No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40390 |
| fragaria_vesca | FvH4_7g25370 |
| malus_domestica | MD01G1159800.v1.1 |
| prunus_persica | Prupe.2G257800_v2.0.a1 |
| pyrus_communis | pycom01g17620 |
| rosa_chinensis | RchiOBHm_Chr1g0371291 |
| rosa_laevigata | RLG00000026973 |
| rosa_multiflora | Rmu_sc0016653.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00285810 |
| rosa_rugosa | Rorug01G0362700 Rorug01G0362800 |
| rosa_samantha | Rh1AG372800 Rh1BG336300 Rh1CG349700 Rh1DG367400 |
| rosa_wichuraiana | Rw1G032790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 439 |
| Acc36I | ACCTGC | 1 cut(s) | 439 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1245 |
| AclWI | GGATC | 2 cut(s) | 522, 535 |
| AcoI | YGGCCR | 2 cut(s) | 65, 1021 |
| AcsI | RAATTY | 6 cut(s) | 338, 712, 933, 1124, 1220, 1457 |
| AfaI | GTAC | 1 cut(s) | 1142 |
| AfeI | AGCGCT | 1 cut(s) | 1270 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 772, 1069, 1245, 1287 |
| AjnI | CCWGG | 1 cut(s) | 32 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1232, 1264, 1360, 1392 |
| AleI | CACNNNNGTG | 1 cut(s) | 614 |
| AluBI | AGCT | 6 cut(s) | 247, 592, 769, 911, 1110, 1355 |
| AluI | AGCT | 6 cut(s) | 247, 592, 769, 911, 1110, 1355 |
| Alw21I | GWGCWC | 1 cut(s) | 594 |
| Alw26I | GTCTC | 5 cut(s) | 467, 513, 874, 1088, 1436 |
| AlwI | GGATC | 2 cut(s) | 522, 535 |
| Aor51HI | AGCGCT | 1 cut(s) | 1270 |
| AoxI | GGCC | 4 cut(s) | 65, 1021, 1277, 1412 |
| ApeKI | GCWGC | 3 cut(s) | 176, 720, 1355 |
| ApoI | RAATTY | 6 cut(s) | 338, 712, 933, 1124, 1220, 1457 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 473, 505 |
| AspLEI | GCGC | 3 cut(s) | 609, 1154, 1271 |
| AspS9I | GGNCC | 3 cut(s) | 207, 555, 1278 |
| AsuHPI | GGTGA | 3 cut(s) | 121, 1325, 1465 |
| AvaII | GGWCC | 2 cut(s) | 207, 555 |
| BalI | TGGCCA | 2 cut(s) | 67, 1023 |
| BamHI | GGATCC | 1 cut(s) | 527 |
| BanII | GRGCYC | 1 cut(s) | 594 |
| BauI | CACGAG | 2 cut(s) | 614, 1025 |
| BbsI | GAAGAC | 2 cut(s) | 987, 1192 |
| Bbv12I | GWGCWC | 1 cut(s) | 594 |
| BbvI | GCAGC | 3 cut(s) | 163, 732, 1342 |
| BccI | CCATC | 7 cut(s) | 124, 153, 203, 248, 634, 1181, 1222 |
| BceAI | ACGGC | 1 cut(s) | 1159 |
| BciT130I | CCWGG | 1 cut(s) | 34 |
| BclI | TGATCA | 3 cut(s) | 333, 861, 1230 |
| BcoDI | GTCTC | 5 cut(s) | 467, 513, 874, 1088, 1436 |
| BfaI | CTAG | 1 cut(s) | 1446 |
| BfmI | CTRYAG | 2 cut(s) | 177, 1147 |
| BfoI | RGCGCY | 1 cut(s) | 1272 |
| BfuAI | ACCTGC | 1 cut(s) | 439 |
| BisI | GCNGC | 3 cut(s) | 177, 721, 1356 |
| BlsI | GCNGC | 3 cut(s) | 178, 722, 1357 |
| Bme1390I | CCNGG | 1 cut(s) | 34 |
| Bme18I | GGWCC | 2 cut(s) | 207, 555 |
| BmgT120I | GGNCC | 3 cut(s) | 207, 555, 1278 |
