Rh1BG332800

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009831
Physical Location & Seq
Reverse (-)
46864163 .. 46864732
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG332800.1

Sequence Viewer

Length: 570 bp
ATGCGAATGAGAATCTCAATGGGAATGACCTACTGCCTTGAGCATATGCACCAGCTGAAGCCGCGTATAGCTCACAACAACTTGACTTCTTCTGCCGTCCAGCTAACTGAGGATTATGCACCGAAGGTCTCAGAAGTCACTTTCTGGAATGAGATAGCTGAAGCCGAGAAACAATCATCTGGCTCAAGACTTTCTGATGCACAATCAACAAGCCTGGAAAGTAATGTGTACAGTTTTGGTGTAATTTTGTTTGAAATCGTGACAGGTAGACTCCCTTATTCAGTAGACAATGGCTCACTTGAAGATTGGGCTTCTGACTATGTGAGAGGGGAGCATCCCTTCAAGGGAATGGTTGATCCAACTCTAGAATCTTTCCAAGAGGAGCAGCTGGAGCGAATTGGAGAAGTAATAAGAATTTGTGTCCATCCTGACCCGAGACAAAGACCGCCAATCAGAGACGTCACTGCAAGGCTGAGAGAGATAACTGGACTTACACCTGATGCAGTATCCCCGAAACTCTCCACTCTTTGGTGGGCAGAACTTGAACTTATGTCTGCAGATGCAAGCTAG

Protein Analysis

189

Amino Acids

21.37

Weight (kDa)

