Rmu_sc0016653.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016653.1
OG0015143
Physical Location & Seq
Forward (+)
1 .. 3301
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016653.1_g000001.1.cds

Sequence Viewer

Length: 1310 bp
atttcaatctccctatcgcactttggacctcaaaacacttcaaattcagccccaataacatcaagccaataaatcaagaaaccatttccagtctcctagtcaatgtcattgaagatgttcttcactatggctcaaacaagaataacttcttgatcaagtttctcaagctagactccattgccaacttggaagaagtcttcaacctctcatttctcgctcttctgtgcctcgtttgcatctacgaagcccctgcaggccttcgctccggatgtctcaacattctcaagaattacttggcagattgctggtcaagacaggcttcgaagtcgctgatgaagcttttaggatcaaatttggaagaggaatggatgcggtccatgaaccttgcgattaccaattggattgtggagctccaagcagaacagagaacccttaaaacaccatcaccacttttctcttacgcaatttcgacgtttgggttgttgaaagtgcagttgtattgtcctgtcatagccatggacattgaaaaatctagcagcccttcttgtggtgatgagagactgcagttctctctgaattaccaccagcttgagggtgttcttcagttcaattacaaagtcatagtcaaagagaggtggattgatgtgatgctaaacgttgacaacataaggtgtgatattgttaggcttgtgaatgagactctaatgaatgaacaaggcgccgggacaggtgaaaagcatttcccatcaagaatttcattacaaattactccaactcgacaaaccaatgtggtgagtgtttcagtgagcaagtcttccgagaaccctacaagagagattggcaaagaaaagggcatagagggttcatttgaacccccaaacccttacttggcgttcaaggtatcggctggggagaccataacaatgagcttgaagccatggaagttcgaggaatctgtgtacggatatagtgcaaacttgaattggtttctccatgatggtgtggatggtagggaggtcttctcttccaagccatcaaagtttcagctgattaaccccaaggcttggttcaaagacaggtactctagtgcttataggcctttcactaggcaaggaggagtcatttttgctggtgatgagtatggagagggtgtgatgtggaaggtagacaaagctgcccttggaaagactatggaatgggaaattaaagggtggatttggttaacttattggcctaacaaacataaaacattttatactgagaccaggaggctggaatttagagaaatcctcaaacttacaattgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

435

Amino Acids

49.84

Weight (kDa)

8.5

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40390
fragaria_vesca FvH4_7g25370
malus_domestica MD01G1159800.v1.1
prunus_persica Prupe.2G257800_v2.0.a1
pyrus_communis pycom01g17620
rosa_chinensis RchiOBHm_Chr1g0371291
rosa_laevigata RLG00000026973
rosa_multiflora Rmu_sc0016653.1_g000001
rosa_roxburghii Rroxscaffold_4G00285810
rosa_rugosa Rorug01G0362700 Rorug01G0362800
rosa_samantha Rh1AG372800 Rh1BG336300 Rh1CG349700 Rh1DG367400
rosa_wichuraiana Rw1G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 718
AccB7I CCANNNNNTGG 1 cut(s) 1064
AccI GTMKAC 1 cut(s) 1166
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 1 cut(s) 372
AclI AACGTT 1 cut(s) 656
AclWI GGATC 1 cut(s) 354
AcsI RAATTY 4 cut(s) 43, 351, 752, 1276
AcuI CTGAAG 1 cut(s) 586
