AT2G40390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015143
Physical Location & Seq
Forward (+)
16867293 .. 16869104
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40390.1

Sequence Viewer

Length: 1491 bp
ATGGCTTCTTGTGACACACCTGATGCGTTTGCTTGGCTTCAAACTCTTCCTCCTCTTTCTCTATGGAAAGGAAATTTAATGTCCATGTGTATTTGCTCTCCAAATTCATCACACCCATCTTTGAACTTCACTCTTACTCGTACCCCTCAATCTCCAAACTTTTTCACCTTCTCGATAGTAGCCAATTTCAAGACTCCTATTACTCTCTTTATTTCAAAAACTTTCAGAACCATTAGCACTAATTCAACTACTTTCCTCAATGAAAACGTCATATCTACTCTATTGATGGGTTTTGTCGACGTTGTTCTCAACTATAACGTCAAGAGAACCACTTGTTCAATCCAACTCCAAAACCTAGGCTCCACTTCTAACCTCAAAGACGTTTTCAACCTCGCTTTCTTCACTTTCGTGTTCCTCATCTGCATCTACGAGGCGCCAACGAGCCTGAGAACAACTTGTCTCAAAACGGTGAAAGATCAGCTGGTAACTTGTAGGTCAAGGCAGGGCTCTAAGTTGCTCATGGTGCAACTAGGCTCTAACCTTGAAGAACAATGGATGAGATCGCTGAACCTTGCAATAACCAACTGGATCATCGAGATCAAAGCGTTTCAGCATCTCAAGTCTCCTTCTCCTTTGTTTTCATATGCTTTCTCGACTCAAGGTCTATGGAAAGTTCATATGTATTGTCCTGTGGTAGCAATGGAAATGGAGAGCGTAAATAGTTCTCTAAACGACGAGAGATTGTTCTTCTCGCTAAACTATCATCAACTTGAAGGTGTAATCCAATTGAACCACAGGATTTACGTTCGTGAAAAGTGGTTTAACGTCGCAGTAAATATTGACAACGTCAGGTGCGACATAATAAGGCTTGTGAACGAGAAACTATTATCGGAACGTGGCATGGGAACAGAGGAAAAACATTTCCCCTCAAGAATATCATTGCAACTAACACCAACGAATCAATCAAACATCTTAATGGTATCCGTACAAAAATCTTCAGAAAACCCATTGACAGAATTCGAAGTAGAGAAAGGCATAGAAGCAACAATAGATCCACCAAACACATTCTTTGGACTAAAAGTCTCAGCCAACGAGACCACAACAAAAAGCATGAAGCCATGGAAGTTCGAGGAATGGGTTCATGGTTATAGCGCCAATCTCACTTGGTTTCTCCATGATCTTGACGATGGAAGAGAAGTTTCGTCCTCTAAACCATCGAAAGTCTCGATGATGAACCCTCGAGCTTGGTTCAAGAACCGGTACTCGAGCGCGTTTAGACCGTTCACGAAGCAAGGAGGAGTTGTGTTTGCAGGAGATAGTTATGGGCAAAGCGTTTTGTGGAAAGTTGATAAAACGGCTATTGGGAAAGTAATGGAGTTTGAGGTTAAAGGTTGCGTTTGGTTGACTTATTGGCCTAACAAGCATCATACTTTTTATAGTGATACTAGAAAGTTGGAATTTAAGGAGATGCTTTACCTCAATCTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

496

Amino Acids

56.86

Weight (kDa)

8.85

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40390
fragaria_vesca FvH4_7g25370
malus_domestica MD01G1159800.v1.1
prunus_persica Prupe.2G257800_v2.0.a1
pyrus_communis pycom01g17620
rosa_chinensis RchiOBHm_Chr1g0371291
rosa_laevigata RLG00000026973
rosa_multiflora Rmu_sc0016653.1_g000001
rosa_roxburghii Rroxscaffold_4G00285810
rosa_rugosa Rorug01G0362700 Rorug01G0362800
