RLG00000026973

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015143
Physical Location & Seq
Reverse (-)
7337212 .. 7339438
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026973

Sequence Viewer

Length: 1503 bp
ATGGCTTCTTATTCTGGATTTCCTGACATATTTTCGTGGATTCAAAGCCTTCCTCCAATCTCTCAATGGCCTCCAAAAATTTCCAATGTCTCCATATCCATATGTTCTTCTCCAAGTTCATCTCAACCATCCCTCAAACTCTCCATATCTATAAACCCTCAAACCGCAACTCTCTCTTTCTCCATAATTGCAGATTTCAATCTCCCTATCGCGCTTTGGACCTCGAAACACTTCAAATTCAGCCCCAATAACATCAAGCCAATAAATCAAGAAACCATTTCGAGTCTCCTAGTCAATGTCATTGAAGATGTTCTTCACTATGGCTCAAACAAGAATAACTTCTTGATCAAGTTTCTCAAGCTAGACTCCATTGCCAACTTGGAAGAAGTCTTCAACCTCTCATTTCTCGCTCTTTTGTTCCTTGTTTGCATCTACGAAGCCCCTGCAGGCCTTCGCTCCGGATGTCTCAACATTCTCAAGAATTACTTGGCAGATTGCTGTTCAAGACAGGCTTCGAAGTCGCTGATGAAGCTTTTAGGATCAAATTTGGAAGAGGAATGGATGCGGTCCATGAACCTTGCGATTACCAATTGGATTGTGGAGCTCCAAGCAGAACAGAGAGCCCTTAAAACACCATCACCACTTTTCTCTTACGCAATTTCGACGTTTGGGTTGTGGAAAGTGCAGTTGTATTGTCCTGTCATAGCCATGGACATTGAAAAATCTAGCAGCCCTTCTTGTGGTGATGAGAGACTGCAGTTCTCTCTGAATTACCACCAGCTTGAGGGTGTTCTTCAGTTCAATTACAAAGTCATAGTCAAAGAGAGGTGGATTGATGTGATGCTAAACATTGACAACATAAGGTGTGATATTGTTAGGCTTGTGAATGAGACTCTAATGAATGAACAAGGCGCCGGGACAGGTGAAAAGCATTTCCCGTCAAGAATTTCATTACAAATTACTCCAACTCGACAAACCAATGTGGTGAGTGTTTCAGTGAGCAAGTCTTCCGAGAACCCTACAAGAGAGATTGGCAAAGAAAAGGGCATAGAGGGTTCATTTGAACCCCCAAACCCTTACTTGGCGCTCAAGGTATCGGCTGGAGAGACCATAACAATGAGCTTGAAGCCATGGAAGTTCGAGGAATCTGTGTACGGATATAGTGCAAACTTGAATTGGTTTCTCCATGATAGTGTGGATGGTAGGGAGGTCTTCTCTTCCAAGCCATCAAAGTTTCAGCTGATTAACCCCAAGGCTTGGTTCAAAGACAGGTACTCTAGTGCTTATAGGCCTTTCACTAGGCAAGGAGGAGTCATTTTTGCTGGTGATGAGTACGGAGAGGGTGTGATGTGGAAGGTGGACAAAGCTGCCCTCGGAAAGACTATGGAATGGGAAATTAGAGGGTGGATTTGTTTAACTTATTGGCCTAACAAACATAAAACATTTTATACTGAGACTAGGAGGCTGGAATTTAGAGAAATCCTCAAACTTACAATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

501

Amino Acids

56.74

Weight (kDa)

