FvH4_7g25370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015143
Physical Location & Seq
Forward (+)
19390359 .. 19392294
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25370.t1

Sequence Viewer

Length: 1500 bp
ATGGCTTCTTCTGGATTTCCTGACATATTTTCATGGATTCAGAGCCTTCCACCAATCTCTCAATGGCCACCAAAAAGTTCCATCGTCTCCATCTCCTTATGCTCCTCTTCAACCTCATCTCAACCACCTCTCAAACTTTCCATATCTAAAAACCCTCAAACTCCAACTCTCTCCTTCTCCATAGTCGCAGACTACAATCTCCCTATTGCGCTTTGGACCTCGAAACACTTCAAGTATAGCCCCAGTAATATCAAGCCTATAAATCAAGAAATCATTTCGATTCTCCTAGTCAATGTCATTGAAGATGTCCTTCACTATGGATCAAAGAAGAATAACTTCTTGATCAAGTTTCTCAAGCTAGACACCATTCCCAACTTGGAAGAAGTCTTCAACCTCTCACTTCTCGCTCTTGTGTTCCTCGTTTGCATCTACGAAGCCCCTGCAGCCCTTCGCTCCAGATGTCTCAACATTCTCAAGAATTACTTGGCAGATTGCTGGTCAAGACAGGCTTCGAAGTCGCTGATGAAGCTTTTAGGATCAAATTTGGAAGAGGAATGGATGCGGTCCATGAACCTTGCGATTACTAATTGGATTGTGGAACACCAAGCAGAACAGAGAACCCTCAAAACACCATCACCACTTTTCTCTTACGCAATTTCGACATTTGGGTTGTGGAAAGTGCAGTTGTATTGTCCTGTCATAGCCATGGACATTGAAAAATCTAGCAGCCCTTCTTCTGGTGATGAGAGGCTGCAATTCTCTCTGAATTACCACCAGCTTGAGGGTGTTCTTCAGTTCAATTACAAAGTCATAGTGAAAGAGAGGTGGATTGATGTGATGCTAAACGTTGATAACATAAGGTGTGATATTGTTAGGCTTGTGAATGAGACTTTAATGAGGGAACGAGGCGCCGGGACAGGTGAAAAGCACTTCCCATCAAGGATCTCATTACAAGTTACTCCAACTCGACAAGCCAATGTGGCGAGTGTTTCAGTGAGCAAGTCTTCCGAGAACCCTGCAAGAGAGATTGGCAAAGAAAAGGGCATAGAGGGTTCGTTCGAACCCCCAAACCCTTACTTGGCAATCAGGGTAGCTGCTAATGAGACCATAACAATGAGCTTGAAGCCGTGGAAGTTTGAGGAATCCGTGTACGGTTACAGTGCAAATCTGAATTGGTTTCTCCATGATAGTGTGGATGGAAGGGAGGTCTTCTCTTCCAAGCCATCAAAGTGTAAACTGATCAACCCCAAGTCTTGGTTCAGAGACAGGTACTCTAGTGCTTACAGGCCCTTCACTAGGCAAGGAGGAGTCATATTTGCTGGTGATGAGTATGGAGAGGGTGTGATGTGGAAAGTGGACAAGGCTGCCATGGGAAAGACTATGGAATGGGAAATTAGAGGGTGGATTTGGTTAACTTATTGGCCTAACAAACATAGAACATTCTATACTGAAACTAGGAGGCTGGAGTTTAGGGAAATCCTCAAAATTACAATAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

500

Amino Acids

57.03

Weight (kDa)

9.07

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40390
fragaria_vesca FvH4_7g25370
malus_domestica MD01G1159800.v1.1
prunus_persica Prupe.2G257800_v2.0.a1
pyrus_communis pycom01g17620
rosa_chinensis RchiOBHm_Chr1g0371291
rosa_laevigata RLG00000026973
rosa_multiflora Rmu_sc0016653.1_g000001
rosa_roxburghii Rroxscaffold_4G00285810
rosa_rugosa Rorug01G0362700 Rorug01G0362800
rosa_samantha Rh1AG372800 Rh1BG336300 Rh1CG349700 Rh1DG367400
rosa_wichuraiana Rw1G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 908
