Rroxscaffold_6G00390620

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013273
Physical Location & Seq
Reverse (-)
5982776 .. 5984611
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390620.1

Sequence Viewer

Length: 525 bp
ATGGGTGATCACTACTCGGTATTGGGTCTGACAAGGAATGCGAGCAAAGAAGAAATTAAAGAGGCGTTCAGGAAGCTGGCGGTGAAGCTGCACCCAGACAAGCATTCCCATTCTTCTAAGGCGGTGAGGGACACCGCCACCCTCCGATTCAAGCAGGCCTCCGAAGCCTATCAGGTCCTCATCGACGATCGCAAGCGCGCCGACTACAATTTCCGAACCTCATCCGCTTCCTATTCCCGAACCTCCTCCTCCTCCTCCTCCTCCTCCGGTTACGGTTACGGTTATAGTAGAAATAACCGCAATTATGCTTCTGCTTCTAGACCCTCCAGCTTTGACAGTCTGCTTCGCTATGTCACCACGCGTGCCTTCCTTCTCAACGTCTCCGTTGCAGGGGCTCTATTAGGTGGCGTGGGCGTCGTTAATATGGGATGGGATGCTCTATGGAAGATACGTAATTCTGGGAAATCATTTGAAGAAGCGATGGAATCTGTTGAAAAGGCCAAAGCACATAAAGAGAAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

174

Amino Acids

19.32

Weight (kDa)

