Rw1G032790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015143
Physical Location & Seq
Forward (+)
61052793 .. 61054384
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G032790.1

Sequence Viewer

Length: 1473 bp
ATGGCTTCTTCTGGATTTCCTGACATATTTTCATGGATTCAAAGCCTTCCTCCAATCTCTCAATGGCCACCAAAAAGTTCCAATGTCTCCATATCCATATGTTCTTCTCCAAGTTCATCTCAACCATCCCTCAAACTCTCCATATCTATGAACCCTCAAACCGCAACTCTCTCTTTCTCCATAATTGCAGATTTCAATCTCCCTATCGCGCTTTGGACCTCGAAACACTTCAAATTCAGCCCCAATAACATCAAGCCAATAAATCAAGAAACCATTTCCAGTCTCCTAGTCAATGTCATTGAAGATGTTCTTCACTATGGCTCAAAGAAGAATAACTTCTTGATCAAGTTTCTCAAGCTAGACTCCATTGCCAACTTGGAAGAAGTCTTCAACCTCTCATTTCTCGCTCTTCTGTGCCTCGTTTGCATCTACGAAGCCCCTGCAGGCCTTCGCTCCGGATGTCTCAACATTCTCAAGAATTACTTGGCAGATTGCTGGTCAAGACAGGCTTCGAAGTCGCTGATGAAGCTTTTAGGATCAAATTTGGAAGAGGAATGGATGCGGTCCATGAACCTTGCGATTACCAATTGGATTGTGGAGTTCCAAGCAGAACAGAGAACCCTTAAAACACCATCACCACTTTTCTCTTACGCAATTTCGACGTTTGGGTTGTTGAAAGTGCAGTTGTATTGTCCTGTCATAGCCATGGACATTGAAAAATCTAGCAGCCCTTCTTGTGGTGATGAGAGACTGCAATTCTCTCTGAATTACCACCAGCTTGAGGGTGTTCTTCAGTTCAATTACAAAGTCATAGTCAAGAGAGGTGGATTGATGTGTGATATTGTTAGGCTTGTGAATGAGACTCTAATGAATGAACAAGGCGCCGGGACAGGTGAAAAGCATTTCCCATCAAGAATTTCATTACAAATTACTCCAACTCGACAAACCAATGTGGTGAGTGTTTCAGTGAGCAAGTCTTCCGAGAACCCTACAAGAGAGATTGGCAAAGAAAAGGGTATAGAGGGTTCATTTGAACCCCCAAACCCTTACTTGGCGTTCAAGGTATCGGCTGGGGAGACCATAACAATGAGCTTGAAGCCATGGAAGTTCGAGGAATCTGTGTACGGATATAGTGCAAACTTGAATTGGTTTCTCCATGATGGTGTGGATGGTAGGGAGGTCTTCTCTTCCAAGCCATCAAAGTTTCAGCTGATTAACCCCAAGGCTTGGTTCAAAGACAGGTACTCTAGTGCTTATAGGCCTTTCACTAGGCAAGGAGGAGTCATTTTTGCTGGTGATGAGTATGGAGAGGGTGTGATGTGGAAGGTAGACAAAGCTGCCCTTGGAAAGACTATGGAATGGGAAATTAAAGGGTGGATTTGGTTAACTTATTGGCCTAACAAACATAAAACATTTTATACTGAGACGAGGAGGCTGGAATTTAGAGAAATCCTCAAACTTACAATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

490

Amino Acids

55.42

Weight (kDa)

8.8

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40390
fragaria_vesca FvH4_7g25370
malus_domestica MD01G1159800.v1.1
prunus_persica Prupe.2G257800_v2.0.a1
pyrus_communis pycom01g17620
rosa_chinensis RchiOBHm_Chr1g0371291
rosa_laevigata RLG00000026973
rosa_multiflora Rmu_sc0016653.1_g000001
rosa_roxburghii Rroxscaffold_4G00285810
rosa_rugosa Rorug01G0362700 Rorug01G0362800
rosa_samantha Rh1AG372800 Rh1BG336300 Rh1CG349700 Rh1DG367400
rosa_wichuraiana Rw1G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 881
AccB7I CCANNNNNTGG 1 cut(s) 1227
AccI GTMKAC 1 cut(s) 1329
AccII CGCG 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 455
