Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Forward (+)

26903900 .. 26915925

Gene Structure 12026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0272700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4515 bp

ATGGACCACAGGCGCCAATCCAAGGACTCTCTCTCCTCCTCCTACTCCAACCTCTTCAATCTTGAGCTTCCACAGCCAGATGATGATTTTGATTATTACGGCAATAGTAGTCAGGATGAGAGCAGAGGTAGCCAAGGTGGAGCTGCTGGTAATGGGATGATGTCCGACCGCGAACTGAATTCAGTAAAGAAAAGGAGGCGGTCTCAAAACAGTGATTACGAGGAGGATGACAGTTATTACGGGACGCACATTACGGAGGACAAGTATAGATCAATGCTTGGAGAACACATTCAGAAGTACAAAAGGAGGTTCAAGGATTCCCCGTCAAGTCCTGCACCAATCCAGATGGGGATTCCGGTTTCAAAGGGTAATAAGGGTTCGAAATCGAGGAAACTGGCGAATGAGATCCGAGGAGGGTTTTATGAAATGGAAACCACGTCTGAGTGGCTCAATGATACTATTCCTCAGAAACCAGGGAACTACCATGATGCTGATTTTGCGCCACAAAGTGCCGCTGATAGAGTAATATATGAACCTCCTTATCTGGATATTGGAGATGGTTTCACATACAAGATTCCACCAATTTATGATAAACTGGTGACATCTTTACACTTGCCGAGCTTTTCTGATTTTCGGGTGGAGGAAGTTTACTTAAAAGGTACATTGGATTTGGGATCCTTAGCAGAAATGATGGGTAGCGATAAAAGGTTTGGTCCAAAAAATCGGGCAGGAATGGGGGAGCCCTATCCCCAGTATGAGTCCCTTCAGGCAAGATTGAAGGCCTTGTCCACTTCTACCTCTGCTCAAAAGTTCAGCCTCAAAGTTTCTGATATTGGGTTGAATTCCTCCATCCCAGAGGGGGCAGCTGGAAGTATAAAGAGGTCTATTTTGTCCGAGGGTGGTGTATTGCAAGTCTACTATGTGAAGGTTTTGGAGAAAGGAGACACATATGAGATAATTGAACGAAGCCTACCCAAGAAGCAAAAGGTACAGAAAGATCCTTCTCAGATTGAGAAGGAGGAAATGGAAAGGATTGGAAGAGTTTGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGAATGTTTACTACTTTTCACCGCAAGCAACTAATTGATGCCAAGAGGGTTTCAGAGAACTGTCAAAGAGAGGTAAAAATGAAGGTGAGTAGATCACTTAAAGTGATGAGGGGTGCTGCAATTCGCACAAGGAAACTAGCCAGAGACATGCTACTGCTTTGGAAGAGAATAGACAAAGAGATGGCAGAAGTGAGGAAGAAAGAGGAAAAAGAAGCTATTGAAATGCGCAAGCGTCTGGAGGAGGAAAGAGAAGCAAAGAGACAGGAGCAAAGGCTCAATTTTCTCATAAAACAAACCGAACTTTACAGTCACTTCATGCAGAACAAGTTAAGTTCACAGCCATCTGAAGACTTGCCTGTAGGAGACGAAAACCAAGATGACCAAGATGTATCTCCAAGCTCCTCAGATATTGAGAATATTGAAGAAGATTCTGAGGAAGCTGAACTGAAGAAGGAGGCATTAAAAGCTGCTCAAGATGCAGTTTCAAAGCAGAAAAAGTTAACTAGCGCATTTGATGACGAGTGTCTGAAACTGCGTGAAGCCTCTGAACCTGAGGCACCACAGGATGTTGCTGGAGCTAATAACATTGATCTGCATAACCCTTCCACTATGCCTGTTACGTCAACCGTTCAGACACCAGAGTTGTTCAAAGGTTCCCTTAAAGAATACCAGCTAAAAGGCCTCCAGTGGCTGGTTAATTGTTATGAGCAGGGTTTAAATGGCATCCTTGCTGATGAGATGGGCCTGGGTAAGACCATCCAGGCCATGGCATTTTTGGCTCATTTGGCTGAGGAGAAAAATATATGGGGGCCTTTTCTGGTTGTTGCTCCTGCTTCTGTCTTGAACAACTGGGCTGATGAAATTAGTCGTTTCTGCCCCGACTTGAAAACTCTTCCGTATTGGGGTGGCCTTCAAGAGCGTACGATACTTAGGAAGAAGATCAACGCTAAGAAACTTTACCGTAGGGATGCTGGGTTTCACATTCTCATTACCAGCTACCAGTTGCTAGTGGCTGATGAGAAGTCTTTCCGGCGTGTGAAATGGCAATATATGGTATTGGATGAAGCACAAGCTATCAAAAGTTCTAACAGTATAAGATGGAAGACACTGCTCAGCTTTAATTGTCGAAATCGTTTGCTGCTTACTGGTACACCTATCCAGAATAATATGGCAGAGTTGTGGGCCCTACTACATTTCATTATGCCAACCTTATTTGACAGTCATGAACAATTCAATGAGTGGTTCTCTAAAGGAATTGAAAATCATGCGGAACATGGGGGTACTTTGAACGAGCACCAGCTTAACAGATTGCATTCGATATTGAAGCCATTCATGCTCCGTCGAGTTAAGACAGATGTGATTTCTGAGCTGACCAGGAAAACTGAAGTTACTGTGCACTGCAAGTTGAGTTCTCGGCAACAAGCTTTTTATCAAGCTATCAAAAACAAGATATCTCTTGCTGAGCTGTTTGACAACAATCGTGGGCATCTTAATGAGAAGAAAATTTTGAACTTAATGAATATTGTCATTCAGCTAAGAAAAGTCTGCAACCATCCTGAGTTATTTGAGAGGAATGAAGGAAGCACATATCTTCACTTTGGTGAGATTTCAAATTCTCTTCTTCCTCCGCCATTTGGGGAGTTGGAGGACGTACACTACTCGGGAGGTCAAAATCCTATAACATACAAGGTCCCCAAACTTTTATATCAAGAAATACTCCAGAATTCTGAAACGTTTTGCTCTGCAGTTCGGCATGGTGTCTACAGTGAATCTTTTCAGAAACATTTTAACATATTTTCACCGCAAAATGTGTATCGATCAATATTCTTGCAAGAGAACGACTCAGATGAGTTGTCGGTTGGAAGTGGAACGTTTGGTTTTACTCATCTGATGGATCTGTCCCCTGCAGAGGTTGCATTTTTAGGAACTGGTTCTTTTATGGAGCGGCTAATGTTTTCCATTATGAGATGGGACCGGCAGTTTTTGGATGGATTGATAGACACACTAATGGAAACCATGGATGATGATTCTGAATGCAGCTTTCTTGAGAGTGGAAAAGTGAGAGCTGTTACACGTATGTTGCTGATGCCTTCAAGATCTATAACTACCATCTTTCAGAAGAAATTGGCCTCTGGACCTGGTGGTACTCCATTTGAGGGTCTAGTTGTCTCTCATCGGGACAGGCTTCTCTCTAATATTAGGCTTCTCCGTTCGACATACACATTCATCCCCCGAACTAGAGCTCCCCCAGTTAATGCCCATTGCTCAGATCGAAACTTCACTTACAAAATGAGTGAAGAACAACAGTACCCCTGGGTGAAGAGGTTGTTTTCTGGCTTTGCGCGAACATCTGACTACAATGGACCCAGAAAACCTGAGACTCCTCATCATCTAATACAAGAGATTGATTCTGAACTGCCTGTTGCACATTCAGCTCTTCAGTTAACATACAGAATTTTTGGGTCTTGTCCTCCAATGCAAAGCTTCGACCCGTCAAAAATGCTCACTGATTCGGGGAAACTTCAGACACTTGATATATTGTTGAAACGCTTGAGGGCAGAAAATCATCGTGTTCTCTTGTTTGCACAGATGACAAAGATGCTGAATATTCTTGAGGACTACATGAACTACAGGAAATATAGATACCTCAGACTCGATGGATCTTCCACCATTATGGATCGTAGAGACATGGTCAGAGACTTCCAGCAACGAAGTGATATTTTTGTTTTCTTGCTGAGTACAAGAGCTGGTGGACTAGGCATTAACTTGACAGCTGCAGATACTGTCATATTTTATGAAAGTGATTGGAATCCGACCCTGGATCTACAGGCAATGGATAGAGCTCATCGGTTGGGCCAGACAAAAGATGTTACTGTCTACCGCCTAATTTGTAAAGAAACGGTTGAGGAGAAGATTCTGCAAAGAGCAAGTCAGAAAAATACTGTGCAGCAGCTTGTAATGATGGGTGGTCATGTTCAGGGTGACCTTTTGGCTCCCGAGGATGTTGTATCTCTACTTCTCGATGATGCCCAGTTGGAGCAGAAATTAAGAGAAGCTCCATCACAGGTTAAGGATAGACAAAAGAAGAAACAGACAAAGGGTATACGGGTAGATGCAGAAGGTGATGCCTCTTTGGAAGATTTAACAAACACTGCTGCATCACAAGGTACTGGAAATGAGGAATCTCCGGATGTTGAAAGATCAAAATCCAATAATAAAAAGAGGAAAACCGTGTCTGACAAGCATACTCCGCGGCCGAAGAATCCTCAAAGTATGGATGAACCAGAGGGCTATGAATTGGAGGATTCCTTACAAAATACTGATCCACAAGGTACAAGACCCAAGAGGCCAAAGAGGTCAAAGAAGAGTGTAAATGAAACTCTTGAACCTGCATTTACAGCGGCATCCCCTGTGGTCCCGAGGCAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