AccB7I CCANNNNNTGG 1 cut(s) 1254
AciI CCGC 1 cut(s) 562
AclI AACGTT 1 cut(s) 846
AclWI GGATC 3 cut(s) 328, 544, 950
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 909
AfaI GTAC 2 cut(s) 1151, 1271
AfiI CCNNNNNNNGG 5 cut(s) 737, 781, 1078, 1254, 1296
AgsI TTSAA 7 cut(s) 111, 232, 302, 391, 716, 799, 1123
AjuI GAANNNNNNNTTGG 2 cut(s) 1241, 1273
AluBI AGCT 6 cut(s) 358, 529, 778, 1094, 1119, 1496
AluI AGCT 6 cut(s) 358, 529, 778, 1094, 1119, 1496
Alw26I GTCTC 5 cut(s) 91, 467, 881, 1097, 1257
AlwI GGATC 3 cut(s) 328, 544, 950
AoxI GGCC 3 cut(s) 65, 1286, 1421
ApeKI GCWGC 5 cut(s) 443, 726, 751, 1094, 1364
ApoI RAATTY 1 cut(s) 541
Asp700I GAANNNNTTC 2 cut(s) 227, 335
AspLEI GCGC 2 cut(s) 211, 911
AspS9I GGNCC 3 cut(s) 216, 564, 1287
AsuC2I CCSGG 1 cut(s) 913
AsuHPI GGTGA 4 cut(s) 627, 752, 932, 1334
AsuII TTCGAA 2 cut(s) 512, 1059
AvaII GGWCC 2 cut(s) 216, 564
BaeI ACNNNNGTAYC 2 cut(s) 1261, 1294
BalI TGGCCA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 908
BbsI GAAGAC 3 cut(s) 379, 996, 1201
BbvI GCAGC 5 cut(s) 455, 738, 738, 1081, 1351
BccI CCATC 6 cut(s) 89, 98, 640, 943, 1190, 1231
BceAI ACGGC 1 cut(s) 1111
BcgI CGANNNNNNTGC 4 cut(s) 422, 456, 998, 1032
BclI TGATCA 2 cut(s) 342, 1239
BcnI CCSGG 1 cut(s) 913
BcoDI GTCTC 5 cut(s) 91, 467, 881, 1097, 1257
BfaI CTAG 6 cut(s) 287, 359, 723, 1275, 1296, 1455
BfmI CTRYAG 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 912
BglI GCCNNNNNGGC 1 cut(s) 980
BisI GCNGC 5 cut(s) 444, 727, 752, 1095, 1365
BlsI GCNGC 5 cut(s) 445, 728, 753, 1096, 1366
Bme1390I CCNGG 1 cut(s) 913
Bme18I GGWCC 2 cut(s) 216, 564
BmgT120I GGNCC 3 cut(s) 216, 564, 1287
BmiI GGNNCC 1 cut(s) 910
BmrFI CCNGG 1 cut(s) 913
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 3 cut(s) 435, 549, 828
BmuI ACTGGG 1 cut(s) 237
BpiI GAAGAC 3 cut(s) 379, 996, 1201
BplI GAGNNNNNCTC 2 cut(s) 1196, 1228
BpmI CTGGAG 2 cut(s) 439, 1484
Bpu14I TTCGAA 2 cut(s) 512, 1059
BpuEI CTTGAG 3 cut(s) 338, 458, 800
BpuMI CCSGG 1 cut(s) 913
BsaHI GRCGYC 1 cut(s) 909
BsaI GGTCTC 1 cut(s) 1097
BsaJI CCNNGG 3 cut(s) 705, 1127, 1368
BsaXI ACNNNNNCTCC 2 cut(s) 1326, 1356
Bsc4I CCNNNNNNNGG 5 cut(s) 737, 781, 1078, 1254, 1296
Bse1I ACTGG 1 cut(s) 243
BseDI CCNNGG 3 cut(s) 705, 1127, 1368
BseGI GGATG 2 cut(s) 564, 1201
BseLI CCNNNNNNNGG 5 cut(s) 737, 781, 1078, 1254, 1296
BseNI ACTGG 1 cut(s) 243
BseRI GAGGAG 2 cut(s) 94, 1320