AciI CCGC 2 cut(s) 162, 562
AclWI GGATC 1 cut(s) 544
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 4 cut(s) 233, 541, 915, 1439
AcuI CTGAAG 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 882
AfaI GTAC 2 cut(s) 1124, 1244
AfiI CCNNNNNNNGG 4 cut(s) 737, 781, 1051, 1227
AjuI GAANNNNNNNTTGG 2 cut(s) 1214, 1246
AluBI AGCT 6 cut(s) 358, 529, 778, 1092, 1210, 1337
AluI AGCT 6 cut(s) 358, 529, 778, 1092, 1210, 1337
Alw26I GTCTC 7 cut(s) 91, 287, 467, 742, 854, 1070, 1418
AlwI GGATC 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 455
AoxI GGCC 4 cut(s) 65, 445, 1259, 1394
ApeKI GCWGC 2 cut(s) 726, 1337
ApoI RAATTY 4 cut(s) 233, 541, 915, 1439
ArsI GACNNNNNNTTYG 2 cut(s) 798, 830
Asp700I GAANNNNTTC 3 cut(s) 227, 306, 335
AspLEI GCGC 2 cut(s) 211, 884
AspS9I GGNCC 2 cut(s) 216, 564
AsuC2I CCSGG 1 cut(s) 886
AsuHPI GGTGA 5 cut(s) 627, 752, 905, 967, 1307
AsuII TTCGAA 1 cut(s) 512
AvaII GGWCC 2 cut(s) 216, 564
BaeI ACNNNNGTAYC 2 cut(s) 1234, 1267
BalI TGGCCA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 881
BbsI GAAGAC 3 cut(s) 379, 969, 1174
BbvI GCAGC 2 cut(s) 738, 1324
BccI CCATC 6 cut(s) 133, 640, 916, 1154, 1163, 1204
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 1 cut(s) 886
BcoDI GTCTC 7 cut(s) 91, 287, 467, 742, 854, 1070, 1418
BfaI CTAG 5 cut(s) 287, 359, 723, 1248, 1269
BfmI CTRYAG 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 885
BisI GCNGC 2 cut(s) 727, 1338
BlsI GCNGC 2 cut(s) 728, 1339
Bme1390I CCNGG 1 cut(s) 886
Bme18I GGWCC 2 cut(s) 216, 564
BmgT120I GGNCC 2 cut(s) 216, 564
BmiI GGNNCC 1 cut(s) 883
BmrFI CCNGG 1 cut(s) 886
BmsI GCATC 2 cut(s) 435, 549
BpiI GAAGAC 3 cut(s) 379, 969, 1174
BplI GAGNNNNNCTC 4 cut(s) 1169, 1201, 1437, 1469
Bpu14I TTCGAA 1 cut(s) 512
BpuEI CTTGAG 3 cut(s) 338, 458, 800
BpuMI CCSGG 1 cut(s) 886
BsaBI GATNNNNATC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 1070
BsaJI CCNNGG 4 cut(s) 705, 1100, 1221, 1342
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 1299, 1329
Bsc4I CCNNNNNNNGG 4 cut(s) 737, 781, 1051, 1227
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 195
BseAI TCCGGA 1 cut(s) 455
BseDI CCNNGG 4 cut(s) 705, 1100, 1221, 1342
BseGI GGATG 4 cut(s) 125, 464, 564, 1174
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 4 cut(s) 737, 781, 1051, 1227
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 1413
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 2 cut(s) 1293, 1444
BseXI GCAGC 2 cut(s) 738, 1324