9.88

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 3 - 70 3.5e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41000 AT2G41000
fragaria_vesca FvH4_1g29450 FvH4_1g29450
malus_domestica MD14G1013400.v1.1
prunus_persica Prupe.7G025100_v2.0.a1
pyrus_communis pycom14g01140
rosa_chinensis RchiOBHm_Chr3g0495321
rosa_laevigata RLG00000022629
rosa_multiflora Rmu_ssc0000243.1_g000005
rosa_roxburghii Rroxscaffold_6G00390620
rosa_rugosa Rorug03G0272600 Rorug03G0272700
rosa_samantha Rh3AG320600 Rh3BG355600 Rh3CG352600 Rh3DG354800
rosa_wichuraiana Rw3G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 198, 361
AciI CCGC 5 cut(s) 80, 122, 135, 225, 298
AcyI GRCGYC 1 cut(s) 414
AfiI CCNNNNNNNGG 1 cut(s) 390
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 3 cut(s) 151, 473, 494
AluBI AGCT 4 cut(s) 76, 88, 330, 520
AluI AGCT 4 cut(s) 76, 88, 330, 520
Alw26I GTCTC 1 cut(s) 385
AoxI GGCC 2 cut(s) 156, 498
ApeKI GCWGC 1 cut(s) 88
AspLEI GCGC 2 cut(s) 198, 200
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 4 cut(s) 17, 94, 136, 346
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 397
BbvI GCAGC 1 cut(s) 75
BccI CCATC 2 cut(s) 423, 475
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 521
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 424
BpmI CTGGAG 1 cut(s) 310
BsaAI YACGTR 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 414
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 390
BseGI GGATG 3 cut(s) 221, 434, 439
BseLI CCNNNNNNNGG 1 cut(s) 390
BsePI GCGCGC 1 cut(s) 196
BseRI GAGGAG 7 cut(s) 235, 238, 241, 244, 247, 250, 253
BseXI GCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 2 cut(s) 198, 361
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 158, 500
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 1 cut(s) 385
BsmBI CGTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 2 cut(s) 43, 103
BsnI GGCC 2 cut(s) 158, 500
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 2 cut(s) 7, 187
BspACI CCGC 5 cut(s) 80, 122, 135, 225, 298
BspANI GGCC 2 cut(s) 158, 500
BspFNI CGCG 2 cut(s) 198, 361
BssHII GCGCGC 1 cut(s) 196
BssMI GATC 2 cut(s) 7, 187
BssNI GRCGYC 1 cut(s) 414
Bst4CI ACNGT 3 cut(s) 275, 281, 338
BstACI GRCGYC 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 452
BstC8I GCNNGC 6 cut(s) 43, 78, 156, 194, 198, 363
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 221, 434, 439
BstFNI CGCG 2 cut(s) 198, 361
BstHHI GCGC 2 cut(s) 198, 200
BstKTI GATC 2 cut(s) 10, 190
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 7, 187
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 521
BstSNI TACGTA 1 cut(s) 452
BstUI CGCG 2 cut(s) 198, 361
BstV1I GCAGC 1 cut(s) 75
BsuRI GGCC 2 cut(s) 158, 500
BtgZI GCGATG 1 cut(s) 494
BtsCI GGATG 3 cut(s) 221, 434, 439
Cac8I GCNNGC 6 cut(s) 43, 78, 156, 194, 198, 363
CfoI GCGC 2 cut(s) 198, 200
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 403
CviJI RGCY 8 cut(s) 76, 88, 158, 167, 330, 395, 500, 520
CviKI_1 RGCY 8 cut(s) 76, 88, 158, 167, 330, 395, 500, 520
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 9, 189
DpnII GATC 2 cut(s) 7, 187
Eco105I TACGTA 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 397
Esp3I CGTCTC 1 cut(s) 385
FaiI YATR 6 cut(s) 285, 306, 351, 425, 442, 510
FaqI GGGAC 1 cut(s) 143
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 3 cut(s) 208, 441, 446
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 318
GlaI GCGC 2 cut(s) 197, 199
GluI GCNGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 310
HaeIII GGCC 2 cut(s) 158, 500
HapII CCGG 1 cut(s) 267
HgaI GACGC 1 cut(s) 403
HhaI GCGC 2 cut(s) 198, 200
Hin1I GRCGYC 1 cut(s) 414
Hin6I GCGC 2 cut(s) 196, 198
HinP1I GCGC 2 cut(s) 196, 198
HinfI GANTC 2 cut(s) 147, 485
HpaII CCGG 1 cut(s) 267
HphI GGTGA 4 cut(s) 17, 94, 136, 346
Hpy188I TCNGA 4 cut(s) 30, 146, 163, 215
Hpy188III TCNNGA 3 cut(s) 70, 237, 318
Hpy99I CGWCG 2 cut(s) 188, 419
HpyAV CCTTC 2 cut(s) 376, 380
HpyCH4III ACNGT 3 cut(s) 275, 281, 338
HpyCH4IV ACGT 2 cut(s) 378, 451
HpyCH4V TGCA 2 cut(s) 91, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 2 cut(s) 378, 451
Hsp92I GRCGYC 1 cut(s) 414
HspAI GCGC 2 cut(s) 196, 198
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 187
LpnPI CCDG 9 cut(s) 55, 62, 108, 140, 158, 280, 340, 375, 444
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 318
MaeII ACGT 2 cut(s) 378, 451
MaeIII GTNAC 3 cut(s) 269, 275, 352
MalI GATC 2 cut(s) 9, 189
MboI GATC 2 cut(s) 7, 187
MboII GAAGA 4 cut(s) 62, 105, 457, 485
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 4 cut(s) 54, 208, 301, 454
MluI ACGCGT 1 cut(s) 359
MseI TTAA 2 cut(s) 57, 420
MspI CCGG 1 cut(s) 267
Mva1269I GAATGC 2 cut(s) 43, 103
MvnI CGCG 2 cut(s) 198, 361
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 2 cut(s) 7, 187
NmuCI GTSAC 1 cut(s) 352
PauI GCGCGC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 158
PctI GAATGC 2 cut(s) 43, 103
PfeI GAWTC 2 cut(s) 147, 485
PkrI GCNGC 1 cut(s) 90
Ple19I CGATCG 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 452
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PteI GCGCGC 1 cut(s) 196
PvuI CGATCG 1 cut(s) 190
SaqAI TTAA 2 cut(s) 57, 420
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 7, 187
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 521
SinI GGWCC 1 cut(s) 175
SnaBI TACGTA 1 cut(s) 452
Sse9I AATT 4 cut(s) 54, 208, 301, 454
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 5 cut(s) 80, 122, 135, 225, 298
SspMI CTAG 1 cut(s) 318
StuI AGGCCT 1 cut(s) 158
TaaI ACNGT 3 cut(s) 275, 281, 338
TaiI ACGT 2 cut(s) 381, 454
TaqI TCGA 1 cut(s) 183
TasI AATT 4 cut(s) 54, 208, 301, 454
TfiI GAWTC 2 cut(s) 147, 485
Tru1I TTAA 2 cut(s) 57, 420
Tru9I TTAA 2 cut(s) 57, 420
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 352
TspGWI ACGGA 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 175
XbaI TCTAGA 1 cut(s) 317
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.