rosa_samantha Rh1AG372800 Rh1BG336300 Rh1CG349700 Rh1DG367400
rosa_wichuraiana Rw1G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 433
AccI GTMKAC 1 cut(s) 297
AccII CGCG 1 cut(s) 1271
AclWI GGATC 2 cut(s) 596, 1046
AcsI RAATTY 4 cut(s) 73, 103, 1016, 1457
AcuI CTGAAG 1 cut(s) 981
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 3 cut(s) 142, 987, 1262
AgeI ACCGGT 1 cut(s) 1257
AhdI GACNNNNNGTC 2 cut(s) 660, 1079
AleI CACNNNNGTG 1 cut(s) 407
AluBI AGCT 2 cut(s) 481, 1244
AluI AGCT 2 cut(s) 481, 1244
Alw26I GTCTC 5 cut(s) 464, 627, 1087, 1088, 1228
AlwI GGATC 2 cut(s) 596, 1046
Ama87I CYCGRG 2 cut(s) 1239, 1264
AoxI GGCC 1 cut(s) 1412
ApoI RAATTY 4 cut(s) 73, 103, 1016, 1457
AsiGI ACCGGT 1 cut(s) 1257
Asp700I GAANNNNTTC 1 cut(s) 1137
AspA2I CCTAGG 1 cut(s) 355
AspLEI GCGC 3 cut(s) 436, 1154, 1271
AsuHPI GGTGA 2 cut(s) 157, 481
AsuII TTCGAA 1 cut(s) 1020
AvaI CYCGRG 2 cut(s) 1239, 1264
AvrII CCTAGG 1 cut(s) 355
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 509
BccI CCATC 4 cut(s) 124, 280, 1181, 1222
BceAI ACGGC 1 cut(s) 1371
BciVI GTATCC 1 cut(s) 991
BcoDI GTCTC 5 cut(s) 464, 627, 1087, 1088, 1228
BfaI CTAG 3 cut(s) 356, 530, 1446
BfoI RGCGCY 2 cut(s) 437, 1155
BfuI GTATCC 1 cut(s) 991
BlnI CCTAGG 1 cut(s) 355
BmeRI GACNNNNNGTC 2 cut(s) 660, 1079
BmeT110I CYCGRG 2 cut(s) 1239, 1264
BmiI GGNNCC 2 cut(s) 361, 435
BmsI GCATC 5 cut(s) 13, 432, 622, 1432, 1458
Bpu14I TTCGAA 1 cut(s) 1020
BpuEI CTTGAG 3 cut(s) 602, 642, 913
BsaHI GRCGYC 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 1088
BsaJI CCNNGG 2 cut(s) 355, 1118
BsaWI WCCGGW 1 cut(s) 1257
BsaXI ACNNNNNCTCC 6 cut(s) 34, 64, 344, 374, 1287, 1317
Bse118I RCCGGY 1 cut(s) 1257
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 2 cut(s) 705, 938
BseDI CCNNGG 2 cut(s) 355, 1118
BseGI GGATG 1 cut(s) 561
BseMI GCAATG 2 cut(s) 705, 938
BseMII CTCAG 2 cut(s) 437, 1098
BseNI ACTGG 1 cut(s) 590
BseRI GAGGAG 2 cut(s) 42, 1311
Bsh1236I CGCG 1 cut(s) 1271
BshFI GGCC 1 cut(s) 1414
BshNI GGYRCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 1257
BsiHKCI CYCGRG 2 cut(s) 1239, 1264
BsiSI CCGG 1 cut(s) 1258
BsmAI GTCTC 5 cut(s) 464, 627, 1087, 1088, 1228
BsnI GGCC 1 cut(s) 1414
Bso31I GGTCTC 1 cut(s) 1088