BseXI GCAGC 5 cut(s) 455, 738, 738, 1081, 1351
BsgI GTGCAG 1 cut(s) 701
BshFI GGCC 3 cut(s) 67, 1288, 1423
BshNI GGYRCC 1 cut(s) 908
BsiSI CCGG 1 cut(s) 912
BslFI GGGAC 1 cut(s) 928
BslI CCNNNNNNNGG 5 cut(s) 737, 781, 1078, 1254, 1296
BsmAI GTCTC 5 cut(s) 91, 467, 881, 1097, 1257
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 928
BsnI GGCC 3 cut(s) 67, 1288, 1423
Bso31I GGTCTC 1 cut(s) 1097
Bsp119I TTCGAA 2 cut(s) 512, 1059
Bsp143I GATC 5 cut(s) 320, 342, 536, 942, 1239
Bsp19I CCATGG 2 cut(s) 705, 1368
BspACI CCGC 1 cut(s) 562
BspANI GGCC 3 cut(s) 67, 1288, 1423
BspLI GGNNCC 1 cut(s) 910
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 3 cut(s) 328, 544, 950
BspT104I TTCGAA 2 cut(s) 512, 1059
BspT107I GGYRCC 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 1097
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 3 cut(s) 705, 1127, 1368
BssMI GATC 5 cut(s) 320, 342, 536, 942, 1239
BssNI GRCGYC 1 cut(s) 909
BssT1I CCWWGG 2 cut(s) 705, 1368
Bst4CI ACNGT 2 cut(s) 1154, 1160
Bst6I CTCTTC 3 cut(s) 112, 543, 1219
BstACI GRCGYC 1 cut(s) 909
BstBI TTCGAA 2 cut(s) 512, 1059
BstDSI CCRYGG 3 cut(s) 705, 1127, 1368
BstENI CCTNNNNNAGG 1 cut(s) 1294
BstF5I GGATG 2 cut(s) 564, 1201
BstH2I RGCGCY 1 cut(s) 912
BstHHI GCGC 2 cut(s) 211, 911
BstKTI GATC 5 cut(s) 323, 345, 539, 945, 1242
BstMAI GTCTC 5 cut(s) 91, 467, 881, 1097, 1257
BstMBI GATC 5 cut(s) 320, 342, 536, 942, 1239
BstMWI GCNNNNNNNGC 3 cut(s) 443, 526, 980
BstSCI CCNGG 1 cut(s) 911
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 5 cut(s) 455, 738, 738, 1081, 1351
BstV2I GAAGAC 3 cut(s) 379, 996, 1201
BstX2I RGATCY 1 cut(s) 942
BstYI RGATCY 1 cut(s) 942
BsuRI GGCC 3 cut(s) 67, 1288, 1423
BtgI CCRYGG 3 cut(s) 705, 1127, 1368
BtsCI GGATG 2 cut(s) 564, 1201
BtsIMutI CAGTG 2 cut(s) 999, 1165
CfoI GCGC 2 cut(s) 211, 911
Cfr13I GGNCC 3 cut(s) 216, 564, 1287
Csp6I GTAC 2 cut(s) 1150, 1270
CviAII CATG 5 cut(s) 33, 568, 706, 1184, 1369
CviQI GTAC 2 cut(s) 1150, 1270
DinI GGCGCC 1 cut(s) 910
DpnI GATC 5 cut(s) 322, 344, 538, 944, 1241
DpnII GATC 5 cut(s) 320, 342, 536, 942, 1239
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 3 cut(s) 112, 543, 1219
EarI CTCTTC 3 cut(s) 112, 543, 1219
Eco130I CCWWGG 2 cut(s) 705, 1368
Eco31I GGTCTC 1 cut(s) 1097
Eco47I GGWCC 2 cut(s) 216, 564
Eco57I CTGAAG 1 cut(s) 776
EcoNI CCTNNNNNAGG 1 cut(s) 1294
