FvH4_1g29450

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013273
Physical Location & Seq
Reverse (-)
22538400 .. 22540330
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29450.t2

Sequence Viewer

Length: 510 bp
ATGGGCGATCACTACTCGCTGTTGGGATTGACAAGGAATGCGAGCAAACAAGAAATTAAAGAAGCCTTCAGGAAACTGGCGGTGAAGCTGCACCCAGACAAGCATTCCCACTCTTCTAAGGCCGTCAAGGACTCCGCCACCCTCCGATTCAAGCAGGCCTCCGAAGCCTATCAGGTCCTCATTGACGATCGCAAGCGCGCCGACTATAATTTCCGAACCTCCTCCGCCTCCTCCACCGCTTACGGTTACGGTTACGGTTATAGTAATTATAACAACCGCAGATATGCTTCTGCTTCTAAAACCTCCAGCTTTGAGAATCTTGTTCGCTATCTCACCACTCGGGCTTTCCTTCTCAACGTGTCCGTCGCAGGGTGCCTGGCTCTATTCGGTGGCGTGGCTGTCGTTAATATGGGATGGGATGCCTTATGGAAGATACGTAATTCTGGGAAATCATTTGAAGAAGCAATGGAATCTGTCGAAAAAGCCAAAGCACAAAAAGAGAAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

170

Amino Acids

18.94

Weight (kDa)

9.73

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 3 - 70 8.5e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41000 AT2G41000
fragaria_vesca FvH4_1g29450 FvH4_1g29450
malus_domestica MD14G1013400.v1.1
prunus_persica Prupe.7G025100_v2.0.a1
pyrus_communis pycom14g01140
rosa_chinensis RchiOBHm_Chr3g0495321
rosa_laevigata RLG00000022629
rosa_multiflora Rmu_ssc0000243.1_g000005
rosa_roxburghii Rroxscaffold_6G00390620
rosa_rugosa Rorug03G0272600 Rorug03G0272700
rosa_samantha Rh3AG320600 Rh3BG355600 Rh3CG352600 Rh3DG354800
rosa_wichuraiana Rw3G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 372
AccII CGCG 1 cut(s) 198
AciI CCGC 5 cut(s) 80, 135, 225, 237, 277
AcuI CTGAAG 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 369
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 2 cut(s) 151, 458
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 3 cut(s) 88, 309, 505
AluI AGCT 3 cut(s) 88, 309, 505
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 2 cut(s) 120, 156
ApeKI GCWGC 1 cut(s) 88
AspLEI GCGC 2 cut(s) 198, 200
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 94, 325
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 408
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 506
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 289
BsaAI YACGTR 1 cut(s) 437
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 377
BseGI GGATG 2 cut(s) 419, 424
BseLI CCNNNNNNNGG 1 cut(s) 369
BseMI GCAATG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 81
BsePI GCGCGC 1 cut(s) 196
BseRI GAGGAG 2 cut(s) 211, 220
BseXI GCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 122, 158
BshNI GGYRCC 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 369
BsmI GAATGC 2 cut(s) 43, 103
BsnI GGCC 2 cut(s) 122, 158
BsoBI CYCGRG 1 cut(s) 339
Bsp143I GATC 2 cut(s) 7, 187
BspACI CCGC 5 cut(s) 80, 135, 225, 237, 277
BspANI GGCC 2 cut(s) 122, 158
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 1 cut(s) 81
BssHII GCGCGC 1 cut(s) 196
BssMI GATC 2 cut(s) 7, 187
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 3 cut(s) 245, 251, 257
Bst6I CTCTTC 1 cut(s) 118
BstBAI YACGTR 1 cut(s) 437
BstC8I GCNNGC 4 cut(s) 43, 156, 194, 198
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 419, 424
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 2 cut(s) 198, 200
BstKTI GATC 2 cut(s) 10, 190
BstMBI GATC 2 cut(s) 7, 187
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 506
BstSNI TACGTA 1 cut(s) 437
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 75
BsuRI GGCC 2 cut(s) 122, 158
BtsCI GGATG 2 cut(s) 419, 424
Cac8I GCNNGC 4 cut(s) 43, 156, 194, 198
CfoI GCGC 2 cut(s) 198, 200
Cfr13I GGNCC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 9, 189
DpnII GATC 2 cut(s) 7, 187
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
EciI GGCGGA 2 cut(s) 124, 214
Eco105I TACGTA 1 cut(s) 437
Eco147I AGGCCT 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 375
FaiI YATR 6 cut(s) 207, 261, 270, 285, 410, 427
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 2 cut(s) 426, 431
Fsp4HI GCNGC 1 cut(s) 89
GlaI GCGC 2 cut(s) 197, 199
GluI GCNGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 289
HaeIII GGCC 2 cut(s) 122, 158
HhaI GCGC 2 cut(s) 198, 200
Hin6I GCGC 2 cut(s) 196, 198
HinP1I GCGC 2 cut(s) 196, 198
HinfI GANTC 4 cut(s) 131, 147, 316, 470
HphI GGTGA 2 cut(s) 94, 325
Hpy188I TCNGA 3 cut(s) 146, 163, 215
Hpy188III TCNNGA 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 2 cut(s) 76, 359
HpyCH4III ACNGT 3 cut(s) 245, 251, 257
HpyCH4IV ACGT 2 cut(s) 357, 436
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 2 cut(s) 357, 436
HspAI GCGC 2 cut(s) 196, 198
Kzo9I GATC 2 cut(s) 7, 187
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 409
MaeII ACGT 2 cut(s) 357, 436
MaeIII GTNAC 2 cut(s) 245, 251
MalI GATC 2 cut(s) 9, 189
MboI GATC 2 cut(s) 7, 187
MboII GAAGA 3 cut(s) 105, 442, 470
MluCI AATT 4 cut(s) 54, 208, 265, 439
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 8 cut(s) 152, 169, 188, 229, 232, 238, 241, 313
MseI TTAA 2 cut(s) 57, 405
MspR9I CCNGG 1 cut(s) 377
Mva1269I GAATGC 2 cut(s) 43, 103
MvaI CCWGG 1 cut(s) 377
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 2 cut(s) 7, 187
NlaIV GGNNCC 1 cut(s) 374
PauI GCGCGC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 158
PctI GAATGC 2 cut(s) 43, 103
PfeI GAWTC 3 cut(s) 147, 316, 470
PkrI GCNGC 1 cut(s) 90
Ple19I CGATCG 1 cut(s) 190
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Ppu21I YACGTR 1 cut(s) 437
PpuMI RGGWCCY 1 cut(s) 175
PsiI TTATAA 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 374
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PteI GCGCGC 1 cut(s) 196
PvuI CGATCG 1 cut(s) 190
SaqAI TTAA 2 cut(s) 57, 405
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 7, 187
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 377
SetI ASST 8 cut(s) 90, 177, 221, 305, 311, 360, 439, 507
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 506
SinI GGWCC 1 cut(s) 175
SnaBI TACGTA 1 cut(s) 437
Sse9I AATT 4 cut(s) 54, 208, 265, 439
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 5 cut(s) 80, 135, 225, 237, 277
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 3 cut(s) 245, 251, 257
TaiI ACGT 2 cut(s) 360, 439
TaqI TCGA 1 cut(s) 477
TasI AATT 4 cut(s) 54, 208, 265, 439
TfiI GAWTC 3 cut(s) 147, 316, 470
Tru1I TTAA 2 cut(s) 57, 405
Tru9I TTAA 2 cut(s) 57, 405
TseI GCWGC 1 cut(s) 88
TspGWI ACGGA 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.