BsoBI CYCGRG 2 cut(s) 1239, 1264
Bsp119I TTCGAA 1 cut(s) 1020
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 6 cut(s) 475, 560, 588, 597, 1051, 1177
Bsp19I CCATGG 1 cut(s) 1118
BspANI GGCC 1 cut(s) 1414
BspCNI CTCAG 2 cut(s) 438, 1097
BspFNI CGCG 1 cut(s) 1271
BspLI GGNNCC 2 cut(s) 361, 435
BspPI GGATC 2 cut(s) 596, 1046
BspT104I TTCGAA 1 cut(s) 1020
BspT107I GGYRCC 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 1088
BsrDI GCAATG 2 cut(s) 705, 938
BsrFI RCCGGY 1 cut(s) 1257
BsrI ACTGG 1 cut(s) 590
BssAI RCCGGY 1 cut(s) 1257
BssECI CCNNGG 2 cut(s) 355, 1118
BssMI GATC 6 cut(s) 475, 560, 588, 597, 1051, 1177
BssNI GRCGYC 1 cut(s) 434
BssT1I CCWWGG 2 cut(s) 355, 1118
Bst4CI ACNGT 2 cut(s) 469, 1281
Bst6I CTCTTC 2 cut(s) 51, 1186
BstACI GRCGYC 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 1020
BstDEI CTNAG 4 cut(s) 446, 510, 1084, 1488
BstDSI CCRYGG 1 cut(s) 1118
BstF5I GGATG 1 cut(s) 561
BstFNI CGCG 1 cut(s) 1271
BstH2I RGCGCY 2 cut(s) 437, 1155
BstHHI GCGC 3 cut(s) 436, 1154, 1271
BstKTI GATC 6 cut(s) 478, 563, 591, 600, 1054, 1180
BstMAI GTCTC 5 cut(s) 464, 627, 1087, 1088, 1228
BstMBI GATC 6 cut(s) 475, 560, 588, 597, 1051, 1177
BstMWI GCNNNNNNNGC 2 cut(s) 523, 1420
BstUI CGCG 1 cut(s) 1271
BstX2I RGATCY 1 cut(s) 1051
BstYI RGATCY 1 cut(s) 1051
BsuI GTATCC 1 cut(s) 991
BsuRI GGCC 1 cut(s) 1414
BtgI CCRYGG 1 cut(s) 1118
BtsCI GGATG 1 cut(s) 561
CfoI GCGC 3 cut(s) 436, 1154, 1271
Cfr10I RCCGGY 1 cut(s) 1257
Csp6I GTAC 3 cut(s) 141, 986, 1261
CspAI ACCGGT 1 cut(s) 1257
CviAII CATG 7 cut(s) 85, 520, 901, 1111, 1119, 1142, 1175
CviQI GTAC 3 cut(s) 141, 986, 1261
DdeI CTNAG 4 cut(s) 446, 510, 1084, 1488
DinI GGCGCC 1 cut(s) 435
DpnI GATC 6 cut(s) 477, 562, 590, 599, 1053, 1179
DpnII GATC 6 cut(s) 475, 560, 588, 597, 1051, 1177
DriI GACNNNNNGTC 2 cut(s) 660, 1079
Eam1104I CTCTTC 2 cut(s) 51, 1186
Eam1105I GACNNNNNGTC 2 cut(s) 660, 1079
EarI CTCTTC 2 cut(s) 51, 1186
Eco130I CCWWGG 2 cut(s) 355, 1118
Eco24I GRGCYC 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 1088
Eco57I CTGAAG 1 cut(s) 981
Eco88I CYCGRG 2 cut(s) 1239, 1264
EcoRI GAATTC 1 cut(s) 1016
EcoT14I CCWWGG 2 cut(s) 355, 1118
EcoT38I GRGCYC 1 cut(s) 509
EgeI GGCGCC 1 cut(s) 435
EheI GGCGCC 1 cut(s) 435
