Rh3DG354800

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013273
Physical Location & Seq
Forward (+)
43002864 .. 43004343
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG354800.1

Sequence Viewer

Length: 516 bp
ATGGGTGATCACTACTCGGTATTGGGTCTGACAAGGAATGCGAGCAAAGAAGAAATTAAAGAGGCGTTCAGGAAGCTGGCGGTGAAGCTGCACCCAGACAAGCATTCCCATTCTTCTAAGGCGGTGAGGGACACCGCCACCCTCCGATTCAAGCAGGCCTCCGAAGCCTATCAGGTCCTCATCGACGATCGCAAGCGCGCCGACTACAATTTCCGAACCTCATCCGCTTCCTATTCCCGAACCTCCTCCTCCTCCTCCTCCTCCGGTTACGGTTACAGTAGAAATAACCGCAATTATGCTTCTGCTTCTAGACCCTCCAGCTTTGACAGTCTGCTTCGCTATGTCACCACGCGTGCCTTCCTTCTCAACGTCTCCGTTGCAGGGGCTCTATTAGGTGGCGTGGGCGTCGTTAATATGGGATGGGATGCCTTATGGAAGATACGTAATTCTGGGAAATCATTTGAAGAAGCGATGGAATCTGTTGAAAAGGCCAAAGCACATAAAGAGAAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

171

Amino Acids

19.01

Weight (kDa)