8.41

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40390
fragaria_vesca FvH4_7g25370
malus_domestica MD01G1159800.v1.1
prunus_persica Prupe.2G257800_v2.0.a1
pyrus_communis pycom01g17620
rosa_chinensis RchiOBHm_Chr1g0371291
rosa_laevigata RLG00000026973
rosa_multiflora Rmu_sc0016653.1_g000001
rosa_roxburghii Rroxscaffold_4G00285810
rosa_rugosa Rorug01G0362700 Rorug01G0362800
rosa_samantha Rh1AG372800 Rh1BG336300 Rh1CG349700 Rh1DG367400
rosa_wichuraiana Rw1G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 911
AccB7I CCANNNNNTGG 1 cut(s) 1257
AccII CGCG 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 458
AciI CCGC 2 cut(s) 165, 565
AclWI GGATC 1 cut(s) 547
AcsI RAATTY 5 cut(s) 78, 236, 544, 945, 1469
AcuI CTGAAG 1 cut(s) 779
AcyI GRCGYC 1 cut(s) 912
AfaI GTAC 3 cut(s) 1154, 1274, 1334
AfiI CCNNNNNNNGG 4 cut(s) 740, 784, 1081, 1257
AjuI GAANNNNNNNTTGG 2 cut(s) 1244, 1276
AluBI AGCT 7 cut(s) 361, 532, 604, 781, 1122, 1240, 1367
AluI AGCT 7 cut(s) 361, 532, 604, 781, 1122, 1240, 1367
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 7 cut(s) 94, 290, 470, 745, 884, 1100, 1448
AlwI GGATC 1 cut(s) 547
Aor13HI TCCGGA 1 cut(s) 458
AoxI GGCC 4 cut(s) 68, 448, 1289, 1424
ApeKI GCWGC 2 cut(s) 729, 1367
ApoI RAATTY 5 cut(s) 78, 236, 544, 945, 1469
ArsI GACNNNNNNTTYG 2 cut(s) 801, 833
Asp700I GAANNNNTTC 3 cut(s) 230, 309, 338
AspLEI GCGC 3 cut(s) 214, 914, 1087
AspS9I GGNCC 2 cut(s) 219, 567
AsuC2I CCSGG 1 cut(s) 916
AsuHPI GGTGA 5 cut(s) 630, 755, 935, 997, 1337
AsuII TTCGAA 1 cut(s) 515
AvaII GGWCC 2 cut(s) 219, 567
BaeI ACNNNNGTAYC 2 cut(s) 1264, 1297
BanI GGYRCC 1 cut(s) 911
BanII GRGCYC 2 cut(s) 606, 625
BbsI GAAGAC 3 cut(s) 382, 999, 1204
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 741, 1354
BccI CCATC 4 cut(s) 136, 643, 1193, 1234
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BclI TGATCA 1 cut(s) 345
BcnI CCSGG 1 cut(s) 916
BcoDI GTCTC 7 cut(s) 94, 290, 470, 745, 884, 1100, 1448
BfaI CTAG 6 cut(s) 290, 362, 726, 1278, 1299, 1458
BfmI CTRYAG 2 cut(s) 444, 755
BfoI RGCGCY 2 cut(s) 915, 1088
BisI GCNGC 2 cut(s) 730, 1368
BlsI GCNGC 2 cut(s) 731, 1369
Bme1390I CCNGG 1 cut(s) 916
Bme18I GGWCC 2 cut(s) 219, 567
BmgT120I GGNCC 2 cut(s) 219, 567
BmiI GGNNCC 1 cut(s) 913
BmrFI CCNGG 1 cut(s) 916
BmsI GCATC 3 cut(s) 438, 552, 831
BpiI GAAGAC 3 cut(s) 382, 999, 1204
BplI GAGNNNNNCTC 4 cut(s) 1199, 1231, 1467, 1499
BpmI CTGGAG 1 cut(s) 1122
Bpu14I TTCGAA 1 cut(s) 515
BpuEI CTTGAG 4 cut(s) 341, 461, 803, 1073
BpuMI CCSGG 1 cut(s) 916
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 912
BsaI GGTCTC 1 cut(s) 1100
