Rmu_ssc0000243.1_g000005

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000243.1
OG0013273
Physical Location & Seq
Forward (+)
13880 .. 15512
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000243.1_g000005.1.cds

Sequence Viewer

Length: 519 bp
atgggtgatcactactcggtattgggtctgacaaggaatgcgagcaaagaagaaattaaagaggcgttcaggaagctggcggtgaagctgcacccagacaagcattcccattcttctaaggcggtgagggacaccgccaccctccgattcaagcaggcctccgaagcctatcaggtcctcatcgacgatcgcaagcgcgccgactacaatttccgaacctcatccgcttcctattcccgaacctcctcctcctcctcctcctcctccggttacggtgacagtagaaataaccgcaattatgcttctgcttctagaccctccagctttgacagtctgcttcgctatgtcaccacgcgtgccttccttctcaacgtctccgttgcaggggctctattaggtggcgtgggcgtcgttaatatgggatgggatgccttatggaagatacgtaattctgggaaatcatttgaagaagcgatggaatctgttgaaaaggccaaagcacataaagagaagctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

172

Amino Acids

19.05

Weight (kDa)

9.87

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41000 AT2G41000
fragaria_vesca FvH4_1g29450 FvH4_1g29450
malus_domestica MD14G1013400.v1.1
prunus_persica Prupe.7G025100_v2.0.a1
pyrus_communis pycom14g01140
rosa_chinensis RchiOBHm_Chr3g0495321
rosa_laevigata RLG00000022629
rosa_multiflora Rmu_ssc0000243.1_g000005
rosa_roxburghii Rroxscaffold_6G00390620
rosa_rugosa Rorug03G0272600 Rorug03G0272700
rosa_samantha Rh3AG320600 Rh3BG355600 Rh3CG352600 Rh3DG354800
rosa_wichuraiana Rw3G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 198, 355
AciI CCGC 5 cut(s) 80, 122, 135, 225, 292
AcyI GRCGYC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 384
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 3 cut(s) 151, 467, 488
AluBI AGCT 4 cut(s) 76, 88, 324, 514
AluI AGCT 4 cut(s) 76, 88, 324, 514
Alw26I GTCTC 1 cut(s) 379
AoxI GGCC 2 cut(s) 156, 492
ApeKI GCWGC 1 cut(s) 88
AspLEI GCGC 2 cut(s) 198, 200
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 5 cut(s) 17, 94, 136, 287, 340
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 75
BccI CCATC 2 cut(s) 417, 469
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 515
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 418
BpmI CTGGAG 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 384
BseGI GGATG 3 cut(s) 221, 428, 433
BseLI CCNNNNNNNGG 1 cut(s) 384
BsePI GCGCGC 1 cut(s) 196
BseRI GAGGAG 7 cut(s) 235, 238, 241, 244, 247, 250, 253
BseXI GCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 2 cut(s) 198, 355
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 158, 494
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 379
BsmBI CGTCTC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 2 cut(s) 43, 103
BsnI GGCC 2 cut(s) 158, 494
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 2 cut(s) 7, 187
BspACI CCGC 5 cut(s) 80, 122, 135, 225, 292
BspANI GGCC 2 cut(s) 158, 494
BspFNI CGCG 2 cut(s) 198, 355
BssHII GCGCGC 1 cut(s) 196
BssMI GATC 2 cut(s) 7, 187
BssNI GRCGYC 1 cut(s) 408
Bst4CI ACNGT 3 cut(s) 275, 281, 332
BstACI GRCGYC 1 cut(s) 408
BstBAI YACGTR 1 cut(s) 446
BstC8I GCNNGC 6 cut(s) 43, 78, 156, 194, 198, 357
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 221, 428, 433
BstFNI CGCG 2 cut(s) 198, 355
BstHHI GCGC 2 cut(s) 198, 200
BstKTI GATC 2 cut(s) 10, 190
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 2 cut(s) 7, 187
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 515
BstSNI TACGTA 1 cut(s) 446
BstUI CGCG 2 cut(s) 198, 355