BseYI CCCAGC 1 cut(s) 1070
BsgI GTGCAG 1 cut(s) 701
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 4 cut(s) 67, 447, 1261, 1396
BshNI GGYRCC 1 cut(s) 881
BsiSI CCGG 2 cut(s) 456, 885
BslFI GGGAC 1 cut(s) 901
BslI CCNNNNNNNGG 4 cut(s) 737, 781, 1051, 1227
BsmAI GTCTC 7 cut(s) 91, 287, 467, 742, 854, 1070, 1418
BsmBI CGTCTC 1 cut(s) 1418
BsmFI GGGAC 1 cut(s) 901
BsnI GGCC 4 cut(s) 67, 447, 1261, 1396
Bso31I GGTCTC 1 cut(s) 1070
Bsp119I TTCGAA 1 cut(s) 512
Bsp13I TCCGGA 1 cut(s) 455
Bsp143I GATC 2 cut(s) 342, 536
Bsp19I CCATGG 2 cut(s) 705, 1100
BspACI CCGC 2 cut(s) 162, 562
BspANI GGCC 4 cut(s) 67, 447, 1261, 1396
BspCNI CTCAG 1 cut(s) 1414
BspEI TCCGGA 1 cut(s) 455
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 883
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 1 cut(s) 544
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 881
BspTNI GGTCTC 1 cut(s) 1070
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 4 cut(s) 705, 1100, 1221, 1342
BssMI GATC 2 cut(s) 342, 536
BssNI GRCGYC 1 cut(s) 882
BssT1I CCWWGG 4 cut(s) 705, 1100, 1221, 1342
Bst6I CTCTTC 3 cut(s) 414, 543, 1192
BstACI GRCGYC 1 cut(s) 882
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 1 cut(s) 1422
BstDSI CCRYGG 2 cut(s) 705, 1100
BstF5I GGATG 4 cut(s) 125, 464, 564, 1174
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 885
BstHHI GCGC 2 cut(s) 211, 884
BstKTI GATC 2 cut(s) 345, 539
BstMAI GTCTC 7 cut(s) 91, 287, 467, 742, 854, 1070, 1418
BstMBI GATC 2 cut(s) 342, 536
BstMWI GCNNNNNNNGC 2 cut(s) 423, 526
BstSCI CCNGG 1 cut(s) 884
BstSFI CTRYAG 1 cut(s) 441
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 738, 1324
BstV2I GAAGAC 3 cut(s) 379, 969, 1174
BsuRI GGCC 4 cut(s) 67, 447, 1261, 1396
BtgI CCRYGG 2 cut(s) 705, 1100
BtsCI GGATG 4 cut(s) 125, 464, 564, 1174
BtsIMutI CAGTG 1 cut(s) 972
Cac8I GCNNGC 1 cut(s) 445
CfoI GCGC 2 cut(s) 211, 884
Cfr13I GGNCC 2 cut(s) 216, 564
Csp6I GTAC 2 cut(s) 1123, 1243
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 5 cut(s) 33, 568, 706, 1101, 1157
CviQI GTAC 2 cut(s) 1123, 1243
DdeI CTNAG 1 cut(s) 1422
DinI GGCGCC 1 cut(s) 883
DpnI GATC 2 cut(s) 344, 538
DpnII GATC 2 cut(s) 342, 536
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 3 cut(s) 414, 543, 1192
EarI CTCTTC 3 cut(s) 414, 543, 1192
Eco130I CCWWGG 4 cut(s) 705, 1100, 1221, 1342
Eco147I AGGCCT 2 cut(s) 447, 1261
Eco31I GGTCTC 1 cut(s) 1070
Eco47I GGWCC 2 cut(s) 216, 564
Eco57I CTGAAG 1 cut(s) 776