BsaJI CCNNGG 4 cut(s) 708, 1130, 1251, 1372
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 1329, 1359
Bsc4I CCNNNNNNNGG 4 cut(s) 740, 784, 1081, 1257
Bse3DI GCAATG 1 cut(s) 369
Bse8I GATNNNNATC 1 cut(s) 198
BseAI TCCGGA 1 cut(s) 458
BseDI CCNNGG 4 cut(s) 708, 1130, 1251, 1372
BseGI GGATG 4 cut(s) 128, 467, 567, 1204
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 4 cut(s) 740, 784, 1081, 1257
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 1443
BseRI GAGGAG 1 cut(s) 1323
BseXI GCAGC 2 cut(s) 741, 1354
BsgI GTGCAG 1 cut(s) 704
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 4 cut(s) 70, 450, 1291, 1426
BshNI GGYRCC 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 606
BsiSI CCGG 2 cut(s) 459, 915
BslFI GGGAC 1 cut(s) 931
BslI CCNNNNNNNGG 4 cut(s) 740, 784, 1081, 1257
BsmAI GTCTC 7 cut(s) 94, 290, 470, 745, 884, 1100, 1448
BsmFI GGGAC 1 cut(s) 931
BsnI GGCC 4 cut(s) 70, 450, 1291, 1426
Bso31I GGTCTC 1 cut(s) 1100
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 606, 625
Bsp13I TCCGGA 1 cut(s) 458
Bsp143I GATC 2 cut(s) 345, 539
Bsp19I CCATGG 2 cut(s) 708, 1130
BspACI CCGC 2 cut(s) 165, 565
BspANI GGCC 4 cut(s) 70, 450, 1291, 1426
BspCNI CTCAG 1 cut(s) 1444
BspEI TCCGGA 1 cut(s) 458
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 913
BspMAI CTGCAG 2 cut(s) 448, 759
BspPI GGATC 1 cut(s) 547
BspT104I TTCGAA 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 911
BspTNI GGTCTC 1 cut(s) 1100
BsrDI GCAATG 1 cut(s) 369
BssECI CCNNGG 4 cut(s) 708, 1130, 1251, 1372
BssMI GATC 2 cut(s) 345, 539
BssNI GRCGYC 1 cut(s) 912
BssT1I CCWWGG 3 cut(s) 708, 1130, 1251
Bst6I CTCTTC 2 cut(s) 546, 1222
BstACI GRCGYC 1 cut(s) 912
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 1 cut(s) 1452
BstDSI CCRYGG 2 cut(s) 708, 1130
BstF5I GGATG 4 cut(s) 128, 467, 567, 1204
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 2 cut(s) 915, 1088
BstHHI GCGC 3 cut(s) 214, 914, 1087
BstKTI GATC 2 cut(s) 348, 542
BstMAI GTCTC 7 cut(s) 94, 290, 470, 745, 884, 1100, 1448
BstMBI GATC 2 cut(s) 345, 539
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 914
BstSFI CTRYAG 2 cut(s) 444, 755
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 2 cut(s) 741, 1354
BstV2I GAAGAC 3 cut(s) 382, 999, 1204
BsuRI GGCC 4 cut(s) 70, 450, 1291, 1426
BtgI CCRYGG 2 cut(s) 708, 1130
BtsCI GGATG 4 cut(s) 128, 467, 567, 1204
BtsIMutI CAGTG 1 cut(s) 1002
Cac8I GCNNGC 1 cut(s) 448
CfoI GCGC 3 cut(s) 214, 914, 1087
Cfr13I GGNCC 2 cut(s) 219, 567
Csp6I GTAC 3 cut(s) 1153, 1273, 1333
CviAII CATG 4 cut(s) 571, 709, 1131, 1187
CviQI GTAC 3 cut(s) 1153, 1273, 1333
DdeI CTNAG 1 cut(s) 1452
