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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40390 |
| fragaria_vesca | FvH4_7g25370 |
| malus_domestica | MD01G1159800.v1.1 |
| prunus_persica | Prupe.2G257800_v2.0.a1 |
| pyrus_communis | pycom01g17620 |
| rosa_chinensis | RchiOBHm_Chr1g0371291 |
| rosa_laevigata | RLG00000026973 |
| rosa_multiflora | Rmu_sc0016653.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00285810 |
| rosa_rugosa | Rorug01G0362700 Rorug01G0362800 |
| rosa_samantha | Rh1AG372800 Rh1BG336300 Rh1CG349700 Rh1DG367400 |
| rosa_wichuraiana | Rw1G032790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 425 |
| AccII | CGCG | 1 cut(s) | 902 |
| AciI | CCGC | 3 cut(s) | 432, 902, 1356 |
| AclWI | GGATC | 2 cut(s) | 522, 535 |
| AcoI | YGGCCR | 1 cut(s) | 65 |
| AcsI | RAATTY | 6 cut(s) | 224, 338, 757, 933, 1156, 1457 |
| AfaI | GTAC | 1 cut(s) | 1142 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 772, 1069 |
| AjnI | CCWGG | 2 cut(s) | 32, 1118 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1360, 1392 |
| AluBI | AGCT | 5 cut(s) | 592, 769, 911, 1088, 1110 |
| AluI | AGCT | 5 cut(s) | 592, 769, 911, 1088, 1110 |
| Alw21I | GWGCWC | 1 cut(s) | 594 |
| Alw26I | GTCTC | 3 cut(s) | 443, 874, 1088 |
| AlwI | GGATC | 2 cut(s) | 522, 535 |
| Ama87I | CYCGRG | 1 cut(s) | 313 |
| AoxI | GGCC | 3 cut(s) | 65, 1277, 1412 |
| ApoI | RAATTY | 6 cut(s) | 224, 338, 757, 933, 1156, 1457 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 326 |
| AspLEI | GCGC | 3 cut(s) | 902, 1075, 1154 |
| AspS9I | GGNCC | 1 cut(s) | 207 |
| AsuHPI | GGTGA | 3 cut(s) | 621, 1325, 1465 |
| AsuII | TTCGAA | 1 cut(s) | 1050 |
| AsuNHI | GCTAGC | 1 cut(s) | 1088 |
| AvaI | CYCGRG | 1 cut(s) | 313 |
| AvaII | GGWCC | 1 cut(s) | 207 |
| AxyI | CCTNAGG | 1 cut(s) | 1239 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1252, 1285 |
| BalI | TGGCCA | 1 cut(s) | 67 |
| BamHI | GGATCC | 1 cut(s) | 527 |
| BanII | GRGCYC | 2 cut(s) | 594, 613 |
| BbsI | GAAGAC | 2 cut(s) | 987, 1192 |
| Bbv12I | GWGCWC | 1 cut(s) | 594 |
| BccI | CCATC | 6 cut(s) | 58, 124, 203, 444, 1181, 1222 |
| BceAI | ACGGC | 1 cut(s) | 325 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 341, 375 |
| BciT130I | CCWGG | 2 cut(s) | 34, 1120 |
| BclI | TGATCA | 2 cut(s) | 333, 1230 |