| BmiI | GGNNCC | 2 cut(s) | 529, 901 |
| BmrFI | CCNGG | 1 cut(s) | 34 |
| BmsI | GCATC | 2 cut(s) | 426, 819 |
| BpiI | GAAGAC | 2 cut(s) | 987, 1192 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1187, 1219, 1455, 1487 |
| BpmI | CTGGAG | 2 cut(s) | 253, 1249 |
| BpuEI | CTTGAG | 5 cut(s) | 85, 240, 449, 791, 1061 |
| BsaI | GGTCTC | 1 cut(s) | 1088 |
| BsaJI | CCNNGG | 5 cut(s) | 699, 795, 1118, 1239, 1359 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 613, 643, 891, 921, 1247, 1277, 1317, 1347 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 772, 1069, 1245, 1287 |
| Bse118I | RCCGGY | 1 cut(s) | 902 |
| Bse1I | ACTGG | 3 cut(s) | 53, 354, 1169 |
| Bse3DI | GCAATG | 2 cut(s) | 357, 705 |
| BseBI | CCWGG | 1 cut(s) | 34 |
| BseDI | CCNNGG | 5 cut(s) | 699, 795, 1118, 1239, 1359 |
| BseGI | GGATG | 4 cut(s) | 107, 455, 555, 1192 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 772, 1069, 1245, 1287 |
| BseMI | GCAATG | 2 cut(s) | 357, 705 |
| BseMII | CTCAG | 2 cut(s) | 990, 1431 |
| BseNI | ACTGG | 3 cut(s) | 53, 354, 1169 |
| BseRI | GAGGAG | 2 cut(s) | 392, 912 |
| BseXI | GCAGC | 3 cut(s) | 163, 732, 1342 |
| BseYI | CCCAGC | 1 cut(s) | 603 |
| Bsh1285I | CGRYCG | 1 cut(s) | 446 |
| BshFI | GGCC | 4 cut(s) | 67, 1023, 1279, 1414 |
| BsiEI | CGRYCG | 1 cut(s) | 446 |
| BsiHKAI | GWGCWC | 1 cut(s) | 594 |
| BsiSI | CCGG | 1 cut(s) | 903 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 772, 1069, 1245, 1287 |
| BsmAI | GTCTC | 5 cut(s) | 467, 513, 874, 1088, 1436 |
| BsnI | GGCC | 4 cut(s) | 67, 1023, 1279, 1414 |
| Bso31I | GGTCTC | 1 cut(s) | 1088 |
| Bsp1286I | GDGCHC | 1 cut(s) | 594 |
| Bsp143I | GATC | 6 cut(s) | 333, 436, 443, 527, 861, 1230 |
| Bsp19I | CCATGG | 3 cut(s) | 699, 1118, 1359 |
| BspANI | GGCC | 4 cut(s) | 67, 1023, 1279, 1414 |
| BspCNI | CTCAG | 2 cut(s) | 991, 1432 |
| BspHI | TCATGA | 2 cut(s) | 513, 1174 |
| BspLI | GGNNCC | 2 cut(s) | 529, 901 |
| BspMAI | CTGCAG | 1 cut(s) | 181 |
| BspMI | ACCTGC | 1 cut(s) | 439 |
| BspPI | GGATC | 2 cut(s) | 522, 535 |
| BspTNI | GGTCTC | 1 cut(s) | 1088 |
| BsrDI | GCAATG | 2 cut(s) | 357, 705 |
| BsrFI | RCCGGY | 1 cut(s) | 902 |
| BsrI | ACTGG | 3 cut(s) | 53, 354, 1169 |
| BssAI | RCCGGY | 1 cut(s) | 902 |
| BssECI | CCNNGG | 5 cut(s) | 699, 795, 1118, 1239, 1359 |
| BssMI | GATC | 6 cut(s) | 333, 436, 443, 527, 861, 1230 |
| BssSI | CACGAG | 2 cut(s) | 614, 1025 |
| BssT1I | CCWWGG | 5 cut(s) | 699, 795, 1118, 1239, 1359 |
| Bst2BI | CACGAG | 2 cut(s) | 614, 1025 |
| Bst2UI | CCWGG | 1 cut(s) | 34 |
| Bst4CI | ACNGT | 2 cut(s) | 461, 958 |
| Bst6I | CTCTTC | 4 cut(s) | 410, 534, 1186, 1210 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 176 |
