Rorug01G0362700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015143
Physical Location & Seq
Reverse (-)
47795979 .. 47796677
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0362700.1

Sequence Viewer

Length: 699 bp
ATGTGCACGTTGGACAAGAAAGGCGAGGTCTTCATCCTCACGCTAACTGGGCCGGGTGAGCATAGGCTCAACCCAACTCTACTGGACGCAATCCAATCCGCTTTAAACACCGTCCGAGCCGCCGCCACGTCATCCTCCGTAGCCCTGATCACCACCGCACACGGCAAATTCTTCTCCAACGGCTACGATCTGGACTGGGCCGGGTCGGACAAAGCCCGAGGCGAGCTCATGACCTCGAAGCTCCGGGCGGTCGTGGCCGACTTCATCTCCCTCCCGTTGCCGACCATCGCCGCAGTCACCGGCCACGCCTCCGCCGCCGGCTTCATCCTCGCGCGGTGCCACGACTACGTTCTGATGAGGAAGGACAGGGGGTTCGTCTATATGAGCGAGATGGACATCGCGCTGGTGATTCCAGCTTGGTTTCACGCGCTGATTAAGAACAAGGTCGGATCGGCGGCGGCGCGGCGCGATTTGATGCTCAGAGCGGATAAGATGACGGCGGCGGTGGCCGTGGAGAAGGGGATTGTTGACTCGGCGGTTAATGGCGCGGAGGAGACTGTTGAGGCGGCGGTTAGATTGGGGGCGGAGTTGGTTAGGAGGAAATGGAAGGGACACGTGTACGCTCAGATTCGCGTTGACTTGATGTCGGAGGTTTTGGCGGAAATCCGAAACCATGACAGTACAAGATCCCGTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.18

Weight (kDa)