| BcoDI | GTCTC | 3 cut(s) | 443, 874, 1088 |
| BfaI | CTAG | 4 cut(s) | 410, 1089, 1266, 1446 |
| BfoI | RGCGCY | 1 cut(s) | 1076 |
| BfuAI | ACCTGC | 1 cut(s) | 425 |
| BisI | GCNGC | 1 cut(s) | 1356 |
| BlpI | GCTNAGC | 1 cut(s) | 974 |
| BlsI | GCNGC | 1 cut(s) | 1357 |
| Bme1390I | CCNGG | 2 cut(s) | 34, 1120 |
| Bme18I | GGWCC | 1 cut(s) | 207 |
| BmeT110I | CYCGRG | 1 cut(s) | 313 |
| BmgT120I | GGNCC | 1 cut(s) | 207 |
| BmiI | GGNNCC | 3 cut(s) | 529, 610, 743 |
| BmrFI | CCNGG | 2 cut(s) | 34, 1120 |
| BmsI | GCATC | 2 cut(s) | 426, 819 |
| BmtI | GCTAGC | 1 cut(s) | 1092 |
| BpiI | GAAGAC | 2 cut(s) | 987, 1192 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1187, 1219, 1455, 1487 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 974 |
| Bpu14I | TTCGAA | 1 cut(s) | 1050 |
| BpuEI | CTTGAG | 4 cut(s) | 449, 608, 791, 1061 |
| Bsa29I | ATCGAT | 2 cut(s) | 53, 840 |
| BsaI | GGTCTC | 2 cut(s) | 443, 1088 |
| BsaJI | CCNNGG | 4 cut(s) | 604, 699, 1118, 1359 |
| BsaWI | WCCGGW | 1 cut(s) | 441 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1287, 1317, 1317, 1347 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 772, 1069 |
| Bse1I | ACTGG | 1 cut(s) | 1169 |
| Bse21I | CCTNAGG | 1 cut(s) | 1239 |
| Bse3DI | GCAATG | 1 cut(s) | 357 |
| BseBI | CCWGG | 2 cut(s) | 34, 1120 |
| BseCI | ATCGAT | 2 cut(s) | 53, 840 |
| BseDI | CCNNGG | 4 cut(s) | 604, 699, 1118, 1359 |
| BseGI | GGATG | 3 cut(s) | 455, 555, 1192 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 772, 1069 |
| BseMI | GCAATG | 1 cut(s) | 357 |
| BseNI | ACTGG | 1 cut(s) | 1169 |
| BseRI | GAGGAG | 1 cut(s) | 554 |
| Bsh1236I | CGCG | 1 cut(s) | 902 |
| Bsh1285I | CGRYCG | 1 cut(s) | 446 |
| BshFI | GGCC | 3 cut(s) | 67, 1279, 1414 |
| BshVI | ATCGAT | 2 cut(s) | 53, 840 |
| BsiEI | CGRYCG | 1 cut(s) | 446 |
| BsiHKAI | GWGCWC | 1 cut(s) | 594 |
| BsiHKCI | CYCGRG | 1 cut(s) | 313 |
| BsiSI | CCGG | 1 cut(s) | 442 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 772, 1069 |
| BsmAI | GTCTC | 3 cut(s) | 443, 874, 1088 |
| BsnI | GGCC | 3 cut(s) | 67, 1279, 1414 |
| Bso31I | GGTCTC | 2 cut(s) | 443, 1088 |
| BsoBI | CYCGRG | 1 cut(s) | 313 |
| Bsp119I | TTCGAA | 1 cut(s) | 1050 |
| Bsp1286I | GDGCHC | 2 cut(s) | 594, 613 |
| Bsp143I | GATC | 5 cut(s) | 54, 333, 527, 1017, 1230 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 974 |
