Rorug01G0362800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015143
Physical Location & Seq
Reverse (-)
47796941 .. 47798610
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0362800.1

Sequence Viewer

Length: 717 bp
ATGAGCCAAAGCCCCTCACGATCCAGGAGGTTCCGCAGCAGTGAACGTGCATCTTACCGTGATGCCCCGTATCCTAGGGAGCGCCGTGTTAATAGGAATGATTTTCTTTGCAACAAATGTAAACGACCAGGGCATTTTGCCAGAGATTGCCCAAATATGACTGTCTGCAACAACTGTGGGCTTCCTGGCCACATTGCTGCTGAATGCAACTCGACCGCTACTTGTTGGAACTGCAAGGAGCCTGGACATCTTGCAAGCCAATGCCCCAACGATCCAGTCTGCCATATGTGCGGCAAGATGGGTCACCTTGCTCGTGATTGCTCAAGCCCATCTCTTCCATCCCATGATGCGAGGCTATGCAACAACTGCTACAAGCCAGGTCACATTGCAGTCACTTGCACCAACGAGAAGGCATGCAACAACTGCCGCAAGCCAGGCCACCTCGCCCGCGACTGCCCCAACGAACCCATCTGCAACATCTGCAATATATCAGGCCACGTGGCCCGTCACTGCCCCAAGTCAGGATCAAACATGGGAGGAGGAGGAGGAGTAGGAGGCCCTTTCCGCGACATTATCTGCCGTAACTGCAGCCAGCCAGGGCACGTCAGCCGCGAGTGTGTGTCCATTGTTATCTGCAACAACTGCGGCGGAAGGGGTCACCAAGCTTATGAGTGCCCTTCCGCCTTGATGTATGATCGTGGCGTCCGTAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.07

Weight (kDa)

8.96

Isoelectric Point (pI)