EcoT14I CCWWGG 4 cut(s) 705, 1100, 1221, 1342
EgeI GGCGCC 1 cut(s) 883
EheI GGCGCC 1 cut(s) 883
ErhI CCWWGG 4 cut(s) 705, 1100, 1221, 1342
Esp3I CGTCTC 1 cut(s) 1418
FaeI CATG 5 cut(s) 36, 571, 709, 1104, 1160
FaqI GGGAC 1 cut(s) 901
FatI CATG 5 cut(s) 32, 567, 705, 1100, 1156
FauNDI CATATG 1 cut(s) 98
FbaI TGATCA 1 cut(s) 342
FblI GTMKAC 1 cut(s) 1329
Fnu4HI GCNGC 2 cut(s) 727, 1338
FokI GGATG 4 cut(s) 112, 471, 571, 1181
Fsp4HI GCNGC 2 cut(s) 727, 1338
FspBI CTAG 5 cut(s) 287, 359, 723, 1248, 1269
GlaI GCGC 2 cut(s) 210, 883
GluI GCNGC 2 cut(s) 727, 1338
GsaI CCCAGC 1 cut(s) 1074
HaeII RGCGCY 1 cut(s) 885
HaeIII GGCC 4 cut(s) 67, 447, 1261, 1396
HapII CCGG 2 cut(s) 456, 885
HhaI GCGC 2 cut(s) 211, 884
Hin1I GRCGYC 1 cut(s) 882
Hin1II CATG 5 cut(s) 36, 571, 709, 1104, 1160
Hin6I GCGC 2 cut(s) 209, 882
HinP1I GCGC 2 cut(s) 209, 882
HincII GTYRAC 1 cut(s) 1386
HindII GTYRAC 1 cut(s) 1386
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 5 cut(s) 37, 362, 862, 1115, 1281
HpaI GTTAAC 1 cut(s) 1386
HpaII CCGG 2 cut(s) 456, 885
HphI GGTGA 5 cut(s) 627, 752, 905, 967, 1307
Hpy166II GTNNAC 3 cut(s) 1123, 1330, 1386
Hpy188I TCNGA 2 cut(s) 765, 982
Hpy188III TCNNGA 9 cut(s) 12, 20, 266, 340, 456, 475, 501, 817, 912
Hpy8I GTNNAC 3 cut(s) 1123, 1330, 1386
Hpy99I CGWCG 1 cut(s) 664
HpyAV CCTTC 4 cut(s) 56, 458, 741, 1318
HpyCH4IV ACGT 1 cut(s) 662
HpyCH4V TGCA 6 cut(s) 188, 426, 443, 682, 754, 1136
HpyF10VI GCNNNNNNNGC 2 cut(s) 423, 526
HpyF3I CTNAG 1 cut(s) 1422
HpySE526I ACGT 1 cut(s) 662
Hsp92I GRCGYC 1 cut(s) 882
Hsp92II CATG 5 cut(s) 36, 571, 709, 1104, 1160
HspAI GCGC 2 cut(s) 209, 882
KasI GGCGCC 1 cut(s) 881
Kpn2I TCCGGA 1 cut(s) 455
Ksp22I TGATCA 1 cut(s) 342
KspAI GTTAAC 1 cut(s) 1386
Kzo9I GATC 2 cut(s) 342, 536
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 458
Lsp1109I GCAGC 2 cut(s) 738, 1324
LweI GCATC 2 cut(s) 435, 549
MaeI CTAG 5 cut(s) 287, 359, 723, 1248, 1269
MaeII ACGT 1 cut(s) 662
MalI GATC 2 cut(s) 344, 538
MboI GATC 2 cut(s) 342, 536
MfeI CAATTG 2 cut(s) 586, 1464
MlsI TGGCCA 1 cut(s) 67
MluNI TGGCCA 1 cut(s) 67
Mly113I GGCGCC 1 cut(s) 882
MlyI GAGTC 3 cut(s) 356, 856, 1290
MmeI TCCRAC 1 cut(s) 959
Mox20I TGGCCA 1 cut(s) 67
MroI TCCGGA 1 cut(s) 455
MroXI GAANNNNTTC 3 cut(s) 227, 306, 335
MscI TGGCCA 1 cut(s) 67
MseI TTAA 5 cut(s) 624, 1215, 1368, 1385, 1471
MslI CAYNNNNRTG 4 cut(s) 146, 704, 1085, 1161
Msp20I TGGCCA 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 1210
