pycom14g01140

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013273
Physical Location & Seq
Reverse (-)
804379 .. 805564
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g01140.2

Sequence Viewer

Length: 537 bp
ATGGATCACTACAAGGTATTGGGGCTGGCGAGGAACGCGAGCAAAGCCGAAATCAAGGAAGCGTTCAGGAGGCTGGCGGTGAAGCTTCACCCAGACAAGCACTCCGCATCCCCCAAGGCGGAGAGAGACAGAGCCACCGTCCGATTCAAGCAGGTCTCCGAGGCCTACCAGGTCCTCATCGACGATCGCAAGCGCGCCGACTACAATTTCCAGAGCTCGCACCGCCCCCACAACAATTACAATACCTACACTCGCACTTACAATTACGGTTACGGATATAGTGGTGGTAATAGTTACAGAAGAGGCGGTGGCTCCGGAGCCGCCAGTGGAGCTTCCTCCGCCTTTGAGAATTTTCTCCGATATGTCACAACGCGCGCTTTCCTTCTCAATGTCTCCGTCGCAGGGGCTTTCTTAGGTGGTATAGCAGTTGTTAATTTGGGCTGGGATTCCTTATGGAAGATGCATAATCATGAGAAATCATTTGAAGAAGCCATGAAATCCGTTCGAAAAGCCAAAGCACGTACAGAGAAGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

179

Amino Acids

20.07

Weight (kDa)