| Bsp19I | CCATGG | 2 cut(s) | 699, 1359 |
| BspACI | CCGC | 3 cut(s) | 432, 902, 1356 |
| BspANI | GGCC | 3 cut(s) | 67, 1279, 1414 |
| BspDI | ATCGAT | 2 cut(s) | 53, 840 |
| BspFNI | CGCG | 1 cut(s) | 902 |
| BspHI | TCATGA | 2 cut(s) | 615, 1174 |
| BspLI | GGNNCC | 3 cut(s) | 529, 610, 743 |
| BspMI | ACCTGC | 1 cut(s) | 425 |
| BspOI | GCTAGC | 1 cut(s) | 1092 |
| BspPI | GGATC | 2 cut(s) | 522, 535 |
| BspT104I | TTCGAA | 1 cut(s) | 1050 |
| BspTNI | GGTCTC | 2 cut(s) | 443, 1088 |
| BsrDI | GCAATG | 1 cut(s) | 357 |
| BsrI | ACTGG | 1 cut(s) | 1169 |
| BssECI | CCNNGG | 4 cut(s) | 604, 699, 1118, 1359 |
| BssMI | GATC | 5 cut(s) | 54, 333, 527, 1017, 1230 |
| BssT1I | CCWWGG | 3 cut(s) | 604, 699, 1359 |
| Bst2UI | CCWGG | 2 cut(s) | 34, 1120 |
| Bst6I | CTCTTC | 3 cut(s) | 641, 1186, 1210 |
| BstBI | TTCGAA | 1 cut(s) | 1050 |
| BstC8I | GCNNGC | 1 cut(s) | 1090 |
| BstDEI | CTNAG | 4 cut(s) | 277, 974, 1209, 1239 |
| BstDSI | CCRYGG | 2 cut(s) | 699, 1359 |
| BstF5I | GGATG | 3 cut(s) | 455, 555, 1192 |
| BstFNI | CGCG | 1 cut(s) | 902 |
| BstH2I | RGCGCY | 1 cut(s) | 1076 |
| BstHHI | GCGC | 3 cut(s) | 902, 1075, 1154 |
| BstKTI | GATC | 5 cut(s) | 57, 336, 530, 1020, 1233 |
| BstMAI | GTCTC | 3 cut(s) | 443, 874, 1088 |
| BstMBI | GATC | 5 cut(s) | 54, 333, 527, 1017, 1230 |
| BstMCI | CGRYCG | 1 cut(s) | 446 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 176, 908, 1041 |
| BstNI | CCWGG | 2 cut(s) | 34, 1120 |
| BstSCI | CCNGG | 2 cut(s) | 32, 1118 |
| BstUI | CGCG | 1 cut(s) | 902 |
| BstV2I | GAAGAC | 2 cut(s) | 987, 1192 |
| BstX2I | RGATCY | 1 cut(s) | 527 |
| BstYI | RGATCY | 1 cut(s) | 527 |
| Bsu15I | ATCGAT | 2 cut(s) | 53, 840 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1239 |
| BsuRI | GGCC | 3 cut(s) | 67, 1279, 1414 |
| BsuTUI | ATCGAT | 2 cut(s) | 53, 840 |
| BtgI | CCRYGG | 2 cut(s) | 699, 1359 |
| BtgZI | GCGATG | 1 cut(s) | 387 |
| BtsCI | GGATG | 3 cut(s) | 455, 555, 1192 |
| BtsIMutI | CAGTG | 1 cut(s) | 1143 |
| BveI | ACCTGC | 1 cut(s) | 425 |
| Cac8I | GCNNGC | 1 cut(s) | 1090 |
| CciI | TCATGA | 2 cut(s) | 615, 1174 |
| CfoI | GCGC | 3 cut(s) | 902, 1075, 1154 |
| Cfr13I | GGNCC | 1 cut(s) | 207 |
| ClaI | ATCGAT | 2 cut(s) | 53, 840 |
| Csp6I | GTAC | 1 cut(s) | 1141 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 797, 832 |