4.95

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 4 - 158 1.8e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009831)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40270 AT2G40270 AT3G56050 AT3G56050
fragaria_vesca FvH4_7g24950 FvH4_7g24950 FvH4_7g24950
malus_domestica MD01G1156900.v1.1
prunus_persica Prupe.2G254500_v2.0.a1
pyrus_communis pycom01g17370
rosa_chinensis RchiOBHm_Chr1g0370831
rosa_laevigata RLG00000027005
rosa_multiflora Rmu_sc0009474.1_g000013
rosa_roxburghii Rroxscaffold_4G00286200
rosa_rugosa Rorug01G0359900
rosa_samantha Rh1AG369400 Rh1BG332800 Rh1BG332900 Rh1CG346500 Rh1DG364100
rosa_wichuraiana Rw1G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
AccB7I CCANNNNNTGG 1 cut(s) 528
AccI GTMKAC 2 cut(s) 268, 285
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 62, 446
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 414
AcuI CTGAAG 2 cut(s) 77, 180
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 344, 528
AgsI TTSAA 4 cut(s) 254, 302, 343, 545
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 6 cut(s) 55, 71, 103, 158, 388, 567
AluI AGCT 6 cut(s) 55, 71, 103, 158, 388, 567
Alw26I GTCTC 3 cut(s) 133, 430, 450
AlwI GGATC 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 433
ApeKI GCWGC 1 cut(s) 385
ApoI RAATTY 1 cut(s) 414
AvaI CYCGRG 1 cut(s) 433
BbvI GCAGC 1 cut(s) 397
BccI CCATC 1 cut(s) 432
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 517
BcoDI GTCTC 3 cut(s) 133, 430, 450
BfaI CTAG 2 cut(s) 365, 568
BfmI CTRYAG 1 cut(s) 555
BfuI GTATCC 1 cut(s) 517
BisI GCNGC 2 cut(s) 62, 386
BlsI GCNGC 2 cut(s) 63, 387
Bme1390I CCNGG 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 433
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 4 cut(s) 187, 343, 490, 550
BpmI CTGGAG 1 cut(s) 410
BpuEI CTTGAG 2 cut(s) 59, 169
BsaHI GRCGYC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 528
Bse1I ACTGG 1 cut(s) 490
BseBI CCWGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 334, 424
BseLI CCNNNNNNNGG 2 cut(s) 344, 528
BseMII CTCAG 3 cut(s) 99, 144, 464
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 344, 528
BsmAI GTCTC 3 cut(s) 133, 430, 450
BsmBI CGTCTC 1 cut(s) 450
Bso31I GGTCTC 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 433
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 2 cut(s) 62, 446
BspCNI CTCAG 3 cut(s) 100, 143, 465
BspFNI CGCG 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 1 cut(s) 490
BssMI GATC 1 cut(s) 355
BssNI GRCGYC 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 233
BstACI GRCGYC 1 cut(s) 459
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 3 cut(s) 108, 130, 473
BstF5I GGATG 2 cut(s) 334, 424
BstFNI CGCG 1 cut(s) 64
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 3 cut(s) 133, 430, 450
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 61, 391
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 397
BsuI GTATCC 1 cut(s) 517
BtsCI GGATG 2 cut(s) 334, 424
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 1 cut(s) 565
Csp6I GTAC 1 cut(s) 229
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 3 cut(s) 108, 130, 473
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 77, 180
Eco88I CYCGRG 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 450
FaiI YATR 6 cut(s) 45, 47, 68, 117, 321, 551
FauNDI CATATG 1 cut(s) 45
FblI GTMKAC 2 cut(s) 268, 285
Fnu4HI GCNGC 2 cut(s) 62, 386
FokI GGATG 2 cut(s) 321, 411
Fsp4HI GCNGC 2 cut(s) 62, 386
FspBI CTAG 2 cut(s) 365, 568
GluI GCNGC 2 cut(s) 62, 386
GsuI CTGGAG 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 459
HinfI GANTC 3 cut(s) 12, 270, 368
Hpy166II GTNNAC 3 cut(s) 229, 269, 286
Hpy188I TCNGA 4 cut(s) 133, 196, 316, 455
Hpy188III TCNNGA 5 cut(s) 145, 186, 259, 365, 428
Hpy8I GTNNAC 3 cut(s) 229, 269, 286
HpyAV CCTTC 2 cut(s) 118, 349
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 7 cut(s) 49, 119, 200, 467, 503, 557, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 391
HpyF3I CTNAG 3 cut(s) 108, 130, 473
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 1 cut(s) 459
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 3 cut(s) 331, 382, 391
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 4 cut(s) 187, 343, 490, 550
MaeI CTAG 2 cut(s) 365, 568
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 3 cut(s) 136, 259, 460
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 81, 314
MluCI AATT 3 cut(s) 243, 396, 414
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 3 cut(s) 103, 320, 373
MspA1I CMGCKG 2 cut(s) 55, 388
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 61, 391
NdeI CATATG 1 cut(s) 45
NdeII GATC 1 cut(s) 355
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 3 cut(s) 136, 259, 460
PfeI GAWTC 2 cut(s) 12, 368
PflMI CCANNNNNTGG 1 cut(s) 528
PkrI GCNGC 2 cut(s) 63, 387
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PstI CTGCAG 1 cut(s) 559
PvuII CAGCTG 2 cut(s) 55, 388
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SatI GCNGC 2 cut(s) 62, 386
Sau3AI GATC 1 cut(s) 355
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 215
SfaNI GCATC 4 cut(s) 187, 343, 490, 550
SfcI CTRYAG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 38, 184
SmoI CTYRAG 2 cut(s) 38, 184
Sse9I AATT 3 cut(s) 243, 396, 414
SsiI CCGC 2 cut(s) 62, 446
SspMI CTAG 2 cut(s) 365, 568
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 1 cut(s) 462
TasI AATT 3 cut(s) 243, 396, 414
TatI WGTACW 1 cut(s) 228
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 2 cut(s) 12, 368
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 3 cut(s) 136, 259, 460
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 3 cut(s) 136, 259, 460
TspRI CASTG 1 cut(s) 469
Van91I CCANNNNNTGG 1 cut(s) 528
XapI RAATTY 1 cut(s) 414
XbaI TCTAGA 1 cut(s) 364
XmiI GTMKAC 2 cut(s) 268, 285
XspI CTAG 2 cut(s) 365, 568
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.