EcoO109I RGGNCCY 1 cut(s) 1287
EcoT14I CCWWGG 2 cut(s) 705, 1368
EgeI GGCGCC 1 cut(s) 910
EheI GGCGCC 1 cut(s) 910
ErhI CCWWGG 2 cut(s) 705, 1368
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 5 cut(s) 36, 571, 709, 1187, 1372
FalI AAGNNNNNCTT 8 cut(s) 294, 326, 320, 352, 467, 499, 493, 525
FaqI GGGAC 1 cut(s) 928
FatI CATG 5 cut(s) 32, 567, 705, 1183, 1368
FbaI TGATCA 2 cut(s) 342, 1239
Fnu4HI GCNGC 5 cut(s) 444, 727, 752, 1095, 1365
FokI GGATG 2 cut(s) 571, 1208
Fsp4HI GCNGC 5 cut(s) 444, 727, 752, 1095, 1365
FspBI CTAG 6 cut(s) 287, 359, 723, 1275, 1296, 1455
GlaI GCGC 2 cut(s) 210, 910
GluI GCNGC 5 cut(s) 444, 727, 752, 1095, 1365
GsuI CTGGAG 2 cut(s) 439, 1484
HaeII RGCGCY 1 cut(s) 912
HaeIII GGCC 3 cut(s) 67, 1288, 1423
HapII CCGG 1 cut(s) 912
HhaI GCGC 2 cut(s) 211, 911
Hin1I GRCGYC 1 cut(s) 909
Hin1II CATG 5 cut(s) 36, 571, 709, 1187, 1372
Hin6I GCGC 2 cut(s) 209, 909
HinP1I GCGC 2 cut(s) 209, 909
HincII GTYRAC 1 cut(s) 1413
HindII GTYRAC 1 cut(s) 1413
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 4 cut(s) 37, 280, 1142, 1308
HpaI GTTAAC 1 cut(s) 1413
HpaII CCGG 1 cut(s) 912
HphI GGTGA 4 cut(s) 627, 752, 932, 1334
Hpy166II GTNNAC 4 cut(s) 1150, 1235, 1357, 1413
Hpy188I TCNGA 5 cut(s) 42, 765, 1009, 1170, 1262
Hpy188III TCNNGA 7 cut(s) 12, 20, 266, 340, 456, 475, 501
Hpy8I GTNNAC 4 cut(s) 1150, 1235, 1357, 1413
HpyAV CCTTC 7 cut(s) 56, 184, 320, 458, 741, 1194, 1300
HpyCH4III ACNGT 2 cut(s) 1154, 1160
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 6 cut(s) 426, 443, 682, 754, 1019, 1163
HpyF10VI GCNNNNNNNGC 3 cut(s) 443, 526, 980
HpySE526I ACGT 1 cut(s) 846
Hsp92I GRCGYC 1 cut(s) 909
Hsp92II CATG 5 cut(s) 36, 571, 709, 1187, 1372
HspAI GCGC 2 cut(s) 209, 909
KasI GGCGCC 1 cut(s) 908
Ksp22I TGATCA 2 cut(s) 342, 1239
KspAI GTTAAC 1 cut(s) 1413
Kzo9I GATC 5 cut(s) 320, 342, 536, 942, 1239
LmnI GCTCC 2 cut(s) 107, 458
Lsp1109I GCAGC 5 cut(s) 455, 738, 738, 1081, 1351
LweI GCATC 3 cut(s) 435, 549, 828
MaeI CTAG 6 cut(s) 287, 359, 723, 1275, 1296, 1455
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 2 cut(s) 955, 1154
MalI GATC 5 cut(s) 322, 344, 538, 944, 1241
MboI GATC 5 cut(s) 320, 342, 536, 942, 1239
MflI RGATCY 1 cut(s) 942
MlsI TGGCCA 1 cut(s) 67
MluNI TGGCCA 1 cut(s) 67
Mly113I GGCGCC 1 cut(s) 909
MlyI GAGTC 1 cut(s) 1317
MmeI TCCRAC 2 cut(s) 188, 986