DinI GGCGCC 1 cut(s) 913
DpnI GATC 2 cut(s) 347, 541
DpnII GATC 2 cut(s) 345, 539
Eam1104I CTCTTC 2 cut(s) 546, 1222
EarI CTCTTC 2 cut(s) 546, 1222
Ecl136II GAGCTC 1 cut(s) 604
Eco130I CCWWGG 3 cut(s) 708, 1130, 1251
Eco147I AGGCCT 2 cut(s) 450, 1291
Eco24I GRGCYC 2 cut(s) 606, 625
Eco31I GGTCTC 1 cut(s) 1100
Eco47I GGWCC 2 cut(s) 219, 567
Eco53kI GAGCTC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 779
EcoICRI GAGCTC 1 cut(s) 604
EcoT14I CCWWGG 3 cut(s) 708, 1130, 1251
EcoT38I GRGCYC 2 cut(s) 606, 625
EgeI GGCGCC 1 cut(s) 913
EheI GGCGCC 1 cut(s) 913
ErhI CCWWGG 3 cut(s) 708, 1130, 1251
FaeI CATG 4 cut(s) 574, 712, 1134, 1190
FalI AAGNNNNNCTT 8 cut(s) 297, 329, 323, 355, 470, 502, 496, 528
FaqI GGGAC 1 cut(s) 931
FatI CATG 4 cut(s) 570, 708, 1130, 1186
FauNDI CATATG 1 cut(s) 101
FbaI TGATCA 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 730, 1368
FokI GGATG 4 cut(s) 115, 474, 574, 1211
FriOI GRGCYC 2 cut(s) 606, 625
Fsp4HI GCNGC 2 cut(s) 730, 1368
FspBI CTAG 6 cut(s) 290, 362, 726, 1278, 1299, 1458
GlaI GCGC 3 cut(s) 213, 913, 1086
GluI GCNGC 2 cut(s) 730, 1368
GsuI CTGGAG 1 cut(s) 1122
HaeII RGCGCY 2 cut(s) 915, 1088
HaeIII GGCC 4 cut(s) 70, 450, 1291, 1426
HapII CCGG 2 cut(s) 459, 915
HhaI GCGC 3 cut(s) 214, 914, 1087
Hin1I GRCGYC 1 cut(s) 912
Hin1II CATG 4 cut(s) 574, 712, 1134, 1190
Hin6I GCGC 3 cut(s) 212, 912, 1085
HinP1I GCGC 3 cut(s) 212, 912, 1085
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 6 cut(s) 40, 283, 365, 892, 1145, 1311
HpaII CCGG 2 cut(s) 459, 915
HphI GGTGA 5 cut(s) 630, 755, 935, 997, 1337
Hpy166II GTNNAC 2 cut(s) 1153, 1360
Hpy188I TCNGA 3 cut(s) 768, 1012, 1376
Hpy188III TCNNGA 8 cut(s) 15, 23, 269, 343, 459, 478, 504, 942
Hpy8I GTNNAC 2 cut(s) 1153, 1360
Hpy99I CGWCG 1 cut(s) 667
HpyAV CCTTC 4 cut(s) 59, 461, 744, 1348
HpyCH4IV ACGT 1 cut(s) 665
HpyCH4V TGCA 6 cut(s) 191, 429, 446, 685, 757, 1166
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 1 cut(s) 1452
HpySE526I ACGT 1 cut(s) 665
Hsp92I GRCGYC 1 cut(s) 912
Hsp92II CATG 4 cut(s) 574, 712, 1134, 1190
HspAI GCGC 3 cut(s) 212, 912, 1085
KasI GGCGCC 1 cut(s) 911
Kpn2I TCCGGA 1 cut(s) 458
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 2 cut(s) 345, 539
LmnI GCTCC 3 cut(s) 461, 601, 609
Lsp1109I GCAGC 2 cut(s) 741, 1354
LweI GCATC 3 cut(s) 438, 552, 831
MaeI CTAG 6 cut(s) 290, 362, 726, 1278, 1299, 1458
MaeII ACGT 1 cut(s) 665
MalI GATC 2 cut(s) 347, 541
MboI GATC 2 cut(s) 345, 539
MfeI CAATTG 2 cut(s) 589, 1494
MhlI GDGCHC 2 cut(s) 606, 625
Mly113I GGCGCC 1 cut(s) 912
MlyI GAGTC 4 cut(s) 292, 359, 886, 1320
MmeI TCCRAC 1 cut(s) 989