10.02

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41000 AT2G41000
fragaria_vesca FvH4_1g29450 FvH4_1g29450
malus_domestica MD14G1013400.v1.1
prunus_persica Prupe.7G025100_v2.0.a1
pyrus_communis pycom14g01140
rosa_chinensis RchiOBHm_Chr3g0495321
rosa_laevigata RLG00000022629
rosa_multiflora Rmu_ssc0000243.1_g000005
rosa_roxburghii Rroxscaffold_6G00390620
rosa_rugosa Rorug03G0272600 Rorug03G0272700
rosa_samantha Rh3AG320600 Rh3BG355600 Rh3CG352600 Rh3DG354800
rosa_wichuraiana Rw3G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AccII CGCG 4 cut(s) 38, 195, 373, 375
AccIII TCCGGA 1 cut(s) 314
AciI CCGC 7 cut(s) 77, 105, 119, 223, 306, 321, 339
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 349
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 2 cut(s) 118, 402
AgsI TTSAA 2 cut(s) 148, 485
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 85, 216, 332
AluI AGCT 3 cut(s) 85, 216, 332
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 3 cut(s) 120, 160, 397
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 349
AspLEI GCGC 4 cut(s) 195, 197, 375, 377
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 80, 91
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 517
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 3 cut(s) 120, 160, 397
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 2 cut(s) 313, 319
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 2 cut(s) 116, 450
Bpu14I TTCGAA 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 114, 159
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 402
Bse1I ACTGG 1 cut(s) 324
BseAI TCCGGA 1 cut(s) 314
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 114, 159
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 118, 402
BseNI ACTGG 1 cut(s) 324
BsePI GCGCGC 2 cut(s) 193, 373
BseYI CCCAGC 1 cut(s) 441
Bsh1236I CGCG 4 cut(s) 38, 195, 373, 375
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 118, 402
BsmAI GTCTC 3 cut(s) 120, 160, 397
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 160
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 218
Bsp13I TCCGGA 1 cut(s) 314
Bsp143I GATC 2 cut(s) 4, 184
BspACI CCGC 7 cut(s) 77, 105, 119, 223, 306, 321, 339
BspANI GGCC 1 cut(s) 164
BspEI TCCGGA 1 cut(s) 314
BspFNI CGCG 4 cut(s) 38, 195, 373, 375
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 313, 319
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 114, 159
BssHII GCGCGC 2 cut(s) 193, 373
BssMI GATC 2 cut(s) 4, 184
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 139, 269
Bst6I CTCTTC 1 cut(s) 295
BstBAI YACGTR 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 7 cut(s) 27, 40, 75, 191, 195, 218, 375
BstDEI CTNAG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 4 cut(s) 38, 195, 373, 375
BstHHI GCGC 4 cut(s) 195, 197, 375, 377
BstKTI GATC 2 cut(s) 7, 187
BstMAI GTCTC 3 cut(s) 120, 160, 397
BstMBI GATC 2 cut(s) 4, 184
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 5 cut(s) 35, 44, 222, 329, 338
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 4 cut(s) 38, 195, 373, 375
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 331
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 7 cut(s) 27, 40, 75, 191, 195, 218, 375
CciI TCATGA 1 cut(s) 469
CfoI GCGC 4 cut(s) 195, 197, 375, 377
Cfr13I GGNCC 1 cut(s) 172
CsiI ACCWGGT 1 cut(s) 168
Csp6I GTAC 1 cut(s) 522
CviAII CATG 2 cut(s) 470, 493
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 1 cut(s) 412
DpnI GATC 2 cut(s) 6, 186
DpnII GATC 2 cut(s) 4, 184
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
EciI GGCGGA 2 cut(s) 134, 328
Ecl136II GAGCTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 2 cut(s) 473, 496
FaiI YATR 7 cut(s) 279, 363, 422, 454, 465, 471, 494
FatI CATG 2 cut(s) 469, 492
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 321
GlaI GCGC 4 cut(s) 194, 196, 374, 376
GluI GCNGC 1 cut(s) 321
GsaI CCCAGC 1 cut(s) 445
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 315
HhaI GCGC 4 cut(s) 195, 197, 375, 377
Hin1II CATG 2 cut(s) 473, 496
Hin6I GCGC 4 cut(s) 193, 195, 373, 375
HinP1I GCGC 4 cut(s) 193, 195, 373, 375
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 2 cut(s) 144, 446
HpaII CCGG 1 cut(s) 315
HphI GGTGA 2 cut(s) 80, 91
Hpy188I TCNGA 3 cut(s) 143, 160, 359
Hpy188III TCNNGA 4 cut(s) 67, 211, 315, 470
Hpy99I CGWCG 2 cut(s) 185, 401
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 139, 269
HpyCH4IV ACGT 1 cut(s) 520
HpyCH4V TGCA 1 cut(s) 463
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 44, 222, 329, 338
HpyF3I CTNAG 1 cut(s) 412
HpySE526I ACGT 1 cut(s) 520
Hsp92II CATG 2 cut(s) 473, 496
HspAI GCGC 4 cut(s) 193, 195, 373, 375
Kpn2I TCCGGA 1 cut(s) 314
Kzo9I GATC 2 cut(s) 4, 184
LmnI GCTCC 3 cut(s) 317, 317, 329
LweI GCATC 2 cut(s) 116, 450
MabI ACCWGGT 1 cut(s) 168
MaeII ACGT 1 cut(s) 520
MaeIII GTNAC 3 cut(s) 269, 293, 364
MalI GATC 2 cut(s) 6, 186
MboI GATC 2 cut(s) 4, 184
MboII GAAGA 3 cut(s) 312, 469, 497
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 5 cut(s) 205, 235, 262, 349, 433
MnlI CCTC 6 cut(s) 24, 63, 154, 185, 296, 346
Mph1103I ATGCAT 1 cut(s) 465
MroI TCCGGA 1 cut(s) 314
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 468
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 4 cut(s) 38, 195, 373, 375
MwoI GCNNNNNNNGC 5 cut(s) 35, 44, 222, 329, 338
NdeII GATC 2 cut(s) 4, 184
NlaIII CATG 2 cut(s) 473, 496
NlaIV GGNNCC 2 cut(s) 313, 319
NmuCI GTSAC 1 cut(s) 364
NsiI ATGCAT 1 cut(s) 465
NspV TTCGAA 1 cut(s) 505
PagI TCATGA 1 cut(s) 469
PauI GCGCGC 2 cut(s) 193, 373
PceI AGGCCT 1 cut(s) 164
PfeI GAWTC 2 cut(s) 144, 446
PkrI GCNGC 1 cut(s) 322
Ple19I CGATCG 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 521
PpuMI RGGWCCY 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 441
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 313, 319
PspPI GGNCC 1 cut(s) 172
PspPPI RGGWCCY 1 cut(s) 172
PteI GCGCGC 2 cut(s) 193, 373
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
RseI CAYNNNNRTG 1 cut(s) 468
SacI GAGCTC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 2 cut(s) 4, 184
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 218
SetI ASST 9 cut(s) 18, 87, 156, 174, 218, 248, 334, 418, 523
SexAI ACCWGGT 1 cut(s) 168
SfaNI GCATC 2 cut(s) 116, 450
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 468
Sse9I AATT 5 cut(s) 205, 235, 262, 349, 433
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 7 cut(s) 77, 105, 119, 223, 306, 321, 339
SstI GAGCTC 1 cut(s) 218
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 139, 269
TaiI ACGT 1 cut(s) 523
TaqI TCGA 2 cut(s) 180, 505
TasI AATT 5 cut(s) 205, 235, 262, 349, 433
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 2 cut(s) 144, 446
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 1 cut(s) 509
TspGWI ACGGA 3 cut(s) 288, 385, 490
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 1 cut(s) 349
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.