AT2G41000

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013273
Physical Location & Seq
Forward (+)
17111441 .. 17113636
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41000.1

Sequence Viewer

Length: 555 bp
ATGGTGGATCATTACCAAGTTCTAGGCGTTACGAGAAACGCGACGAAGAAGGAGGTTAAAGATGCGTTTAGGAGATTGGCGATTAAGTATCATCCGGATAAGCACGCTCAGTCTCCGGAGCATGTTCGTCATAACGCCACCGTGCGGTTTAAGCTTGTATCGGAGGCGTACGAAGTTTTGAATGATGATCTGAAACGCGCGTCTTATAACGCTGGTAGCGATTCTGATTGCTTTCGCCGTACGAGCGGTTCGTATAGTAATCCGTATGGAAATCGTGGTGGCAGAGCGCAAGGTTCTGGTTACGGTTATGGTTATGGTTACTCTACGAGGAATCGTCAGGCCTCTAGCTTCAGCAGCGGGTTTGATTCGACGTTTCGTTATTTGACTACGCGAGCGTTTCTATTGAATCTCGCATTAGCTGGTGGTCTGTACTTTGCGTTTACTGCGATTGATACAAGCGGAGAAACACTATGGAAAATGCGTAACTCAGGGAAATCATTCGAAGAAGCAATGGAATCAATCGAGAAATCAAAGTCACATAAAGATGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

184

Amino Acids

20.65

Weight (kDa)