AcyI GRCGYC 1 cut(s) 719
AfaI GTAC 2 cut(s) 961, 1081
AfiI CCNNNNNNNGG 4 cut(s) 547, 591, 888, 1064
AjnI CCWGG 1 cut(s) 1264
AjuI GAANNNNNNNTTGG 2 cut(s) 1051, 1083
AluBI AGCT 7 cut(s) 168, 339, 411, 588, 929, 1047, 1174
AluI AGCT 7 cut(s) 168, 339, 411, 588, 929, 1047, 1174
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 6 cut(s) 97, 277, 552, 691, 907, 1255
AlwI GGATC 1 cut(s) 354
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 3 cut(s) 255, 1096, 1231
ApeKI GCWGC 2 cut(s) 536, 1174
ApoI RAATTY 4 cut(s) 43, 351, 752, 1276
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
Asp700I GAANNNNTTC 2 cut(s) 116, 145
AspLEI GCGC 1 cut(s) 721
AspS9I GGNCC 2 cut(s) 26, 374
AsuC2I CCSGG 1 cut(s) 723
AsuHPI GGTGA 5 cut(s) 437, 562, 742, 804, 1144
AsuII TTCGAA 1 cut(s) 322
AvaII GGWCC 2 cut(s) 26, 374
BaeI ACNNNNGTAYC 2 cut(s) 1071, 1104
BanI GGYRCC 1 cut(s) 718
BanII GRGCYC 1 cut(s) 413
BbsI GAAGAC 3 cut(s) 189, 806, 1011
Bbv12I GWGCWC 1 cut(s) 413
BbvI GCAGC 2 cut(s) 548, 1161
BccI CCATC 5 cut(s) 450, 753, 991, 1000, 1041
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciT130I CCWGG 1 cut(s) 1266
BclI TGATCA 1 cut(s) 152
BcnI CCSGG 1 cut(s) 723
BcoDI GTCTC 6 cut(s) 97, 277, 552, 691, 907, 1255
BfaI CTAG 5 cut(s) 97, 169, 533, 1085, 1106
BfmI CTRYAG 2 cut(s) 251, 562
BfoI RGCGCY 1 cut(s) 722
BisI GCNGC 2 cut(s) 537, 1175
BlsI GCNGC 2 cut(s) 538, 1176
Bme1390I CCNGG 2 cut(s) 723, 1266
Bme18I GGWCC 2 cut(s) 26, 374
BmgT120I GGNCC 2 cut(s) 26, 374
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 2 cut(s) 723, 1266
BmsI GCATC 3 cut(s) 245, 359, 638
BpiI GAAGAC 3 cut(s) 189, 806, 1011
BplI GAGNNNNNCTC 4 cut(s) 1006, 1038, 1274, 1306
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 3 cut(s) 148, 268, 610
BpuMI CCSGG 1 cut(s) 723
BsaHI GRCGYC 1 cut(s) 719
BsaI GGTCTC 2 cut(s) 907, 1255
BsaJI CCNNGG 4 cut(s) 515, 937, 1058, 1179
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 1136, 1166
Bsc4I CCNNNNNNNGG 4 cut(s) 547, 591, 888, 1064
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 265
BseBI CCWGG 1 cut(s) 1266
BseDI CCNNGG 4 cut(s) 515, 937, 1058, 1179
BseGI GGATG 3 cut(s) 274, 374, 1011
BseLI CCNNNNNNNGG 4 cut(s) 547, 591, 888, 1064
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 1250
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 1130
BseXI GCAGC 2 cut(s) 548, 1161
BseYI CCCAGC 1 cut(s) 907
BsgI GTGCAG 1 cut(s) 511
BshFI GGCC 3 cut(s) 257, 1098, 1233