72.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 37 - 52 2.9e-06 Zinc knuckle
zf-CCHC PF00098 74 - 90 2.1e-06 Zinc knuckle
zf-CCHC PF00098 138 - 154 2.2e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40390
fragaria_vesca FvH4_7g25370
malus_domestica MD01G1159800.v1.1
prunus_persica Prupe.2G257800_v2.0.a1
pyrus_communis pycom01g17620
rosa_chinensis RchiOBHm_Chr1g0371291
rosa_laevigata RLG00000026973
rosa_multiflora Rmu_sc0016653.1_g000001
rosa_roxburghii Rroxscaffold_4G00285810
rosa_rugosa Rorug01G0362700 Rorug01G0362800
rosa_samantha Rh1AG372800 Rh1BG336300 Rh1CG349700 Rh1DG367400
rosa_wichuraiana Rw1G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 450, 567, 612
AclWI GGATC 3 cut(s) 15, 266, 532
AcoI YGGCCR 1 cut(s) 187
AcvI CACGTG 1 cut(s) 499
AcyI GRCGYC 1 cut(s) 702
AfiI CCNNNNNNNGG 1 cut(s) 521
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 7 cut(s) 23, 127, 184, 241, 376, 433, 595
AluBI AGCT 1 cut(s) 665
AluI AGCT 1 cut(s) 665
AlwI GGATC 3 cut(s) 15, 266, 532
AoxI GGCC 5 cut(s) 187, 436, 493, 501, 556
ApeKI GCWGC 3 cut(s) 36, 197, 588
AspA2I CCTAGG 1 cut(s) 74
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 502, 557
AsuHPI GGTGA 2 cut(s) 296, 650
AvrII CCTAGG 1 cut(s) 74
BaeGI GKGCMC 2 cut(s) 603, 677
BalI TGGCCA 1 cut(s) 189
BauI CACGAG 1 cut(s) 312
BbrPI CACGTG 1 cut(s) 499
BbvI GCAGC 3 cut(s) 48, 184, 600
BccI CCATC 4 cut(s) 292, 337, 346, 476
BceAI ACGGC 2 cut(s) 69, 564
BciT130I CCWGG 7 cut(s) 25, 129, 186, 243, 378, 435, 597
BciVI GTATCC 1 cut(s) 81
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 586
BfoI RGCGCY 1 cut(s) 85
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 7 cut(s) 37, 198, 292, 427, 589, 610, 646
BlnI CCTAGG 1 cut(s) 74
BlsI GCNGC 7 cut(s) 38, 199, 293, 428, 590, 611, 647
Bme1390I CCNGG 7 cut(s) 25, 129, 186, 243, 378, 435, 597
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 502, 557
BmiI GGNNCC 2 cut(s) 32, 240
BmrFI CCNGG 7 cut(s) 25, 129, 186, 243, 378, 435, 597
BmsI GCATC 3 cut(s) 52, 59, 337
BpuEI CTTGAG 1 cut(s) 307
BsaAI YACGTR 1 cut(s) 499
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 3 cut(s) 74, 128, 596
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 2 cut(s) 192, 384
BseBI CCWGG 7 cut(s) 25, 129, 186, 243, 378, 435, 597
BseDI CCNNGG 3 cut(s) 74, 128, 596
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMI GCAATG 2 cut(s) 192, 384
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 4 cut(s) 552, 555, 558, 561
BseSI GKGCMC 2 cut(s) 603, 677
BseXI GCAGC 3 cut(s) 48, 184, 600
Bsh1236I CGCG 3 cut(s) 450, 567, 612
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 5 cut(s) 189, 438, 495, 503, 558
BsiEI CGRYCG 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 521
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 5 cut(s) 189, 438, 495, 503, 558
Bsp1286I GDGCHC 2 cut(s) 603, 677
Bsp143I GATC 4 cut(s) 20, 271, 524, 694
BspANI GGCC 5 cut(s) 189, 438, 495, 503, 558
BspFNI CGCG 3 cut(s) 450, 567, 612
BspLI GGNNCC 2 cut(s) 32, 240
BspMAI CTGCAG 1 cut(s) 590
BspPI GGATC 3 cut(s) 15, 266, 532
BsrDI GCAATG 2 cut(s) 192, 384
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 74, 128, 596
BssMI GATC 4 cut(s) 20, 271, 524, 694
BssNI GRCGYC 1 cut(s) 702
BssSI CACGAG 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 7 cut(s) 25, 129, 186, 243, 378, 435, 597
Bst4CI ACNGT 3 cut(s) 59, 163, 176
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 1 cut(s) 702
BstAPI GCANNNNNTGC 4 cut(s) 366, 423, 480, 642
BstBAI YACGTR 1 cut(s) 499
BstC8I GCNNGC 5 cut(s) 256, 415, 431, 448, 593
BstEII GGTNACC 2 cut(s) 302, 656
BstF5I GGATG 1 cut(s) 338
BstFNI CGCG 3 cut(s) 450, 567, 612
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 4 cut(s) 23, 274, 527, 697
BstMBI GATC 4 cut(s) 20, 271, 524, 694
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 8 cut(s) 288, 366, 423, 435, 480, 564, 585, 642
BstNI CCWGG 7 cut(s) 25, 129, 186, 243, 378, 435, 597
BstNSI RCATGY 1 cut(s) 417
BstPI GGTNACC 2 cut(s) 302, 656
BstSCI CCNGG 7 cut(s) 23, 127, 184, 241, 376, 433, 595
BstSFI CTRYAG 1 cut(s) 586
BstSLI GKGCMC 2 cut(s) 603, 677
BstUI CGCG 3 cut(s) 450, 567, 612
BstV1I GCAGC 3 cut(s) 48, 184, 600
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 5 cut(s) 189, 438, 495, 503, 558
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 1 cut(s) 338
BtsI GCAGTG 2 cut(s) 46, 508