9.44

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 3 - 70 5.2e-22 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41000 AT2G41000
fragaria_vesca FvH4_1g29450 FvH4_1g29450
malus_domestica MD14G1013400.v1.1
prunus_persica Prupe.7G025100_v2.0.a1
pyrus_communis pycom14g01140
rosa_chinensis RchiOBHm_Chr3g0495321
rosa_laevigata RLG00000022629
rosa_multiflora Rmu_ssc0000243.1_g000005
rosa_roxburghii Rroxscaffold_6G00390620
rosa_rugosa Rorug03G0272600 Rorug03G0272700
rosa_samantha Rh3AG320600 Rh3BG355600 Rh3CG352600 Rh3DG354800
rosa_wichuraiana Rw3G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AccBSI CCGCTC 1 cut(s) 246
AccII CGCG 4 cut(s) 41, 198, 200, 391
AccIII TCCGGA 2 cut(s) 94, 115
AciI CCGC 4 cut(s) 145, 246, 357, 459
AclWI GGATC 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 334
AfaI GTAC 3 cut(s) 170, 241, 431
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 2 cut(s) 181, 406
AluBI AGCT 3 cut(s) 154, 348, 419
AluI AGCT 3 cut(s) 154, 348, 419
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 1 cut(s) 15
Aor13HI TCCGGA 2 cut(s) 94, 115
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 497
AspLEI GCGC 2 cut(s) 200, 289
AsuII TTCGAA 1 cut(s) 501
BbvI GCAGC 1 cut(s) 366
BceAI ACGGC 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 2 cut(s) 23, 345
BisI GCNGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 356
BmsI GCATC 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 501
BsaWI WCCGGW 2 cut(s) 94, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 516
BseAI TCCGGA 2 cut(s) 94, 115
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 2 cut(s) 122, 501
BseXI GCAGC 1 cut(s) 366
Bsh1236I CGCG 4 cut(s) 41, 198, 200, 391
BshFI GGCC 1 cut(s) 341
BsiSI CCGG 2 cut(s) 95, 116
BsiWI CGTACG 2 cut(s) 168, 239
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 501
Bsp13I TCCGGA 2 cut(s) 94, 115
Bsp143I GATC 2 cut(s) 7, 187
BspACI CCGC 4 cut(s) 145, 246, 357, 459
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 2 cut(s) 121, 500
BspEI TCCGGA 2 cut(s) 94, 115
BspFNI CGCG 4 cut(s) 41, 198, 200, 391
BspPI GGATC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 501
BsrBI CCGCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 516
BssMI GATC 2 cut(s) 7, 187
Bst4CI ACNGT 2 cut(s) 142, 305
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 105, 393
BstDEI CTNAG 2 cut(s) 108, 487
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 4 cut(s) 41, 198, 200, 391
BstHHI GCGC 2 cut(s) 200, 289
BstKTI GATC 2 cut(s) 10, 190
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 7, 187
BstMWI GCNNNNNNNGC 4 cut(s) 151, 243, 354, 443
BstNSI RCATGY 1 cut(s) 125
BstUI CGCG 4 cut(s) 41, 198, 200, 391
BstV1I GCAGC 1 cut(s) 366
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 105, 393
CfoI GCGC 2 cut(s) 200, 289
CseI GACGC 1 cut(s) 189
Csp6I GTAC 3 cut(s) 169, 240, 430
CviAII CATG 1 cut(s) 122
CviJI RGCY 4 cut(s) 154, 341, 348, 419
CviKI_1 RGCY 4 cut(s) 154, 341, 348, 419
CviQI GTAC 3 cut(s) 169, 240, 430
DdeI CTNAG 2 cut(s) 108, 487
DpnI GATC 2 cut(s) 9, 189
DpnII GATC 2 cut(s) 7, 187
Eco147I AGGCCT 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 334
FaeI CATG 1 cut(s) 125
FaiI YATR 9 cut(s) 123, 132, 207, 255, 267, 309, 315, 472, 540
FatI CATG 1 cut(s) 121
FauI CCCGC 1 cut(s) 350
Fnu4HI GCNGC 1 cut(s) 355
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 355
FspBI CTAG 2 cut(s) 23, 345
GlaI GCGC 2 cut(s) 199, 288
GluI GCNGC 1 cut(s) 355
HaeIII GGCC 1 cut(s) 341
HapII CCGG 2 cut(s) 95, 116
HgaI GACGC 1 cut(s) 189
HhaI GCGC 2 cut(s) 200, 289
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 2 cut(s) 198, 287
HinP1I GCGC 2 cut(s) 198, 287
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 5 cut(s) 221, 331, 365, 406, 515
HpaII CCGG 2 cut(s) 95, 116
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 3 cut(s) 163, 192, 226
Hpy188III TCNNGA 3 cut(s) 95, 116, 523
Hpy8I GTNNAC 1 cut(s) 441
Hpy99I CGWCG 2 cut(s) 46, 373
HpyAV CCTTC 2 cut(s) 43, 542
HpyCH4III ACNGT 2 cut(s) 142, 305
HpyCH4IV ACGT 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 243, 354, 443
HpyF3I CTNAG 2 cut(s) 108, 487
HpySE526I ACGT 1 cut(s) 371
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 2 cut(s) 198, 287
Kpn2I TCCGGA 2 cut(s) 94, 115
Kzo9I GATC 2 cut(s) 7, 187
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 7 cut(s) 108, 129, 198, 282, 323, 405, 474
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 1 cut(s) 52
MaeI CTAG 2 cut(s) 23, 345
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 5 cut(s) 28, 299, 317, 482, 534
MalI GATC 2 cut(s) 9, 189
MbiI CCGCTC 1 cut(s) 246
MboI GATC 2 cut(s) 7, 187
MboII GAAGA 2 cut(s) 58, 515
MnlI CCTC 4 cut(s) 46, 157, 321, 352
MroI TCCGGA 2 cut(s) 94, 115
MroXI GAANNNNTTC 1 cut(s) 497
MseI TTAA 3 cut(s) 57, 84, 150
MslI CAYNNNNRTG 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 357
MspI CCGG 2 cut(s) 95, 116
MvnI CGCG 4 cut(s) 41, 198, 200, 391
MwoI GCNNNNNNNGC 4 cut(s) 151, 243, 354, 443
NdeII GATC 2 cut(s) 7, 187
NlaIII CATG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 534
NspI RCATGY 1 cut(s) 125
NspV TTCGAA 1 cut(s) 501
PceI AGGCCT 1 cut(s) 341
PcsI WCGNNNNNNNCGW 3 cut(s) 38, 216, 248
PdmI GAANNNNTTC 1 cut(s) 497
PfeI GAWTC 5 cut(s) 221, 331, 365, 406, 515
Pfl23II CGTACG 2 cut(s) 168, 239
PkrI GCNGC 1 cut(s) 356
PsiI TTATAA 1 cut(s) 207
PspLI CGTACG 2 cut(s) 168, 239
PsrI GAACNNNNNNTAC 2 cut(s) 232, 264
RsaI GTAC 3 cut(s) 170, 241, 431
RsaNI GTAC 3 cut(s) 169, 240, 430
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 3 cut(s) 57, 84, 150
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 2 cut(s) 7, 187
SetI ASST 6 cut(s) 57, 156, 295, 350, 374, 421
SfaNI GCATC 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 543
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 4 cut(s) 145, 246, 357, 459
SspMI CTAG 2 cut(s) 23, 345
StuI AGGCCT 1 cut(s) 341
TaaI ACNGT 2 cut(s) 142, 305
TaiI ACGT 1 cut(s) 374
TaqI TCGA 3 cut(s) 368, 501, 522
TatI WGTACW 1 cut(s) 429
TfiI GAWTC 5 cut(s) 221, 331, 365, 406, 515
Tru1I TTAA 3 cut(s) 57, 84, 150
Tru9I TTAA 3 cut(s) 57, 84, 150
TseFI GTSAC 1 cut(s) 534
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 1 cut(s) 534
TspGWI ACGGA 1 cut(s) 252
XceI RCATGY 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 497
XspI CTAG 2 cut(s) 23, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.