| CviAII | CATG | 6 cut(s) | 79, 616, 700, 802, 1175, 1360 |
| CviQI | GTAC | 1 cut(s) | 1141 |
| DdeI | CTNAG | 4 cut(s) | 277, 974, 1209, 1239 |
| DpnI | GATC | 5 cut(s) | 56, 335, 529, 1019, 1232 |
| DpnII | GATC | 5 cut(s) | 54, 333, 527, 1017, 1230 |
| EaeI | YGGCCR | 1 cut(s) | 65 |
| Eam1104I | CTCTTC | 3 cut(s) | 641, 1186, 1210 |
| EarI | CTCTTC | 3 cut(s) | 641, 1186, 1210 |
| Ecl136II | GAGCTC | 1 cut(s) | 592 |
| Eco130I | CCWWGG | 3 cut(s) | 604, 699, 1359 |
| Eco147I | AGGCCT | 1 cut(s) | 1279 |
| Eco24I | GRGCYC | 2 cut(s) | 594, 613 |
| Eco31I | GGTCTC | 2 cut(s) | 443, 1088 |
| Eco47I | GGWCC | 1 cut(s) | 207 |
| Eco53kI | GAGCTC | 1 cut(s) | 592 |
| Eco81I | CCTNAGG | 1 cut(s) | 1239 |
| Eco88I | CYCGRG | 1 cut(s) | 313 |
| EcoICRI | GAGCTC | 1 cut(s) | 592 |
| EcoRII | CCWGG | 2 cut(s) | 32, 1118 |
| EcoT14I | CCWWGG | 3 cut(s) | 604, 699, 1359 |
| EcoT38I | GRGCYC | 2 cut(s) | 594, 613 |
| ErhI | CCWWGG | 3 cut(s) | 604, 699, 1359 |
| FaeI | CATG | 6 cut(s) | 82, 619, 703, 805, 1178, 1363 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 249, 281, 285, 317, 458, 490 |
| FatI | CATG | 6 cut(s) | 78, 615, 699, 801, 1174, 1359 |
| FauI | CCCGC | 2 cut(s) | 439, 895 |
| FauNDI | CATATG | 1 cut(s) | 92 |
| FbaI | TGATCA | 2 cut(s) | 333, 1230 |
| Fnu4HI | GCNGC | 1 cut(s) | 1356 |
| FokI | GGATG | 3 cut(s) | 462, 562, 1199 |
| FriOI | GRGCYC | 2 cut(s) | 594, 613 |
| Fsp4HI | GCNGC | 1 cut(s) | 1356 |
| FspBI | CTAG | 4 cut(s) | 410, 1089, 1266, 1446 |
| GlaI | GCGC | 3 cut(s) | 901, 1074, 1153 |
| GluI | GCNGC | 1 cut(s) | 1356 |
| HaeII | RGCGCY | 1 cut(s) | 1076 |
| HaeIII | GGCC | 3 cut(s) | 67, 1279, 1414 |
| HapII | CCGG | 1 cut(s) | 442 |
| HhaI | GCGC | 3 cut(s) | 902, 1075, 1154 |
| Hin1II | CATG | 6 cut(s) | 82, 619, 703, 805, 1178, 1363 |
| Hin6I | GCGC | 3 cut(s) | 900, 1073, 1152 |
| HinP1I | GCGC | 3 cut(s) | 900, 1073, 1152 |
| HincII | GTYRAC | 1 cut(s) | 1404 |
| HindII | GTYRAC | 1 cut(s) | 1404 |
| HinfI | GANTC | 4 cut(s) | 37, 353, 583, 1133 |
| HpaI | GTTAAC | 1 cut(s) | 1404 |
| HpaII | CCGG | 1 cut(s) | 442 |
| HphI | GGTGA | 3 cut(s) | 621, 1325, 1465 |
| Hpy166II | GTNNAC | 4 cut(s) | 874, 1141, 1348, 1404 |
| Hpy188I | TCNGA | 2 cut(s) | 756, 1000 |
| Hpy8I | GTNNAC | 4 cut(s) | 874, 1141, 1348, 1404 |