MspI CCGG 2 cut(s) 456, 885
MspR9I CCNGG 1 cut(s) 886
MunI CAATTG 2 cut(s) 586, 1464
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 423, 526
NarI GGCGCC 1 cut(s) 882
NciI CCSGG 1 cut(s) 886
NcoI CCATGG 2 cut(s) 705, 1100
NdeI CATATG 1 cut(s) 98
NdeII GATC 2 cut(s) 342, 536
NlaIII CATG 5 cut(s) 36, 571, 709, 1104, 1160
NlaIV GGNNCC 1 cut(s) 883
NspV TTCGAA 1 cut(s) 512
PceI AGGCCT 2 cut(s) 447, 1261
PciSI GCTCTTC 1 cut(s) 414
PdmI GAANNNNTTC 3 cut(s) 227, 306, 335
PfeI GAWTC 2 cut(s) 37, 1115
PflMI CCANNNNNTGG 1 cut(s) 1227
PkrI GCNGC 2 cut(s) 728, 1339
PleI GAGTC 3 cut(s) 356, 856, 1289
PluTI GGCGCC 1 cut(s) 885
PpsI GAGTC 3 cut(s) 356, 856, 1289
PspFI CCCAGC 1 cut(s) 1070
PspN4I GGNNCC 1 cut(s) 883
PspPI GGNCC 2 cut(s) 216, 564
PsrI GAACNNNNNNTAC 2 cut(s) 1009, 1041
PstI CTGCAG 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 1210
RsaI GTAC 2 cut(s) 1124, 1244
RsaNI GTAC 2 cut(s) 1123, 1243
RseI CAYNNNNRTG 4 cut(s) 146, 704, 1085, 1161
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 5 cut(s) 624, 1215, 1368, 1385, 1471
SatI GCNGC 2 cut(s) 727, 1338
Sau3AI GATC 2 cut(s) 342, 536
Sau96I GGNCC 2 cut(s) 216, 564
SbfI CCTGCAGG 1 cut(s) 445
SchI GAGTC 3 cut(s) 356, 856, 1290
ScrFI CCNGG 1 cut(s) 886
SdaI CCTGCAGG 1 cut(s) 445
SfaNI GCATC 2 cut(s) 435, 549
SfcI CTRYAG 1 cut(s) 441
SfoI GGCGCC 1 cut(s) 883
SfuI TTCGAA 1 cut(s) 512
SinI GGWCC 2 cut(s) 216, 564
SmiMI CAYNNNNRTG 4 cut(s) 146, 704, 1085, 1161
SmlI CTYRAG 3 cut(s) 353, 473, 779
SmoI CTYRAG 3 cut(s) 353, 473, 779
Sse8387I CCTGCAGG 1 cut(s) 445
SseBI AGGCCT 2 cut(s) 447, 1261
SsiI CCGC 2 cut(s) 162, 562
SspDI GGCGCC 1 cut(s) 881
SspMI CTAG 5 cut(s) 287, 359, 723, 1248, 1269
StuI AGGCCT 2 cut(s) 447, 1261
StyD4I CCNGG 1 cut(s) 884
StyI CCWWGG 4 cut(s) 705, 1100, 1221, 1342
TaiI ACGT 1 cut(s) 665
TaqI TCGA 5 cut(s) 221, 512, 659, 940, 1110
TfiI GAWTC 2 cut(s) 37, 1115
Tru1I TTAA 5 cut(s) 624, 1215, 1368, 1385, 1471
Tru9I TTAA 5 cut(s) 624, 1215, 1368, 1385, 1471
TscAI CASTG 1 cut(s) 972
TseI GCWGC 2 cut(s) 726, 1337
TspDTI ATGAA 9 cut(s) 21, 105, 164, 539, 584, 884, 888, 909, 1017
TspGWI ACGGA 1 cut(s) 1140
TspRI CASTG 1 cut(s) 972
Van91I CCANNNNNTGG 1 cut(s) 1227
VpaK11BI GGWCC 2 cut(s) 216, 564
XapI RAATTY 4 cut(s) 233, 541, 915, 1439
XcmI CCANNNNNNNNNTGG 3 cut(s) 60, 373, 592
XmiI GTMKAC 1 cut(s) 1329
XmnI GAANNNNTTC 3 cut(s) 227, 306, 335
XspI CTAG 5 cut(s) 287, 359, 723, 1248, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.