BshNI GGYRCC 1 cut(s) 718
BsiHKAI GWGCWC 1 cut(s) 413
BsiSI CCGG 2 cut(s) 266, 722
BslFI GGGAC 1 cut(s) 738
BslI CCNNNNNNNGG 4 cut(s) 547, 591, 888, 1064
BsmAI GTCTC 6 cut(s) 97, 277, 552, 691, 907, 1255
BsmFI GGGAC 1 cut(s) 738
BsnI GGCC 3 cut(s) 257, 1098, 1233
Bso31I GGTCTC 2 cut(s) 907, 1255
Bsp119I TTCGAA 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 413
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 2 cut(s) 152, 346
Bsp19I CCATGG 2 cut(s) 515, 937
BspACI CCGC 1 cut(s) 372
BspANI GGCC 3 cut(s) 257, 1098, 1233
BspCNI CTCAG 1 cut(s) 1251
BspEI TCCGGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 720
BspMAI CTGCAG 2 cut(s) 255, 566
BspPI GGATC 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 224
BspT104I TTCGAA 1 cut(s) 322
BspT107I GGYRCC 1 cut(s) 718
BspTNI GGTCTC 2 cut(s) 907, 1255
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 4 cut(s) 515, 937, 1058, 1179
BssMI GATC 2 cut(s) 152, 346
BssNI GRCGYC 1 cut(s) 719
BssT1I CCWWGG 4 cut(s) 515, 937, 1058, 1179
Bst2UI CCWGG 1 cut(s) 1266
Bst6I CTCTTC 3 cut(s) 224, 353, 1029
BstACI GRCGYC 1 cut(s) 719
BstBI TTCGAA 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 1259
BstDSI CCRYGG 2 cut(s) 515, 937
BstF5I GGATG 3 cut(s) 274, 374, 1011
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 1 cut(s) 721
BstKTI GATC 2 cut(s) 155, 349
BstMAI GTCTC 6 cut(s) 97, 277, 552, 691, 907, 1255
BstMBI GATC 2 cut(s) 152, 346
BstMWI GCNNNNNNNGC 2 cut(s) 233, 336
BstNI CCWGG 1 cut(s) 1266
BstSCI CCNGG 2 cut(s) 721, 1264
BstSFI CTRYAG 2 cut(s) 251, 562
BstV1I GCAGC 2 cut(s) 548, 1161
BstV2I GAAGAC 3 cut(s) 189, 806, 1011
BstXI CCANNNNNNTGG 1 cut(s) 1272
BsuRI GGCC 3 cut(s) 257, 1098, 1233
BtgI CCRYGG 2 cut(s) 515, 937
BtsCI GGATG 3 cut(s) 274, 374, 1011
BtsIMutI CAGTG 1 cut(s) 809
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 721
Cfr13I GGNCC 2 cut(s) 26, 374
Csp6I GTAC 2 cut(s) 960, 1080
CviAII CATG 4 cut(s) 378, 516, 938, 994
CviQI GTAC 2 cut(s) 960, 1080
DdeI CTNAG 1 cut(s) 1259
DinI GGCGCC 1 cut(s) 720
DpnI GATC 2 cut(s) 154, 348
DpnII GATC 2 cut(s) 152, 346
Eam1104I CTCTTC 3 cut(s) 224, 353, 1029
EarI CTCTTC 3 cut(s) 224, 353, 1029
Ecl136II GAGCTC 1 cut(s) 411
Eco130I CCWWGG 4 cut(s) 515, 937, 1058, 1179
Eco147I AGGCCT 2 cut(s) 257, 1098
Eco24I GRGCYC 1 cut(s) 413
Eco31I GGTCTC 2 cut(s) 907, 1255
Eco47I GGWCC 2 cut(s) 26, 374
Eco53kI GAGCTC 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 1264