| HpyAV | CCTTC | 7 cut(s) | 84, 311, 636, 936, 1034, 1336, 1443 |
| HpyCH4IV | ACGT | 2 cut(s) | 705, 969 |
| HpyCH4V | TGCA | 5 cut(s) | 179, 417, 569, 710, 1010 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 176, 908, 1041 |
| HpyF3I | CTNAG | 4 cut(s) | 277, 974, 1209, 1239 |
| HpySE526I | ACGT | 2 cut(s) | 705, 969 |
| Hsp92II | CATG | 6 cut(s) | 82, 619, 703, 805, 1178, 1363 |
| HspAI | GCGC | 3 cut(s) | 900, 1073, 1152 |
| Ksp22I | TGATCA | 2 cut(s) | 333, 1230 |
| KspAI | GTTAAC | 1 cut(s) | 1404 |
| Kzo9I | GATC | 5 cut(s) | 54, 333, 527, 1017, 1230 |
| LmnI | GCTCC | 3 cut(s) | 597, 608, 747 |
| LweI | GCATC | 2 cut(s) | 426, 819 |
| MaeI | CTAG | 4 cut(s) | 410, 1089, 1266, 1446 |
| MaeII | ACGT | 2 cut(s) | 705, 969 |
| MaeIII | GTNAC | 3 cut(s) | 305, 394, 946 |
| MalI | GATC | 5 cut(s) | 56, 335, 529, 1019, 1232 |
| MboI | GATC | 5 cut(s) | 54, 333, 527, 1017, 1230 |
| MboII | GAAGA | 9 cut(s) | 90, 305, 628, 987, 1163, 1192, 1197, 1203, 1377 |
| MfeI | CAATTG | 3 cut(s) | 677, 1226, 1482 |
| MflI | RGATCY | 1 cut(s) | 527 |
| MhlI | GDGCHC | 2 cut(s) | 594, 613 |
| MlsI | TGGCCA | 1 cut(s) | 67 |
| MluNI | TGGCCA | 1 cut(s) | 67 |
| MlyI | GAGTC | 1 cut(s) | 347 |
| MmeI | TCCRAC | 2 cut(s) | 977, 1434 |
| Mox20I | TGGCCA | 1 cut(s) | 67 |
| MroXI | GAANNNNTTC | 1 cut(s) | 326 |
| MscI | TGGCCA | 1 cut(s) | 67 |
| MseI | TTAA | 5 cut(s) | 248, 381, 1112, 1403, 1489 |
| MslI | CAYNNNNRTG | 3 cut(s) | 698, 1103, 1179 |
| Msp20I | TGGCCA | 1 cut(s) | 67 |
| MspI | CCGG | 1 cut(s) | 442 |
| MspR9I | CCNGG | 2 cut(s) | 34, 1120 |
| MunI | CAATTG | 3 cut(s) | 677, 1226, 1482 |
| MvaI | CCWGG | 2 cut(s) | 34, 1120 |
| MvnI | CGCG | 1 cut(s) | 902 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 176, 908, 1041 |
| NcoI | CCATGG | 2 cut(s) | 699, 1359 |
| NdeI | CATATG | 1 cut(s) | 92 |
| NdeII | GATC | 5 cut(s) | 54, 333, 527, 1017, 1230 |
| NheI | GCTAGC | 1 cut(s) | 1088 |
| NlaIII | CATG | 6 cut(s) | 82, 619, 703, 805, 1178, 1363 |
| NlaIV | GGNNCC | 3 cut(s) | 529, 610, 743 |
| NmuCI | GTSAC | 1 cut(s) | 394 |
| NspV | TTCGAA | 1 cut(s) | 1050 |
| PaeR7I | CTCGAG | 1 cut(s) | 313 |
| PagI | TCATGA | 2 cut(s) | 615, 1174 |
| PceI | AGGCCT | 1 cut(s) | 1279 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 975 |
| PdmI | GAANNNNTTC | 1 cut(s) | 326 |