9.12

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 7 - 218 5.1e-23 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40390
fragaria_vesca FvH4_7g25370
malus_domestica MD01G1159800.v1.1
prunus_persica Prupe.2G257800_v2.0.a1
pyrus_communis pycom01g17620
rosa_chinensis RchiOBHm_Chr1g0371291
rosa_laevigata RLG00000026973
rosa_multiflora Rmu_sc0016653.1_g000001
rosa_roxburghii Rroxscaffold_4G00285810
rosa_rugosa Rorug01G0362700 Rorug01G0362800
rosa_samantha Rh1AG372800 Rh1BG336300 Rh1CG349700 Rh1DG367400
rosa_wichuraiana Rw1G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 485
AccII CGCG 8 cut(s) 332, 334, 401, 428, 463, 468, 548, 633
AclWI GGATC 2 cut(s) 457, 681
AcoI YGGCCR 3 cut(s) 255, 301, 507
AcsI RAATTY 1 cut(s) 167
AcvI CACGTG 1 cut(s) 616
AfaI GTAC 2 cut(s) 620, 682
AflIII ACRYGT 2 cut(s) 613, 615
AhdI GACNNNNNGTC 1 cut(s) 643
AjiI CACGTC 1 cut(s) 129
AloI GAACNNNNNNTCC 2 cut(s) 356, 388
AluBI AGCT 3 cut(s) 226, 241, 416
AluI AGCT 3 cut(s) 226, 241, 416
Alw21I GWGCWC 2 cut(s) 8, 228
Alw26I GTCTC 1 cut(s) 548
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 2 cut(s) 457, 681
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 5 cut(s) 50, 198, 255, 301, 507
ApaLI GTGCAC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 6 cut(s) 334, 403, 430, 463, 468, 548
AspS9I GGNCC 2 cut(s) 50, 198
AsuC2I CCSGG 3 cut(s) 54, 202, 245
AsuHPI GGTGA 4 cut(s) 68, 142, 289, 418
AvaI CYCGRG 1 cut(s) 216
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 228
BbrPI CACGTG 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 22
Bbv12I GWGCWC 2 cut(s) 8, 228
BccI CCATC 2 cut(s) 293, 385
BceAI ACGGC 4 cut(s) 178, 196, 494, 513
BclI TGATCA 1 cut(s) 147
BcnI CCSGG 3 cut(s) 54, 202, 245
BcoDI GTCTC 1 cut(s) 548
BfmI CTRYAG 1 cut(s) 695
BisI GCNGC 9 cut(s) 120, 123, 291, 315, 456, 459, 464, 501, 567
BlsI GCNGC 9 cut(s) 121, 124, 292, 316, 457, 460, 465, 502, 568
Bme1390I CCNGG 3 cut(s) 54, 202, 245
BmeRI GACNNNNNGTC 1 cut(s) 643
BmeT110I CYCGRG 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 50, 198
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 3 cut(s) 54, 202, 245
BmrI ACTGGG 2 cut(s) 57, 205
BmsI GCATC 1 cut(s) 465
BmuI ACTGGG 2 cut(s) 57, 205
BpiI GAAGAC 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpuMI CCSGG 3 cut(s) 54, 202, 245
BsaAI YACGTR 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 217, 510
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bse118I RCCGGY 2 cut(s) 299, 317
Bse1I ACTGG 3 cut(s) 52, 87, 200
Bse8I GATNNNNATC 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 217, 510
BseGI GGATG 3 cut(s) 33, 131, 324
BseJI GATNNNNATC 1 cut(s) 395
BseMII CTCAG 2 cut(s) 493, 638
BseNI ACTGG 3 cut(s) 52, 87, 200
BseRI GAGGAG 1 cut(s) 566
BseSI GKGCMC 1 cut(s) 8
Bsh1236I CGCG 8 cut(s) 332, 334, 401, 428, 463, 468, 548, 633
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 5 cut(s) 52, 200, 257, 303, 509
BshNI GGYRCC 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 2 cut(s) 8, 228
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 5 cut(s) 53, 201, 244, 300, 318
BslFI GGGAC 1 cut(s) 624
BsmAI GTCTC 1 cut(s) 548
BsmFI GGGAC 1 cut(s) 624
BsnI GGCC 5 cut(s) 52, 200, 257, 303, 509
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 8, 228
Bsp143I GATC 4 cut(s) 147, 187, 449, 686
BspANI GGCC 5 cut(s) 52, 200, 257, 303, 509
BspCNI CTCAG 2 cut(s) 492, 637
BspFNI CGCG 8 cut(s) 332, 334, 401, 428, 463, 468, 548, 633
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 338
BspPI GGATC 2 cut(s) 457, 681
BspT107I GGYRCC 1 cut(s) 336
BsrBI CCGCTC 1 cut(s) 485
BsrFI RCCGGY 2 cut(s) 299, 317
BsrI ACTGG 3 cut(s) 52, 87, 200
BssAI RCCGGY 2 cut(s) 299, 317
BssECI CCNNGG 2 cut(s) 217, 510
BssMI GATC 4 cut(s) 147, 187, 449, 686
Bst4CI ACNGT 3 cut(s) 112, 559, 680
BstBAI YACGTR 1 cut(s) 616
BstC8I GCNNGC 2 cut(s) 224, 319
BstDEI CTNAG 2 cut(s) 479, 624
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 3 cut(s) 33, 131, 324
BstFNI CGCG 8 cut(s) 332, 334, 401, 428, 463, 468, 548, 633
BstHHI GCGC 6 cut(s) 334, 403, 430, 463, 468, 548
BstKTI GATC 4 cut(s) 150, 190, 452, 689
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 4 cut(s) 147, 187, 449, 686
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 5 cut(s) 49, 58, 254, 314, 506
BstSCI CCNGG 3 cut(s) 52, 200, 243
BstSFI CTRYAG 1 cut(s) 695
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 8 cut(s) 332, 334, 401, 428, 463, 468, 548, 633
BstV2I GAAGAC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
BsuRI GGCC 5 cut(s) 52, 200, 257, 303, 509
BtgI CCRYGG 1 cut(s) 510
BtgZI GCGATG 2 cut(s) 271, 382
BtrI CACGTC 1 cut(s) 129
BtsCI GGATG 3 cut(s) 33, 131, 324