EcoT14I CCWWGG 4 cut(s) 515, 937, 1058, 1179
EcoT38I GRGCYC 1 cut(s) 413
EgeI GGCGCC 1 cut(s) 720
EheI GGCGCC 1 cut(s) 720
ErhI CCWWGG 4 cut(s) 515, 937, 1058, 1179
FaeI CATG 4 cut(s) 381, 519, 941, 997
FaqI GGGAC 1 cut(s) 738
FatI CATG 4 cut(s) 377, 515, 937, 993
FbaI TGATCA 1 cut(s) 152
FblI GTMKAC 1 cut(s) 1166
Fnu4HI GCNGC 2 cut(s) 537, 1175
FokI GGATG 3 cut(s) 281, 381, 1018
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 2 cut(s) 537, 1175
FspBI CTAG 5 cut(s) 97, 169, 533, 1085, 1106
GlaI GCGC 1 cut(s) 720
GluI GCNGC 2 cut(s) 537, 1175
GsaI CCCAGC 1 cut(s) 911
HaeII RGCGCY 1 cut(s) 722
HaeIII GGCC 3 cut(s) 257, 1098, 1233
HapII CCGG 2 cut(s) 266, 722
HhaI GCGC 1 cut(s) 721
Hin1I GRCGYC 1 cut(s) 719
Hin1II CATG 4 cut(s) 381, 519, 941, 997
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HincII GTYRAC 2 cut(s) 660, 1223
HindII GTYRAC 2 cut(s) 660, 1223
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 4 cut(s) 172, 699, 952, 1118
HpaI GTTAAC 1 cut(s) 1223
HpaII CCGG 2 cut(s) 266, 722
HphI GGTGA 5 cut(s) 437, 562, 742, 804, 1144
Hpy166II GTNNAC 4 cut(s) 660, 960, 1167, 1223
Hpy188I TCNGA 2 cut(s) 575, 819
Hpy188III TCNNGA 6 cut(s) 76, 150, 266, 285, 311, 749
Hpy8I GTNNAC 4 cut(s) 660, 960, 1167, 1223
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 3 cut(s) 268, 551, 1155
HpyCH4IV ACGT 2 cut(s) 472, 656
HpyCH4V TGCA 5 cut(s) 236, 253, 492, 564, 973
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 336
HpyF3I CTNAG 1 cut(s) 1259
HpySE526I ACGT 2 cut(s) 472, 656
Hsp92I GRCGYC 1 cut(s) 719
Hsp92II CATG 4 cut(s) 381, 519, 941, 997
HspAI GCGC 1 cut(s) 719
KasI GGCGCC 1 cut(s) 718
Kpn2I TCCGGA 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 152
KspAI GTTAAC 1 cut(s) 1223
Kzo9I GATC 2 cut(s) 152, 346
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 3 cut(s) 268, 408, 416
Lsp1109I GCAGC 2 cut(s) 548, 1161
LweI GCATC 3 cut(s) 245, 359, 638
MaeI CTAG 5 cut(s) 97, 169, 533, 1085, 1106
MaeII ACGT 2 cut(s) 472, 656
MalI GATC 2 cut(s) 154, 348
MboI GATC 2 cut(s) 152, 346
MfeI CAATTG 2 cut(s) 396, 1301
MhlI GDGCHC 1 cut(s) 413
Mly113I GGCGCC 1 cut(s) 719
MlyI GAGTC 3 cut(s) 166, 693, 1127
MmeI TCCRAC 1 cut(s) 796
MroI TCCGGA 1 cut(s) 265
MroXI GAANNNNTTC 2 cut(s) 116, 145
MseI TTAA 5 cut(s) 434, 1052, 1205, 1222, 1308
MslI CAYNNNNRTG 3 cut(s) 514, 922, 998
MspA1I CMGCKG 1 cut(s) 1047
MspI CCGG 2 cut(s) 266, 722
MspR9I CCNGG 2 cut(s) 723, 1266