ErhI CCWWGG 2 cut(s) 355, 1118
FaeI CATG 7 cut(s) 88, 523, 904, 1114, 1122, 1145, 1178
FatI CATG 7 cut(s) 84, 519, 900, 1110, 1118, 1141, 1174
FauNDI CATATG 2 cut(s) 643, 678
FblI GTMKAC 1 cut(s) 297
FokI GGATG 1 cut(s) 568
FriOI GRGCYC 1 cut(s) 509
FspBI CTAG 3 cut(s) 356, 530, 1446
GlaI GCGC 3 cut(s) 435, 1153, 1270
HaeII RGCGCY 2 cut(s) 437, 1155
HaeIII GGCC 1 cut(s) 1414
HapII CCGG 1 cut(s) 1258
HhaI GCGC 3 cut(s) 436, 1154, 1271
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 7 cut(s) 88, 523, 904, 1114, 1122, 1145, 1178
Hin6I GCGC 3 cut(s) 434, 1152, 1269
HinP1I GCGC 3 cut(s) 434, 1152, 1269
HincII GTYRAC 2 cut(s) 298, 1404
HindII GTYRAC 2 cut(s) 298, 1404
HinfI GANTC 3 cut(s) 193, 655, 958
HpaII CCGG 1 cut(s) 1258
HphI GGTGA 2 cut(s) 157, 481
Hpy166II GTNNAC 4 cut(s) 298, 874, 1284, 1404
Hpy188I TCNGA 3 cut(s) 227, 892, 1000
Hpy8I GTNNAC 4 cut(s) 298, 874, 1284, 1404
Hpy99I CGWCG 3 cut(s) 302, 737, 830
HpyAV CCTTC 3 cut(s) 178, 636, 767
HpyCH4III ACNGT 2 cut(s) 469, 1281
HpyCH4IV ACGT 8 cut(s) 267, 300, 318, 381, 804, 825, 846, 895
HpyCH4V TGCA 5 cut(s) 423, 526, 575, 943, 1310
HpyF10VI GCNNNNNNNGC 2 cut(s) 523, 1420
HpyF3I CTNAG 4 cut(s) 446, 510, 1084, 1488
HpySE526I ACGT 8 cut(s) 267, 300, 318, 381, 804, 825, 846, 895
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 7 cut(s) 88, 523, 904, 1114, 1122, 1145, 1178
HspAI GCGC 3 cut(s) 434, 1152, 1269
KasI GGCGCC 1 cut(s) 433
Kzo9I GATC 6 cut(s) 475, 560, 588, 597, 1051, 1177
LmnI GCTCC 1 cut(s) 365
LweI GCATC 5 cut(s) 13, 432, 622, 1432, 1458
MaeI CTAG 3 cut(s) 356, 530, 1446
MaeII ACGT 8 cut(s) 267, 300, 318, 381, 804, 825, 846, 895
MaeIII GTNAC 2 cut(s) 11, 484
MalI GATC 6 cut(s) 477, 562, 590, 599, 1053, 1179
MboI GATC 6 cut(s) 475, 560, 588, 597, 1051, 1177
MboII GAAGA 7 cut(s) 38, 391, 557, 739, 987, 1203, 1475
MfeI CAATTG 1 cut(s) 785
MflI RGATCY 1 cut(s) 1051
MhlI GDGCHC 1 cut(s) 509
MluCI AATT 7 cut(s) 73, 103, 184, 241, 785, 1016, 1457
Mly113I GGCGCC 1 cut(s) 434
MlyI GAGTC 2 cut(s) 187, 649
MmeI TCCRAC 2 cut(s) 367, 1434
MroXI GAANNNNTTC 1 cut(s) 1137
MseI TTAA 5 cut(s) 77, 822, 974, 1386, 1461
MslI CAYNNNNRTG 2 cut(s) 407, 974
MspA1I CMGCKG 1 cut(s) 481
MspI CCGG 1 cut(s) 1258