9.91

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 3 - 70 3.4e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41000 AT2G41000
fragaria_vesca FvH4_1g29450 FvH4_1g29450
malus_domestica MD14G1013400.v1.1
prunus_persica Prupe.7G025100_v2.0.a1
pyrus_communis pycom14g01140
rosa_chinensis RchiOBHm_Chr3g0495321
rosa_laevigata RLG00000022629
rosa_multiflora Rmu_ssc0000243.1_g000005
rosa_roxburghii Rroxscaffold_6G00390620
rosa_rugosa Rorug03G0272600 Rorug03G0272700
rosa_samantha Rh3AG320600 Rh3BG355600 Rh3CG352600 Rh3DG354800
rosa_wichuraiana Rw3G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 198, 352
AciI CCGC 5 cut(s) 80, 122, 135, 225, 289
AcyI GRCGYC 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 381
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 3 cut(s) 151, 464, 485
AluBI AGCT 4 cut(s) 76, 88, 321, 511
AluI AGCT 4 cut(s) 76, 88, 321, 511
Alw26I GTCTC 1 cut(s) 376
AoxI GGCC 2 cut(s) 156, 489
ApeKI GCWGC 1 cut(s) 88
AspLEI GCGC 2 cut(s) 198, 200
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 4 cut(s) 17, 94, 136, 337
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 75
BccI CCATC 2 cut(s) 414, 466
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 512
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 415
BpmI CTGGAG 1 cut(s) 301
BsaAI YACGTR 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 405
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 381
BseGI GGATG 3 cut(s) 221, 425, 430
BseLI CCNNNNNNNGG 1 cut(s) 381
BsePI GCGCGC 1 cut(s) 196
BseRI GAGGAG 6 cut(s) 235, 238, 241, 244, 247, 250
BseXI GCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 2 cut(s) 198, 352
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 158, 491
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 376
BsmBI CGTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 2 cut(s) 43, 103
BsnI GGCC 2 cut(s) 158, 491
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 2 cut(s) 7, 187
BspACI CCGC 5 cut(s) 80, 122, 135, 225, 289
BspANI GGCC 2 cut(s) 158, 491
BspFNI CGCG 2 cut(s) 198, 352
BssHII GCGCGC 1 cut(s) 196
BssMI GATC 2 cut(s) 7, 187
BssNI GRCGYC 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 272, 278, 329
BstACI GRCGYC 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 6 cut(s) 43, 78, 156, 194, 198, 354
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 221, 425, 430
BstFNI CGCG 2 cut(s) 198, 352
BstHHI GCGC 2 cut(s) 198, 200
BstKTI GATC 2 cut(s) 10, 190
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 2 cut(s) 7, 187
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 512
BstSNI TACGTA 1 cut(s) 443
BstUI CGCG 2 cut(s) 198, 352
BstV1I GCAGC 1 cut(s) 75
BsuRI GGCC 2 cut(s) 158, 491
BtgZI GCGATG 1 cut(s) 485
BtsCI GGATG 3 cut(s) 221, 425, 430
Cac8I GCNNGC 6 cut(s) 43, 78, 156, 194, 198, 354
CfoI GCGC 2 cut(s) 198, 200
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 394
CviJI RGCY 8 cut(s) 76, 88, 158, 167, 321, 386, 491, 511
CviKI_1 RGCY 8 cut(s) 76, 88, 158, 167, 321, 386, 491, 511
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 9, 189
DpnII GATC 2 cut(s) 7, 187
Eco105I TACGTA 1 cut(s) 443
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 376
FaiI YATR 5 cut(s) 297, 342, 416, 433, 501
FaqI GGGAC 1 cut(s) 143
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 3 cut(s) 208, 432, 437
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 309
GlaI GCGC 2 cut(s) 197, 199
GluI GCNGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 301
HaeIII GGCC 2 cut(s) 158, 491
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 394
HhaI GCGC 2 cut(s) 198, 200
Hin1I GRCGYC 1 cut(s) 405
Hin6I GCGC 2 cut(s) 196, 198
HinP1I GCGC 2 cut(s) 196, 198
HinfI GANTC 2 cut(s) 147, 476
HpaII CCGG 1 cut(s) 264
HphI GGTGA 4 cut(s) 17, 94, 136, 337
Hpy188I TCNGA 4 cut(s) 30, 146, 163, 215
Hpy188III TCNNGA 3 cut(s) 70, 237, 309
Hpy99I CGWCG 2 cut(s) 188, 410
HpyAV CCTTC 2 cut(s) 367, 371
HpyCH4III ACNGT 3 cut(s) 272, 278, 329
HpyCH4IV ACGT 2 cut(s) 369, 442
HpyCH4V TGCA 2 cut(s) 91, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 2 cut(s) 369, 442
Hsp92I GRCGYC 1 cut(s) 405
HspAI GCGC 2 cut(s) 196, 198
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 187
LpnPI CCDG 9 cut(s) 55, 62, 108, 140, 158, 277, 331, 366, 435
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 415
MaeI CTAG 1 cut(s) 309
MaeII ACGT 2 cut(s) 369, 442
MaeIII GTNAC 3 cut(s) 266, 272, 343
MalI GATC 2 cut(s) 9, 189
MboI GATC 2 cut(s) 7, 187
MboII GAAGA 4 cut(s) 62, 105, 448, 476
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 4 cut(s) 54, 208, 292, 445
MluI ACGCGT 1 cut(s) 350
MseI TTAA 2 cut(s) 57, 411
MspI CCGG 1 cut(s) 264
Mva1269I GAATGC 2 cut(s) 43, 103
MvnI CGCG 2 cut(s) 198, 352
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 2 cut(s) 7, 187
NmuCI GTSAC 1 cut(s) 343
PauI GCGCGC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 158
PctI GAATGC 2 cut(s) 43, 103
PfeI GAWTC 2 cut(s) 147, 476
PkrI GCNGC 1 cut(s) 90
Ple19I CGATCG 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 443
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PteI GCGCGC 1 cut(s) 196
PvuI CGATCG 1 cut(s) 190
SaqAI TTAA 2 cut(s) 57, 411
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 7, 187
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 512
SinI GGWCC 1 cut(s) 175
SnaBI TACGTA 1 cut(s) 443
Sse9I AATT 4 cut(s) 54, 208, 292, 445
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 5 cut(s) 80, 122, 135, 225, 289
SspMI CTAG 1 cut(s) 309
StuI AGGCCT 1 cut(s) 158
TaaI ACNGT 3 cut(s) 272, 278, 329
TaiI ACGT 2 cut(s) 372, 445
TaqI TCGA 1 cut(s) 183
TasI AATT 4 cut(s) 54, 208, 292, 445
TfiI GAWTC 2 cut(s) 147, 476
Tru1I TTAA 2 cut(s) 57, 411
Tru9I TTAA 2 cut(s) 57, 411
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 343
TspGWI ACGGA 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 175
XbaI TCTAGA 1 cut(s) 308
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.