| BstC8I | GCNNGC | 1 cut(s) | 779 |
| BstDEI | CTNAG | 3 cut(s) | 999, 1209, 1440 |
| BstDSI | CCRYGG | 3 cut(s) | 699, 1118, 1359 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1285 |
| BstF5I | GGATG | 4 cut(s) | 107, 455, 555, 1192 |
| BstH2I | RGCGCY | 1 cut(s) | 1272 |
| BstHHI | GCGC | 3 cut(s) | 609, 1154, 1271 |
| BstKTI | GATC | 6 cut(s) | 336, 439, 446, 530, 864, 1233 |
| BstMAI | GTCTC | 5 cut(s) | 467, 513, 874, 1088, 1436 |
| BstMBI | GATC | 6 cut(s) | 333, 436, 443, 527, 861, 1230 |
| BstMCI | CGRYCG | 1 cut(s) | 446 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 176, 908, 1041 |
| BstNI | CCWGG | 1 cut(s) | 34 |
| BstSCI | CCNGG | 1 cut(s) | 32 |
| BstSFI | CTRYAG | 2 cut(s) | 177, 1147 |
| BstV1I | GCAGC | 3 cut(s) | 163, 732, 1342 |
| BstV2I | GAAGAC | 2 cut(s) | 987, 1192 |
| BstX2I | RGATCY | 1 cut(s) | 527 |
| BstYI | RGATCY | 1 cut(s) | 527 |
| BsuRI | GGCC | 4 cut(s) | 67, 1023, 1279, 1414 |
| BtgI | CCRYGG | 3 cut(s) | 699, 1118, 1359 |
| BtsCI | GGATG | 4 cut(s) | 107, 455, 555, 1192 |
| BtsIMutI | CAGTG | 1 cut(s) | 990 |
| BveI | ACCTGC | 1 cut(s) | 439 |
| Cac8I | GCNNGC | 1 cut(s) | 779 |
| CciI | TCATGA | 2 cut(s) | 513, 1174 |
| CfoI | GCGC | 3 cut(s) | 609, 1154, 1271 |
| Cfr10I | RCCGGY | 1 cut(s) | 902 |
| Cfr13I | GGNCC | 3 cut(s) | 207, 555, 1278 |
| Csp6I | GTAC | 1 cut(s) | 1141 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 797, 832 |
| CviAII | CATG | 7 cut(s) | 79, 514, 700, 1119, 1175, 1245, 1360 |
| CviQI | GTAC | 1 cut(s) | 1141 |
| DdeI | CTNAG | 3 cut(s) | 999, 1209, 1440 |
| DpnI | GATC | 6 cut(s) | 335, 438, 445, 529, 863, 1232 |
| DpnII | GATC | 6 cut(s) | 333, 436, 443, 527, 861, 1230 |
| EaeI | YGGCCR | 2 cut(s) | 65, 1021 |
| Eam1104I | CTCTTC | 4 cut(s) | 410, 534, 1186, 1210 |
| EarI | CTCTTC | 4 cut(s) | 410, 534, 1186, 1210 |
| Ecl136II | GAGCTC | 1 cut(s) | 592 |
| Eco130I | CCWWGG | 5 cut(s) | 699, 795, 1118, 1239, 1359 |
| Eco24I | GRGCYC | 1 cut(s) | 594 |
| Eco31I | GGTCTC | 1 cut(s) | 1088 |
| Eco47I | GGWCC | 2 cut(s) | 207, 555 |
| Eco47III | AGCGCT | 1 cut(s) | 1270 |
| Eco53kI | GAGCTC | 1 cut(s) | 592 |
| EcoICRI | GAGCTC | 1 cut(s) | 592 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1285 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1278 |
| EcoRII | CCWGG | 1 cut(s) | 32 |
| EcoT14I | CCWWGG | 5 cut(s) | 699, 795, 1118, 1239, 1359 |
| EcoT38I | GRGCYC | 1 cut(s) | 594 |
| ErhI | CCWWGG | 5 cut(s) | 699, 795, 1118, 1239, 1359 |
| FaeI | CATG | 7 cut(s) | 82, 517, 703, 1122, 1178, 1248, 1363 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 285, 317, 458, 490 |
| FatI | CATG | 7 cut(s) | 78, 513, 699, 1118, 1174, 1244, 1359 |
| FauNDI | CATATG | 1 cut(s) | 92 |