MunI CAATTG 2 cut(s) 396, 1301
MvaI CCWGG 1 cut(s) 1266
MwoI GCNNNNNNNGC 2 cut(s) 233, 336
NarI GGCGCC 1 cut(s) 719
NciI CCSGG 1 cut(s) 723
NcoI CCATGG 2 cut(s) 515, 937
NdeII GATC 2 cut(s) 152, 346
NlaIII CATG 4 cut(s) 381, 519, 941, 997
NlaIV GGNNCC 1 cut(s) 720
NspV TTCGAA 1 cut(s) 322
PceI AGGCCT 2 cut(s) 257, 1098
PciSI GCTCTTC 1 cut(s) 224
PdmI GAANNNNTTC 2 cut(s) 116, 145
PfeI GAWTC 1 cut(s) 952
PflMI CCANNNNNTGG 1 cut(s) 1064
PkrI GCNGC 2 cut(s) 538, 1176
PleI GAGTC 3 cut(s) 166, 693, 1126
PluTI GGCGCC 1 cut(s) 722
PpsI GAGTC 3 cut(s) 166, 693, 1126
Psp124BI GAGCTC 1 cut(s) 413
Psp1406I AACGTT 1 cut(s) 656
Psp6I CCWGG 1 cut(s) 1264
PspFI CCCAGC 1 cut(s) 907
PspGI CCWGG 1 cut(s) 1264
PspN4I GGNNCC 1 cut(s) 720
PspPI GGNCC 2 cut(s) 26, 374
PstI CTGCAG 2 cut(s) 255, 566
PvuII CAGCTG 1 cut(s) 1047
RsaI GTAC 2 cut(s) 961, 1081
RsaNI GTAC 2 cut(s) 960, 1080
RseI CAYNNNNRTG 3 cut(s) 514, 922, 998
SacI GAGCTC 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 5 cut(s) 434, 1052, 1205, 1222, 1308
SatI GCNGC 2 cut(s) 537, 1175
Sau3AI GATC 2 cut(s) 152, 346
Sau96I GGNCC 2 cut(s) 26, 374
SbfI CCTGCAGG 1 cut(s) 255
SchI GAGTC 3 cut(s) 166, 693, 1127
ScrFI CCNGG 2 cut(s) 723, 1266
SdaI CCTGCAGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 3 cut(s) 245, 359, 638
SfcI CTRYAG 2 cut(s) 251, 562
SfoI GGCGCC 1 cut(s) 720
SfuI TTCGAA 1 cut(s) 322
SinI GGWCC 2 cut(s) 26, 374
SmiMI CAYNNNNRTG 3 cut(s) 514, 922, 998
SmlI CTYRAG 3 cut(s) 163, 283, 589
SmoI CTYRAG 3 cut(s) 163, 283, 589
Sse8387I CCTGCAGG 1 cut(s) 255
SseBI AGGCCT 2 cut(s) 257, 1098
SsiI CCGC 1 cut(s) 372
SspDI GGCGCC 1 cut(s) 718
SspMI CTAG 5 cut(s) 97, 169, 533, 1085, 1106
SstI GAGCTC 1 cut(s) 413
StuI AGGCCT 2 cut(s) 257, 1098
StyD4I CCNGG 2 cut(s) 721, 1264
StyI CCWWGG 4 cut(s) 515, 937, 1058, 1179
TaiI ACGT 2 cut(s) 475, 659
TaqI TCGA 4 cut(s) 322, 469, 777, 947
TfiI GAWTC 1 cut(s) 952
Tru1I TTAA 5 cut(s) 434, 1052, 1205, 1222, 1308
Tru9I TTAA 5 cut(s) 434, 1052, 1205, 1222, 1308
TscAI CASTG 1 cut(s) 809
TseI GCWGC 2 cut(s) 536, 1174
TspDTI ATGAA 6 cut(s) 349, 394, 721, 725, 746, 854
TspGWI ACGGA 1 cut(s) 977
TspRI CASTG 1 cut(s) 809
Van91I CCANNNNNTGG 1 cut(s) 1064
VpaK11BI GGWCC 2 cut(s) 26, 374
XapI RAATTY 4 cut(s) 43, 351, 752, 1276
XcmI CCANNNNNNNNNTGG 2 cut(s) 183, 402
XmiI GTMKAC 1 cut(s) 1166
XmnI GAANNNNTTC 2 cut(s) 116, 145
XspI CTAG 5 cut(s) 97, 169, 533, 1085, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.