(s) 584
GsuI CTGGAG 6 cut(s) 312, 338, 473, 846, 1330, 1724
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 3 cut(s) 766, 917, 1343
HhaI GCGC 2 cut(s) 124, 264
Hin1II CATG 2 cut(s) 449, 572
Hin6I GCGC 2 cut(s) 122, 262
HinP1I GCGC 2 cut(s) 122, 262
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HphI GGTGA 6 cut(s) 314, 675, 681, 687, 693, 1023
Hpy166II GTNNAC 8 cut(s) 367, 478, 962, 1048, 1174, 1543, 1583, 1600
Hpy188I TCNGA 7 cut(s) 81, 87, 235, 942, 982, 1447, 1630
Hpy188III TCNNGA 7 cut(s) 437, 1459, 1500, 1508, 1573, 1679, 1742
Hpy8I GTNNAC 8 cut(s) 367, 478, 962, 1048, 1174, 1543, 1583, 1600
HpyCH4III ACNGT 5 cut(s) 377, 782, 904, 1045, 1547
HpyF10VI GCNNNNNNNGC 5 cut(s) 821, 1094, 1106, 1375, 1705
HpyF3I CTNAG 7 cut(s) 86, 232, 422, 438, 1296, 1444, 1787
Hsp92II CATG 2 cut(s) 449, 572
HspAI GCGC 2 cut(s) 122, 262
Kzo9I GATC 6 cut(s) 7, 297, 527, 977, 1152, 1669
LguI GCTCTTC 1 cut(s) 1212
LmnI GCTCC 8 cut(s) 423, 587, 658, 827, 1258, 1645, 1696, 1705
Lsp1109I GCAGC 3 cut(s) 946, 1109, 1711
LweI GCATC 6 cut(s) 447, 599, 686, 1657, 1804, 1864
MaeI CTAG 5 cut(s) 401, 609, 1230, 1679, 1882
MaeIII GTNAC 3 cut(s) 952, 1450, 1573
MalI GATC 6 cut(s) 9, 299, 529, 979, 1154, 1671
MboI GATC 6 cut(s) 7, 297, 527, 977, 1152, 1669
MflI RGATCY 1 cut(s) 527
MhlI GDGCHC 1 cut(s) 1302
MluCI AATT 9 cut(s) 285, 379, 855, 1077, 1126, 1183, 1557, 1710, 1728
MlyI GAGTC 1 cut(s) 1578
MmeI TCCRAC 1 cut(s) 737
MseI TTAA 2 cut(s) 926, 972
MslI CAYNNNNRTG 1 cut(s) 1232
MspA1I CMGCKG 4 cut(s) 580, 1369, 1409, 1702
MspCI CTTAAG 1 cut(s) 971
MspR9I CCNGG 4 cut(s) 291, 762, 1304, 1529
Mva1269I GAATGC 2 cut(s) 233, 1320
MvaI CCWGG 4 cut(s) 291, 762, 1304, 1529
MwoI GCNNNNNNNGC 5 cut(s) 821, 1094, 1106, 1375, 1705
NdeI CATATG 1 cut(s) 1359
NdeII GATC 6 cut(s) 7, 297, 527, 977, 1152, 1669
NlaIII CATG 2 cut(s) 449, 572
NlaIV GGNNCC 3 cut(s) 419, 542, 829
NmeAIII GCCGAG 1 cut(s) 1504
NmuCI GTSAC 2 cut(s) 1450, 1573
NsbI TGCGCA 1 cut(s) 263
PaqCI CACCTGC 3 cut(s) 670, 676, 682
PciSI GCTCTTC 1 cut(s) 1212
PctI GAATGC 2 cut(s) 233, 1320
PfeI GAWTC 9 cut(s) 82, 393, 442, 509, 644, 985, 1326, 1511, 1682
PflMI CCANNNNNTGG 2 cut(s) 1116, 1842
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 5 cut(s) 936, 994, 1099, 1377, 1701
PleI GAGTC 1 cut(s) 1578
PpsI GAGTC 1 cut(s) 1578
Psp6I CCWGG 4 cut(s) 289, 760, 1302, 1527
PspFI CCCAGC 1 cut(s) 580
PspGI CCWGG 4 cut(s) 289, 760, 1302, 1527
PspN4I GGNNCC 3 cut(s) 419, 542, 829
PspPI GGNCC 2 cut(s) 764, 915
PstI CTGCAG 1 cut(s) 1873
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 527
PvuII CAGCTG 4 cut(s) 580, 1369, 1409, 1702
RsaI GTAC 5 cut(s) 963, 1024, 1042, 1049, 1544
RsaNI GTAC 5 cut(s) 962, 1023, 1041, 1048, 1543
RseI CAYNNNNRTG 1 cut(s) 1232
SapI GCTCTTC 1 cut(s) 1212
SaqAI TTAA 2 cut(s) 926, 972
SatI GCNGC 5 cut(s) 935, 993, 1098, 1376, 1700
Sau3AI GATC 6 cut(s) 7, 297, 527, 977, 1152, 1669
Sau96I GGNCC 2 cut(s) 764, 915
SchI GAGTC 1 cut(s) 1578
ScrFI CCNGG 4 cut(s) 291, 762, 1304, 1529
SduI GDGCHC 1 cut(s) 1302
SfaNI GCATC 6 cut(s) 447, 599, 686, 1657, 1804, 1864
SfcI CTRYAG 2 cut(s) 1380, 1869
SmiMI CAYNNNNRTG 1 cut(s) 1232
SmlI CTYRAG 3 cut(s) 971, 1352, 1498
SmoI CTYRAG 3 cut(s) 971, 1352, 1498
Sse9I AATT 9 cut(s) 285, 379, 855, 1077, 1126, 1183, 1557, 1710, 1728
SsiI CCGC 5 cut(s) 837, 930, 992, 1376, 1760
SspMI CTAG 5 cut(s) 401, 609, 1230, 1679, 1882
StyD4I CCNGG 4 cut(s) 289, 760, 1302, 1527
StyI CCWWGG 1 cut(s) 911
TaaI ACNGT 5 cut(s) 377, 782, 904, 1045, 1547
TaqI TCGA 5 cut(s) 173, 1074, 1155, 1166, 1272
TasI AATT 9 cut(s) 285, 379, 855, 1077, 1126, 1183, 1557, 1710, 1728
TatI WGTACW 2 cut(s) 1047, 1542
TauI GCSGC 2 cut(s) 995, 1378
TfiI GAWTC 9 cut(s) 82, 393, 442, 509, 644, 985, 1326, 1511, 1682
Tru1I TTAA 2 cut(s) 926, 972
Tru9I TTAA 2 cut(s) 926, 972
TscAI CASTG 7 cut(s) 17, 355, 456, 1050, 1072, 1117, 1783
TseFI GTSAC 2 cut(s) 1450, 1573
TseI GCWGC 3 cut(s) 934, 1097, 1699
Tsp45I GTSAC 2 cut(s) 1450, 1573
TspDTI ATGAA 6 cut(s) 17, 126, 201, 375, 434, 537
TspGWI ACGGA 1 cut(s) 1436
TspRI CASTG 7 cut(s) 17, 355, 456, 1050, 1072, 1117, 1783
Van91I CCANNNNNTGG 2 cut(s) 1116, 1842
Vha464I CTTAAG 1 cut(s) 971
XapI RAATTY 2 cut(s) 1183, 1728
XbaI TCTAGA 1 cut(s) 1678
XmiI GTMKAC 3 cut(s) 366, 1582, 1599
XspI CTAG 5 cut(s) 401, 609, 1230, 1679, 1882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.