MroI TCCGGA 1 cut(s) 458
MroXI GAANNNNTTC 3 cut(s) 230, 309, 338
MseI TTAA 4 cut(s) 627, 1245, 1415, 1501
MslI CAYNNNNRTG 3 cut(s) 707, 1115, 1191
MspA1I CMGCKG 1 cut(s) 1240
MspI CCGG 2 cut(s) 459, 915
MspR9I CCNGG 1 cut(s) 916
MunI CAATTG 2 cut(s) 589, 1494
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 529
NarI GGCGCC 1 cut(s) 912
NciI CCSGG 1 cut(s) 916
NcoI CCATGG 2 cut(s) 708, 1130
NdeI CATATG 1 cut(s) 101
NdeII GATC 2 cut(s) 345, 539
NlaIII CATG 4 cut(s) 574, 712, 1134, 1190
NlaIV GGNNCC 1 cut(s) 913
NspV TTCGAA 1 cut(s) 515
PceI AGGCCT 2 cut(s) 450, 1291
PdmI GAANNNNTTC 3 cut(s) 230, 309, 338
PfeI GAWTC 2 cut(s) 40, 1145
PflMI CCANNNNNTGG 1 cut(s) 1257
PkrI GCNGC 2 cut(s) 731, 1369
PleI GAGTC 4 cut(s) 291, 359, 886, 1319
PluTI GGCGCC 1 cut(s) 915
PpsI GAGTC 4 cut(s) 291, 359, 886, 1319
Psp124BI GAGCTC 1 cut(s) 606
PspN4I GGNNCC 1 cut(s) 913
PspPI GGNCC 2 cut(s) 219, 567
PstI CTGCAG 2 cut(s) 448, 759
PvuII CAGCTG 1 cut(s) 1240
RsaI GTAC 3 cut(s) 1154, 1274, 1334
RsaNI GTAC 3 cut(s) 1153, 1273, 1333
RseI CAYNNNNRTG 3 cut(s) 707, 1115, 1191
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 4 cut(s) 627, 1245, 1415, 1501
SatI GCNGC 2 cut(s) 730, 1368
Sau3AI GATC 2 cut(s) 345, 539
Sau96I GGNCC 2 cut(s) 219, 567
SbfI CCTGCAGG 1 cut(s) 448
SchI GAGTC 4 cut(s) 292, 359, 886, 1320
ScrFI CCNGG 1 cut(s) 916
SdaI CCTGCAGG 1 cut(s) 448
SduI GDGCHC 2 cut(s) 606, 625
SfaNI GCATC 3 cut(s) 438, 552, 831
SfcI CTRYAG 2 cut(s) 444, 755
SfoI GGCGCC 1 cut(s) 913
SfuI TTCGAA 1 cut(s) 515
SinI GGWCC 2 cut(s) 219, 567
SmiMI CAYNNNNRTG 3 cut(s) 707, 1115, 1191
SmlI CTYRAG 4 cut(s) 356, 476, 782, 1088
SmoI CTYRAG 4 cut(s) 356, 476, 782, 1088
Sse8387I CCTGCAGG 1 cut(s) 448
SseBI AGGCCT 2 cut(s) 450, 1291
SsiI CCGC 2 cut(s) 165, 565
SspDI GGCGCC 1 cut(s) 911
SspMI CTAG 6 cut(s) 290, 362, 726, 1278, 1299, 1458
SstI GAGCTC 1 cut(s) 606
StuI AGGCCT 2 cut(s) 450, 1291
StyD4I CCNGG 1 cut(s) 914
StyI CCWWGG 3 cut(s) 708, 1130, 1251
TaiI ACGT 1 cut(s) 668
TaqI TCGA 6 cut(s) 224, 281, 515, 662, 970, 1140
TfiI GAWTC 2 cut(s) 40, 1145
Tru1I TTAA 4 cut(s) 627, 1245, 1415, 1501
Tru9I TTAA 4 cut(s) 627, 1245, 1415, 1501
TscAI CASTG 1 cut(s) 1002
TseI GCWGC 2 cut(s) 729, 1367
TspDTI ATGAA 7 cut(s) 108, 542, 587, 914, 918, 939, 1047
TspGWI ACGGA 2 cut(s) 1170, 1350
TspRI CASTG 1 cut(s) 1002
Van91I CCANNNNNTGG 1 cut(s) 1257
VpaK11BI GGWCC 2 cut(s) 219, 567
XapI RAATTY 5 cut(s) 78, 236, 544, 945, 1469
XcmI CCANNNNNNNNNTGG 3 cut(s) 63, 376, 595
XmnI GAANNNNTTC 3 cut(s) 230, 309, 338
XspI CTAG 6 cut(s) 290, 362, 726, 1278, 1299, 1458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.