Cac8I GCNNGC 2 cut(s) 224, 319
CciI TCATGA 1 cut(s) 228
CfoI GCGC 6 cut(s) 334, 403, 430, 463, 468, 548
Cfr10I RCCGGY 2 cut(s) 299, 317
Cfr13I GGNCC 2 cut(s) 50, 198
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 619, 681
CviAII CATG 2 cut(s) 229, 674
CviQI GTAC 2 cut(s) 619, 681
DdeI CTNAG 2 cut(s) 479, 624
DpnI GATC 4 cut(s) 149, 189, 451, 688
DpnII GATC 4 cut(s) 147, 187, 449, 686
DraI TTTAAA 1 cut(s) 105
DriI GACNNNNNGTC 1 cut(s) 643
EaeI YGGCCR 3 cut(s) 255, 301, 507
Eam1105I GACNNNNNGTC 1 cut(s) 643
EciI GGCGGA 3 cut(s) 301, 599, 674
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 226
Eco72I CACGTG 1 cut(s) 616
Eco88I CYCGRG 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 2 cut(s) 232, 677
FaiI YATR 5 cut(s) 63, 230, 381, 383, 675
FaqI GGGAC 1 cut(s) 624
FatI CATG 2 cut(s) 228, 673
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 9 cut(s) 120, 123, 291, 315, 456, 459, 464, 501, 567
FokI GGATG 3 cut(s) 20, 118, 311
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 9 cut(s) 120, 123, 291, 315, 456, 459, 464, 501, 567
GlaI GCGC 6 cut(s) 333, 402, 429, 462, 467, 547
GluI GCNGC 9 cut(s) 120, 123, 291, 315, 456, 459, 464, 501, 567
HaeIII GGCC 5 cut(s) 52, 200, 257, 303, 509
HapII CCGG 5 cut(s) 53, 201, 244, 300, 318
HgaI GACGC 1 cut(s) 95
HhaI GCGC 6 cut(s) 334, 403, 430, 463, 468, 548
Hin1II CATG 2 cut(s) 232, 677
Hin6I GCGC 6 cut(s) 332, 401, 428, 461, 466, 546
HinP1I GCGC 6 cut(s) 332, 401, 428, 461, 466, 546
HincII GTYRAC 2 cut(s) 529, 637
HindII GTYRAC 2 cut(s) 529, 637
HinfI GANTC 3 cut(s) 409, 530, 628
HpaII CCGG 5 cut(s) 53, 201, 244, 300, 318
HphI GGTGA 4 cut(s) 68, 142, 289, 418
Hpy166II GTNNAC 4 cut(s) 6, 529, 619, 637
Hpy188I TCNGA 8 cut(s) 116, 208, 354, 449, 482, 627, 649, 668
Hpy188III TCNNGA 2 cut(s) 191, 229
Hpy8I GTNNAC 4 cut(s) 6, 529, 619, 637
HpyAV CCTTC 3 cut(s) 355, 511, 601
HpyCH4III ACNGT 3 cut(s) 112, 559, 680
HpyCH4IV ACGT 4 cut(s) 8, 128, 348, 615
HpyCH4V TGCA 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 58, 254, 314, 506
HpyF3I CTNAG 2 cut(s) 479, 624
HpySE526I ACGT 4 cut(s) 8, 128, 348, 615
Hsp92II CATG 2 cut(s) 232, 677
HspAI GCGC 6 cut(s) 332, 401, 428, 461, 466, 546
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 4 cut(s) 147, 187, 449, 686
LmnI GCTCC 1 cut(s) 246
LweI GCATC 1 cut(s) 465
MaeII ACGT 4 cut(s) 8, 128, 348, 615
MaeIII GTNAC 1 cut(s) 295
MalI GATC 4 cut(s) 149, 189, 451, 688
MbiI CCGCTC 1 cut(s) 485
MboI GATC 4 cut(s) 147, 187, 449, 686
MboII GAAGA 2 cut(s) 22, 163
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 2 cut(s) 8, 228
MluCI AATT 1 cut(s) 167
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 4 cut(s) 186, 201, 427, 627
MroNI GCCGGC 1 cut(s) 317
MseI TTAA 3 cut(s) 104, 435, 540
MspI CCGG 5 cut(s) 53, 201, 244, 300, 318
MspR9I CCNGG 3 cut(s) 54, 202, 245
MteI GCGCNGCGC 1 cut(s) 464
MvnI CGCG 8 cut(s) 332, 334, 401, 428, 463, 468, 548, 633
MwoI GCNNNNNNNGC 5 cut(s) 49, 58, 254, 314, 506
NaeI GCCGGC 1 cut(s) 319
NciI CCSGG 3 cut(s) 54, 202, 245
NdeII GATC 4 cut(s) 147, 187, 449, 686
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 2 cut(s) 232, 677
NlaIV GGNNCC 1 cut(s) 338
NmeAIII GCCGAG 1 cut(s) 512
NmuCI GTSAC 1 cut(s) 295
PagI TCATGA 1 cut(s) 228
PdiI GCCGGC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 409, 628
PkrI GCNGC 9 cut(s) 121, 124, 292, 316, 457, 460, 465, 502, 568
PleI GAGTC 1 cut(s) 524
PmaCI CACGTG 1 cut(s) 616
PmlI CACGTG 1 cut(s) 616
PpsI GAGTC 1 cut(s) 524
Ppu21I YACGTR 1 cut(s) 616
Psp124BI GAGCTC 1 cut(s) 228
PspCI CACGTG 1 cut(s) 616
PspN4I GGNNCC 1 cut(s) 338
PspPI GGNCC 2 cut(s) 50, 198
PsuI RGATCY 1 cut(s) 686
RsaI GTAC 2 cut(s) 620, 682
RsaNI GTAC 2 cut(s) 619, 681
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 3 cut(s) 104, 435, 540
SatI GCNGC 9 cut(s) 120, 123, 291, 315, 456, 459, 464, 501, 567
Sau3AI GATC 4 cut(s) 147, 187, 449, 686
Sau96I GGNCC 2 cut(s) 50, 198
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 3 cut(s) 54, 202, 245
SduI GDGCHC 2 cut(s) 8, 228
SfaNI GCATC 1 cut(s) 465
SfcI CTRYAG 1 cut(s) 695
Sse9I AATT 1 cut(s) 167
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 3 cut(s) 52, 200, 243
TaaI ACNGT 3 cut(s) 112, 559, 680
TaiI ACGT 4 cut(s) 11, 131, 351, 618
TaqI TCGA 1 cut(s) 236
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 680
TauI GCSGC 9 cut(s) 122, 125, 293, 317, 458, 461, 466, 503, 569
TfiI GAWTC 2 cut(s) 409, 628
Tru1I TTAA 3 cut(s) 104, 435, 540
Tru9I TTAA 3 cut(s) 104, 435, 540
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 22, 253, 313
TspGWI ACGGA 1 cut(s) 127
VneI GTGCAC 1 cut(s) 4
XapI RAATTY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.