| FbaI | TGATCA | 3 cut(s) | 333, 861, 1230 |
| Fnu4HI | GCNGC | 3 cut(s) | 177, 721, 1356 |
| FokI | GGATG | 4 cut(s) | 94, 462, 562, 1199 |
| FriOI | GRGCYC | 1 cut(s) | 594 |
| Fsp4HI | GCNGC | 3 cut(s) | 177, 721, 1356 |
| FspBI | CTAG | 1 cut(s) | 1446 |
| GlaI | GCGC | 3 cut(s) | 608, 1153, 1270 |
| GluI | GCNGC | 3 cut(s) | 177, 721, 1356 |
| GsaI | CCCAGC | 1 cut(s) | 607 |
| GsuI | CTGGAG | 2 cut(s) | 253, 1249 |
| HaeII | RGCGCY | 1 cut(s) | 1272 |
| HaeIII | GGCC | 4 cut(s) | 67, 1023, 1279, 1414 |
| HapII | CCGG | 1 cut(s) | 903 |
| HhaI | GCGC | 3 cut(s) | 609, 1154, 1271 |
| Hin1II | CATG | 7 cut(s) | 82, 517, 703, 1122, 1178, 1248, 1363 |
| Hin6I | GCGC | 3 cut(s) | 607, 1152, 1269 |
| HinP1I | GCGC | 3 cut(s) | 607, 1152, 1269 |
| HincII | GTYRAC | 1 cut(s) | 1404 |
| HindII | GTYRAC | 1 cut(s) | 1404 |
| HinfI | GANTC | 3 cut(s) | 37, 353, 1133 |
| HpaII | CCGG | 1 cut(s) | 903 |
| HphI | GGTGA | 3 cut(s) | 121, 1325, 1465 |
| Hpy166II | GTNNAC | 3 cut(s) | 1141, 1348, 1404 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 443, 1000 |
| Hpy8I | GTNNAC | 3 cut(s) | 1141, 1348, 1404 |
| HpyAV | CCTTC | 6 cut(s) | 56, 735, 936, 1034, 1291, 1336 |
| HpyCH4III | ACNGT | 2 cut(s) | 461, 958 |
| HpyCH4V | TGCA | 7 cut(s) | 170, 179, 417, 569, 710, 745, 1226 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 176, 908, 1041 |
| HpyF3I | CTNAG | 3 cut(s) | 999, 1209, 1440 |
| Hsp92II | CATG | 7 cut(s) | 82, 517, 703, 1122, 1178, 1248, 1363 |
| HspAI | GCGC | 3 cut(s) | 607, 1152, 1269 |
| Ksp22I | TGATCA | 3 cut(s) | 333, 861, 1230 |
| Kzo9I | GATC | 6 cut(s) | 333, 436, 443, 527, 861, 1230 |
| LmnI | GCTCC | 2 cut(s) | 597, 899 |
| Lsp1109I | GCAGC | 3 cut(s) | 163, 732, 1342 |
| LweI | GCATC | 2 cut(s) | 426, 819 |
| MaeI | CTAG | 1 cut(s) | 1446 |
| MaeIII | GTNAC | 2 cut(s) | 55, 394 |
| MalI | GATC | 6 cut(s) | 335, 438, 445, 529, 863, 1232 |
| MboI | GATC | 6 cut(s) | 333, 436, 443, 527, 861, 1230 |
| MboII | GAAGA | 9 cut(s) | 305, 397, 551, 987, 1163, 1192, 1197, 1203, 1377 |
| MfeI | CAATTG | 4 cut(s) | 171, 577, 677, 1482 |
| MflI | RGATCY | 1 cut(s) | 527 |
| MhlI | GDGCHC | 1 cut(s) | 594 |
| MlsI | TGGCCA | 2 cut(s) | 67, 1023 |
| MluNI | TGGCCA | 2 cut(s) | 67, 1023 |
| MmeI | TCCRAC | 1 cut(s) | 977 |
| Mox20I | TGGCCA | 2 cut(s) | 67, 1023 |
| MscI | TGGCCA | 2 cut(s) | 67, 1023 |
| MseI | TTAA | 4 cut(s) | 278, 381, 456, 1489 |
| MslI | CAYNNNNRTG | 5 cut(s) | 518, 614, 698, 1103, 1179 |
| Msp20I | TGGCCA | 2 cut(s) | 67, 1023 |
| MspI | CCGG | 1 cut(s) | 903 |
| MspR9I | CCNGG | 1 cut(s) | 34 |
| MunI | CAATTG | 4 cut(s) | 171, 577, 677, 1482 |
| MvaI | CCWGG | 1 cut(s) | 34 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 176, 908, 1041 |