MunI CAATTG 1 cut(s) 785
MvnI CGCG 1 cut(s) 1271
MwoI GCNNNNNNNGC 2 cut(s) 523, 1420
NarI GGCGCC 1 cut(s) 434
NcoI CCATGG 1 cut(s) 1118
NdeI CATATG 2 cut(s) 643, 678
NdeII GATC 6 cut(s) 475, 560, 588, 597, 1051, 1177
NlaIII CATG 7 cut(s) 88, 523, 904, 1114, 1122, 1145, 1178
NlaIV GGNNCC 2 cut(s) 361, 435
NmuCI GTSAC 1 cut(s) 11
NspV TTCGAA 1 cut(s) 1020
OliI CACNNNNGTG 1 cut(s) 407
PaeR7I CTCGAG 2 cut(s) 1239, 1264
PcsI WCGNNNNNNNCGW 2 cut(s) 852, 1223
PdmI GAANNNNTTC 1 cut(s) 1137
PfeI GAWTC 1 cut(s) 958
PflFI GACNNNGTC 1 cut(s) 845
PinAI ACCGGT 1 cut(s) 1257
PleI GAGTC 2 cut(s) 187, 649
PluTI GGCGCC 1 cut(s) 437
PpsI GAGTC 2 cut(s) 187, 649
PspN4I GGNNCC 2 cut(s) 361, 435
PspXI VCTCGAGB 2 cut(s) 1239, 1264
PsuI RGATCY 1 cut(s) 1051
PsyI GACNNNGTC 1 cut(s) 845
PvuII CAGCTG 1 cut(s) 481
RsaI GTAC 3 cut(s) 142, 987, 1262
RsaNI GTAC 3 cut(s) 141, 986, 1261
RseI CAYNNNNRTG 2 cut(s) 407, 974
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 5 cut(s) 77, 822, 974, 1386, 1461
Sau3AI GATC 6 cut(s) 475, 560, 588, 597, 1051, 1177
SchI GAGTC 2 cut(s) 187, 649
SduI GDGCHC 1 cut(s) 509
SfaNI GCATC 5 cut(s) 13, 432, 622, 1432, 1458
SfoI GGCGCC 1 cut(s) 435
Sfr274I CTCGAG 2 cut(s) 1239, 1264
SfuI TTCGAA 1 cut(s) 1020
SlaI CTCGAG 2 cut(s) 1239, 1264
SmiMI CAYNNNNRTG 2 cut(s) 407, 974
SmlI CTYRAG 5 cut(s) 617, 657, 928, 1239, 1264
SmoI CTYRAG 5 cut(s) 617, 657, 928, 1239, 1264
Sse9I AATT 7 cut(s) 73, 103, 184, 241, 785, 1016, 1457
SspDI GGCGCC 1 cut(s) 433
SspI AATATT 1 cut(s) 838
SspMI CTAG 3 cut(s) 356, 530, 1446
StyI CCWWGG 2 cut(s) 355, 1118
TaaI ACNGT 2 cut(s) 469, 1281
TaiI ACGT 8 cut(s) 270, 303, 321, 384, 807, 828, 849, 898
TasI AATT 7 cut(s) 73, 103, 184, 241, 785, 1016, 1457
TfiI GAWTC 1 cut(s) 958
Tru1I TTAA 5 cut(s) 77, 822, 974, 1386, 1461
Tru9I TTAA 5 cut(s) 77, 822, 974, 1386, 1461
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 7 cut(s) 96, 276, 630, 665, 1127, 1130, 1247
TspGWI ACGGA 1 cut(s) 973
Tth111I GACNNNGTC 1 cut(s) 845
XapI RAATTY 4 cut(s) 73, 103, 1016, 1457
XhoI CTCGAG 2 cut(s) 1239, 1264
XmaJI CCTAGG 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 1137
XspI CTAG 3 cut(s) 356, 530, 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.