BtsIMutI CAGTG 2 cut(s) 46, 508
Cac8I GCNNGC 5 cut(s) 256, 415, 431, 448, 593
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 502, 557
CseI GACGC 1 cut(s) 691
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 3 cut(s) 344, 414, 532
DpnI GATC 4 cut(s) 22, 273, 526, 696
DpnII GATC 4 cut(s) 20, 271, 524, 694
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 2 cut(s) 663, 670
Eco130I CCWWGG 1 cut(s) 74
Eco72I CACGTG 1 cut(s) 499
Eco91I GGTNACC 2 cut(s) 302, 656
EcoO109I RGGNCCY 1 cut(s) 557
EcoO65I GGTNACC 2 cut(s) 302, 656
EcoRII CCWGG 7 cut(s) 23, 127, 184, 241, 376, 433, 595
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 3 cut(s) 347, 417, 535
FatI CATG 3 cut(s) 343, 413, 531
FauI CCCGC 1 cut(s) 455
FauNDI CATATG 1 cut(s) 285
Fnu4HI GCNGC 7 cut(s) 37, 198, 292, 427, 589, 610, 646
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 7 cut(s) 37, 198, 292, 427, 589, 610, 646
FspBI CTAG 1 cut(s) 75
GlaI GCGC 1 cut(s) 83
GluI GCNGC 7 cut(s) 37, 198, 292, 427, 589, 610, 646
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 5 cut(s) 189, 438, 495, 503, 558
HgaI GACGC 1 cut(s) 691
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 3 cut(s) 347, 417, 535
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 663
HphI GGTGA 2 cut(s) 296, 650
Hpy166II GTNNAC 2 cut(s) 44, 122
Hpy188III TCNNGA 3 cut(s) 18, 314, 522
Hpy8I GTNNAC 2 cut(s) 44, 122
HpyAV CCTTC 3 cut(s) 403, 645, 687
HpyCH4III ACNGT 3 cut(s) 59, 163, 176
HpyCH4IV ACGT 3 cut(s) 46, 498, 603
HpyF10VI GCNNNNNNNGC 8 cut(s) 288, 366, 423, 435, 480, 564, 585, 642
HpySE526I ACGT 3 cut(s) 46, 498, 603
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 3 cut(s) 347, 417, 535
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 4 cut(s) 20, 271, 524, 694
LmnI GCTCC 2 cut(s) 79, 238
Lsp1109I GCAGC 3 cut(s) 48, 184, 600
LweI GCATC 3 cut(s) 52, 59, 337
MaeI CTAG 1 cut(s) 75
MaeII ACGT 3 cut(s) 46, 498, 603
MaeIII GTNAC 6 cut(s) 302, 380, 391, 506, 581, 656
MalI GATC 4 cut(s) 22, 273, 526, 696
MboI GATC 4 cut(s) 20, 271, 524, 694
MboII GAAGA 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 603, 677
MlsI TGGCCA 1 cut(s) 189
MluNI TGGCCA 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 9 cut(s) 21, 25, 345, 452, 530, 533, 536, 539, 548
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 189
MspR9I CCNGG 7 cut(s) 25, 129, 186, 243, 378, 435, 597
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 7 cut(s) 25, 129, 186, 243, 378, 435, 597
MvnI CGCG 3 cut(s) 450, 567, 612
MwoI GCNNNNNNNGC 8 cut(s) 288, 366, 423, 435, 480, 564, 585, 642
NdeI CATATG 1 cut(s) 285
NdeII GATC 4 cut(s) 20, 271, 524, 694
NlaIII CATG 3 cut(s) 347, 417, 535
NlaIV GGNNCC 2 cut(s) 32, 240
NmuCI GTSAC 5 cut(s) 302, 380, 391, 506, 656
NspI RCATGY 1 cut(s) 417
PaeI GCATGC 1 cut(s) 417
PcsI WCGNNNNNNNCGW 2 cut(s) 609, 703
PctI GAATGC 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 23
PkrI GCNGC 7 cut(s) 38, 199, 293, 428, 590, 611, 647
PmaCI CACGTG 1 cut(s) 499
PmlI CACGTG 1 cut(s) 499
Ppu21I YACGTR 1 cut(s) 499
Psp6I CCWGG 7 cut(s) 23, 127, 184, 241, 376, 433, 595
PspCI CACGTG 1 cut(s) 499
PspEI GGTNACC 2 cut(s) 302, 656
PspGI CCWGG 7 cut(s) 23, 127, 184, 241, 376, 433, 595
PspN4I GGNNCC 2 cut(s) 32, 240
PspPI GGNCC 2 cut(s) 502, 557
PstI CTGCAG 1 cut(s) 590
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 7 cut(s) 37, 198, 292, 427, 589, 610, 646
Sau3AI GATC 4 cut(s) 20, 271, 524, 694
Sau96I GGNCC 2 cut(s) 502, 557
ScrFI CCNGG 7 cut(s) 25, 129, 186, 243, 378, 435, 597
SduI GDGCHC 2 cut(s) 603, 677
SetI ASST 9 cut(s) 32, 49, 309, 382, 444, 501, 606, 667, 713
SfaNI GCATC 3 cut(s) 52, 59, 337
SfcI CTRYAG 1 cut(s) 586
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
SphI GCATGC 1 cut(s) 417
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 7 cut(s) 23, 127, 184, 241, 376, 433, 595
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 3 cut(s) 59, 163, 176
TaiI ACGT 3 cut(s) 49, 501, 606
TaqI TCGA 1 cut(s) 212
TauI GCSGC 4 cut(s) 294, 429, 612, 648
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 2 cut(s) 46, 515
TseFI GTSAC 5 cut(s) 302, 380, 391, 506, 656
TseI GCWGC 3 cut(s) 36, 197, 588
Tsp45I GTSAC 5 cut(s) 302, 380, 391, 506, 656
TspGWI ACGGA 1 cut(s) 695
TspRI CASTG 2 cut(s) 46, 515
XceI RCATGY 1 cut(s) 417
XmaJI CCTAGG 1 cut(s) 74
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.