BstV1I GCAGC 1 cut(s) 75
BsuRI GGCC 2 cut(s) 158, 494
BtgZI GCGATG 1 cut(s) 488
BtsCI GGATG 3 cut(s) 221, 428, 433
Cac8I GCNNGC 6 cut(s) 43, 78, 156, 194, 198, 357
CfoI GCGC 2 cut(s) 198, 200
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 397
CviJI RGCY 8 cut(s) 76, 88, 158, 167, 324, 389, 494, 514
CviKI_1 RGCY 8 cut(s) 76, 88, 158, 167, 324, 389, 494, 514
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 9, 189
DpnII GATC 2 cut(s) 7, 187
Eco105I TACGTA 1 cut(s) 446
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 379
FaiI YATR 5 cut(s) 300, 345, 419, 436, 504
FaqI GGGAC 1 cut(s) 143
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 3 cut(s) 208, 435, 440
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 312
GlaI GCGC 2 cut(s) 197, 199
GluI GCNGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 2 cut(s) 158, 494
HapII CCGG 1 cut(s) 267
HgaI GACGC 1 cut(s) 397
HhaI GCGC 2 cut(s) 198, 200
Hin1I GRCGYC 1 cut(s) 408
Hin6I GCGC 2 cut(s) 196, 198
HinP1I GCGC 2 cut(s) 196, 198
HinfI GANTC 2 cut(s) 147, 479
HpaII CCGG 1 cut(s) 267
HphI GGTGA 5 cut(s) 17, 94, 136, 287, 340
Hpy188I TCNGA 4 cut(s) 30, 146, 163, 215
Hpy188III TCNNGA 3 cut(s) 70, 237, 312
Hpy99I CGWCG 2 cut(s) 188, 413
HpyAV CCTTC 2 cut(s) 370, 374
HpyCH4III ACNGT 3 cut(s) 275, 281, 332
HpyCH4IV ACGT 2 cut(s) 372, 445
HpyCH4V TGCA 2 cut(s) 91, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 2 cut(s) 372, 445
Hsp92I GRCGYC 1 cut(s) 408
HspAI GCGC 2 cut(s) 196, 198
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 187
LpnPI CCDG 9 cut(s) 55, 62, 108, 140, 158, 280, 334, 369, 438
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 418
MaeI CTAG 1 cut(s) 312
MaeII ACGT 2 cut(s) 372, 445
MaeIII GTNAC 3 cut(s) 269, 275, 346
MalI GATC 2 cut(s) 9, 189
MboI GATC 2 cut(s) 7, 187
MboII GAAGA 4 cut(s) 62, 105, 451, 479
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 4 cut(s) 54, 208, 295, 448
MluI ACGCGT 1 cut(s) 353
MseI TTAA 2 cut(s) 57, 414
MspI CCGG 1 cut(s) 267
Mva1269I GAATGC 2 cut(s) 43, 103
MvnI CGCG 2 cut(s) 198, 355
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 2 cut(s) 7, 187
NmuCI GTSAC 2 cut(s) 275, 346
PauI GCGCGC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 158
PctI GAATGC 2 cut(s) 43, 103
PfeI GAWTC 2 cut(s) 147, 479
PkrI GCNGC 1 cut(s) 90
Ple19I CGATCG 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 446
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PteI GCGCGC 1 cut(s) 196
PvuI CGATCG 1 cut(s) 190
SaqAI TTAA 2 cut(s) 57, 414
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 7, 187
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 391
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 515
SinI GGWCC 1 cut(s) 175
SnaBI TACGTA 1 cut(s) 446
Sse9I AATT 4 cut(s) 54, 208, 295, 448
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 5 cut(s) 80, 122, 135, 225, 292
SspMI CTAG 1 cut(s) 312
StuI AGGCCT 1 cut(s) 158
TaaI ACNGT 3 cut(s) 275, 281, 332
TaiI ACGT 2 cut(s) 375, 448
TaqI TCGA 1 cut(s) 183
TasI AATT 4 cut(s) 54, 208, 295, 448
TfiI GAWTC 2 cut(s) 147, 479
Tru1I TTAA 2 cut(s) 57, 414
Tru9I TTAA 2 cut(s) 57, 414
TseFI GTSAC 2 cut(s) 275, 346
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 2 cut(s) 275, 346
TspGWI ACGGA 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 175
XbaI TCTAGA 1 cut(s) 311
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.