| PfeI | GAWTC | 3 cut(s) | 37, 583, 1133 |
| PfoI | TCCNGGA | 1 cut(s) | 32 |
| PkrI | GCNGC | 1 cut(s) | 1357 |
| PleI | GAGTC | 1 cut(s) | 347 |
| PpsI | GAGTC | 1 cut(s) | 347 |
| Psp124BI | GAGCTC | 1 cut(s) | 594 |
| Psp6I | CCWGG | 2 cut(s) | 32, 1118 |
| PspGI | CCWGG | 2 cut(s) | 32, 1118 |
| PspN4I | GGNNCC | 3 cut(s) | 529, 610, 743 |
| PspPI | GGNCC | 1 cut(s) | 207 |
| PspXI | VCTCGAGB | 1 cut(s) | 313 |
| PsuI | RGATCY | 1 cut(s) | 527 |
| RsaI | GTAC | 1 cut(s) | 1142 |
| RsaNI | GTAC | 1 cut(s) | 1141 |
| RseI | CAYNNNNRTG | 3 cut(s) | 698, 1103, 1179 |
| SacI | GAGCTC | 1 cut(s) | 594 |
| SaqAI | TTAA | 5 cut(s) | 248, 381, 1112, 1403, 1489 |
| SatI | GCNGC | 1 cut(s) | 1356 |
| Sau3AI | GATC | 5 cut(s) | 54, 333, 527, 1017, 1230 |
| Sau96I | GGNCC | 1 cut(s) | 207 |
| SchI | GAGTC | 1 cut(s) | 347 |
| ScrFI | CCNGG | 2 cut(s) | 34, 1120 |
| SduI | GDGCHC | 2 cut(s) | 594, 613 |
| SfaNI | GCATC | 2 cut(s) | 426, 819 |
| Sfr274I | CTCGAG | 1 cut(s) | 313 |
| SfuI | TTCGAA | 1 cut(s) | 1050 |
| SinI | GGWCC | 1 cut(s) | 207 |
| SlaI | CTCGAG | 1 cut(s) | 313 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 698, 1103, 1179 |
| SmlI | CTYRAG | 5 cut(s) | 313, 464, 587, 770, 1076 |
| SmoI | CTYRAG | 5 cut(s) | 313, 464, 587, 770, 1076 |
| SseBI | AGGCCT | 1 cut(s) | 1279 |
| SsiI | CCGC | 3 cut(s) | 432, 902, 1356 |
| SspMI | CTAG | 4 cut(s) | 410, 1089, 1266, 1446 |
| SstI | GAGCTC | 1 cut(s) | 594 |
| StuI | AGGCCT | 1 cut(s) | 1279 |
| StyD4I | CCNGG | 2 cut(s) | 32, 1118 |
| StyI | CCWWGG | 3 cut(s) | 604, 699, 1359 |
| TaiI | ACGT | 2 cut(s) | 708, 972 |
| TaqI | TCGA | 5 cut(s) | 53, 314, 351, 840, 1050 |
| TauI | GCSGC | 1 cut(s) | 1358 |
| TfiI | GAWTC | 3 cut(s) | 37, 583, 1133 |
| Tru1I | TTAA | 5 cut(s) | 248, 381, 1112, 1403, 1489 |
| Tru9I | TTAA | 5 cut(s) | 248, 381, 1112, 1403, 1489 |
| TscAI | CASTG | 1 cut(s) | 1143 |
| TseFI | GTSAC | 1 cut(s) | 394 |
| Tsp45I | GTSAC | 1 cut(s) | 394 |
| TspDTI | ATGAA | 9 cut(s) | 96, 277, 438, 530, 632, 750, 902, 927, 1163 |
| TspGWI | ACGGA | 1 cut(s) | 1158 |
| TspRI | CASTG | 1 cut(s) | 1143 |
| VpaK11BI | GGWCC | 1 cut(s) | 207 |
| XapI | RAATTY | 6 cut(s) | 224, 338, 757, 933, 1156, 1457 |
| XhoI | CTCGAG | 1 cut(s) | 313 |
| XmnI | GAANNNNTTC | 1 cut(s) | 326 |
| XspI | CTAG | 4 cut(s) | 410, 1089, 1266, 1446 |