| NcoI | CCATGG | 3 cut(s) | 699, 1118, 1359 |
| NdeI | CATATG | 1 cut(s) | 92 |
| NdeII | GATC | 6 cut(s) | 333, 436, 443, 527, 861, 1230 |
| NlaIII | CATG | 7 cut(s) | 82, 517, 703, 1122, 1178, 1248, 1363 |
| NlaIV | GGNNCC | 2 cut(s) | 529, 901 |
| NmuCI | GTSAC | 2 cut(s) | 55, 394 |
| OliI | CACNNNNGTG | 1 cut(s) | 614 |
| PagI | TCATGA | 2 cut(s) | 513, 1174 |
| PaqCI | CACCTGC | 1 cut(s) | 439 |
| PfeI | GAWTC | 3 cut(s) | 37, 353, 1133 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1245 |
| PfoI | TCCNGGA | 1 cut(s) | 32 |
| PkrI | GCNGC | 3 cut(s) | 178, 722, 1357 |
| Ple19I | CGATCG | 1 cut(s) | 446 |
| Psp124BI | GAGCTC | 1 cut(s) | 594 |
| Psp6I | CCWGG | 1 cut(s) | 32 |
| PspFI | CCCAGC | 1 cut(s) | 603 |
| PspGI | CCWGG | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 2 cut(s) | 529, 901 |
| PspPI | GGNCC | 3 cut(s) | 207, 555, 1278 |
| PstI | CTGCAG | 1 cut(s) | 181 |
| PsuI | RGATCY | 1 cut(s) | 527 |
| PvuI | CGATCG | 1 cut(s) | 446 |
| RsaI | GTAC | 1 cut(s) | 1142 |
| RsaNI | GTAC | 1 cut(s) | 1141 |
| RseI | CAYNNNNRTG | 5 cut(s) | 518, 614, 698, 1103, 1179 |
| SacI | GAGCTC | 1 cut(s) | 594 |
| SaqAI | TTAA | 4 cut(s) | 278, 381, 456, 1489 |
| SatI | GCNGC | 3 cut(s) | 177, 721, 1356 |
| Sau3AI | GATC | 6 cut(s) | 333, 436, 443, 527, 861, 1230 |
| Sau96I | GGNCC | 3 cut(s) | 207, 555, 1278 |
| ScrFI | CCNGG | 1 cut(s) | 34 |
| SduI | GDGCHC | 1 cut(s) | 594 |
| SfaNI | GCATC | 2 cut(s) | 426, 819 |
| SfcI | CTRYAG | 2 cut(s) | 177, 1147 |
| SinI | GGWCC | 2 cut(s) | 207, 555 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 518, 614, 698, 1103, 1179 |
| SmlI | CTYRAG | 5 cut(s) | 100, 255, 464, 770, 1076 |
| SmoI | CTYRAG | 5 cut(s) | 100, 255, 464, 770, 1076 |
| SspMI | CTAG | 1 cut(s) | 1446 |
| SstI | GAGCTC | 1 cut(s) | 594 |
| StyD4I | CCNGG | 1 cut(s) | 32 |
| StyI | CCWWGG | 5 cut(s) | 699, 795, 1118, 1239, 1359 |
| TaaI | ACNGT | 2 cut(s) | 461, 958 |
| TaqI | TCGA | 1 cut(s) | 1128 |
| TfiI | GAWTC | 3 cut(s) | 37, 353, 1133 |
| Tru1I | TTAA | 4 cut(s) | 278, 381, 456, 1489 |
| Tru9I | TTAA | 4 cut(s) | 278, 381, 456, 1489 |
| TscAI | CASTG | 1 cut(s) | 990 |
| TseFI | GTSAC | 2 cut(s) | 55, 394 |
| TseI | GCWGC | 3 cut(s) | 176, 720, 1355 |
| Tsp45I | GTSAC | 2 cut(s) | 55, 394 |
| TspDTI | ATGAA | 8 cut(s) | 96, 277, 438, 530, 902, 927, 1163, 1332 |
| TspRI | CASTG | 1 cut(s) | 990 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1245 |
| VpaK11BI | GGWCC | 2 cut(s) | 207, 555 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1285 |
| XapI | RAATTY | 6 cut(s) | 338, 712, 933, 1124, 1220, 1457 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 60 |
| XspI | CTAG | 1 cut(s) | 1446 |