Mox20I TGGCCA 1 cut(s) 67
MroXI GAANNNNTTC 2 cut(s) 227, 335
MscI TGGCCA 1 cut(s) 67
MseI TTAA 3 cut(s) 893, 1412, 1498
MslI CAYNNNNRTG 4 cut(s) 704, 1112, 1188, 1228
Msp20I TGGCCA 1 cut(s) 67
MspI CCGG 1 cut(s) 912
MspR9I CCNGG 1 cut(s) 913
MwoI GCNNNNNNNGC 3 cut(s) 443, 526, 980
NarI GGCGCC 1 cut(s) 909
NciI CCSGG 1 cut(s) 913
NcoI CCATGG 2 cut(s) 705, 1368
NdeII GATC 5 cut(s) 320, 342, 536, 942, 1239
NlaIII CATG 5 cut(s) 36, 571, 709, 1187, 1372
NlaIV GGNNCC 1 cut(s) 910
NspV TTCGAA 2 cut(s) 512, 1059
PdmI GAANNNNTTC 2 cut(s) 227, 335
PfeI GAWTC 3 cut(s) 37, 280, 1142
PflMI CCANNNNNTGG 1 cut(s) 1254
PkrI GCNGC 5 cut(s) 445, 728, 753, 1096, 1366
PleI GAGTC 1 cut(s) 1316
PluTI GGCGCC 1 cut(s) 912
PpsI GAGTC 1 cut(s) 1316
Psp1406I AACGTT 1 cut(s) 846
PspN4I GGNNCC 1 cut(s) 910
PspPI GGNCC 3 cut(s) 216, 564, 1287
PsrI GAACNNNNNNTAC 2 cut(s) 1429, 1461
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 1 cut(s) 942
RsaI GTAC 2 cut(s) 1151, 1271
RsaNI GTAC 2 cut(s) 1150, 1270
RseI CAYNNNNRTG 4 cut(s) 704, 1112, 1188, 1228
SaqAI TTAA 3 cut(s) 893, 1412, 1498
SatI GCNGC 5 cut(s) 444, 727, 752, 1095, 1365
Sau3AI GATC 5 cut(s) 320, 342, 536, 942, 1239
Sau96I GGNCC 3 cut(s) 216, 564, 1287
SchI GAGTC 1 cut(s) 1317
ScrFI CCNGG 1 cut(s) 913
SfaNI GCATC 3 cut(s) 435, 549, 828
SfcI CTRYAG 1 cut(s) 441
SfoI GGCGCC 1 cut(s) 910
SfuI TTCGAA 2 cut(s) 512, 1059
SinI GGWCC 2 cut(s) 216, 564
SmiMI CAYNNNNRTG 4 cut(s) 704, 1112, 1188, 1228
SmlI CTYRAG 3 cut(s) 353, 473, 779
SmoI CTYRAG 3 cut(s) 353, 473, 779
SsiI CCGC 1 cut(s) 562
SspDI GGCGCC 1 cut(s) 908
SspMI CTAG 6 cut(s) 287, 359, 723, 1275, 1296, 1455
StyD4I CCNGG 1 cut(s) 911
StyI CCWWGG 2 cut(s) 705, 1368
TaaI ACNGT 2 cut(s) 1154, 1160
TaiI ACGT 1 cut(s) 849
TaqI TCGA 6 cut(s) 221, 278, 512, 659, 967, 1059
TfiI GAWTC 3 cut(s) 37, 280, 1142
Tru1I TTAA 3 cut(s) 893, 1412, 1498
Tru9I TTAA 3 cut(s) 893, 1412, 1498
TscAI CASTG 2 cut(s) 999, 1165
TseI GCWGC 5 cut(s) 443, 726, 751, 1094, 1364
TspDTI ATGAA 3 cut(s) 21, 539, 584
TspGWI ACGGA 1 cut(s) 1135
TspRI CASTG 2 cut(s) 999, 1165
Van91I CCANNNNNTGG 1 cut(s) 1254
VpaK11BI GGWCC 2 cut(s) 216, 564
XagI CCTNNNNNAGG 1 cut(s) 1294
XapI RAATTY 1 cut(s) 541
XcmI CCANNNNNNNNNTGG 2 cut(s) 60, 373
XmnI GAANNNNTTC 2 cut(s) 227, 335
XspI CTAG 6 cut(s) 287, 359, 723, 1275, 1296, 1455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.