1504

Amino Acids

171.95

Weight (kDa)

8.11

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBINO	PF13892	343 - 473	1.1e-44	DNA-binding domain
ResIII	PF04851	580 - 747	1.6e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	584 - 882	1.9e-85	SNF2-related domain
Helicase_C	PF00271	1203 - 1313	2.6e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1310
Acc36I	ACCTGC	1 cut(s)	4480
AccB1I	GGYRCC	2 cut(s)	12, 1639
AccB7I	CCANNNNNTGG	2 cut(s)	1774, 1849
AccBSI	CCGCTC	1 cut(s)	3028
AccI	GTMKAC	4 cut(s)	915, 2844, 3960, 4186
AccII	CGCG	3 cut(s)	171, 3427, 4336
AccIII	TCCGGA	1 cut(s)	4270
AclI	AACGTT	2 cut(s)	2816, 2954
AclWI	GGATC	9 cut(s)	400, 669, 682, 992, 2985, 3751, 3768, 3912, 4400
AcoI	YGGCCR	1 cut(s)	4337
AcsI	RAATTY	6 cut(s)	178, 841, 2586, 2695, 2806, 3537
AcuI	CTGAAG	6 cut(s)	749, 1449, 1550, 2487, 3506, 3590
AcyI	GRCGYC	1 cut(s)	13
AdeI	CACNNNGTG	1 cut(s)	509
AfiI	CCNNNNNNNGG	8 cut(s)	22, 859, 1774, 1849, 1985, 2717, 2992, 3239
AflIII	ACRYGT	1 cut(s)	3155
AjiI	CACGTC	1 cut(s)	438
AjnI	CCWGG	7 cut(s)	472, 1827, 1842, 2456, 3220, 3395, 3900
AleI	CACNNNNGTG	1 cut(s)	2682
AloI	GAACNNNNNNTCC	2 cut(s)	3310, 3342
Alw21I	GWGCWC	4 cut(s)	2379, 2481, 3328, 3928
Alw44I	GTGCAC	1 cut(s)	2477
AlwI	GGATC	9 cut(s)	400, 669, 682, 992, 2985, 3751, 3768, 3912, 4400
AlwNI	CAGNNNCTG	2 cut(s)	1774, 3866
Ama87I	CYCGRG	3 cut(s)	2743, 4079, 4501
Aor13HI	TCCGGA	1 cut(s)	4270
ApaI	GGGCCC	1 cut(s)	2269
ApaLI	GTGCAC	1 cut(s)	2477
ApoI	RAATTY	6 cut(s)	178, 841, 2586, 2695, 2806, 3537
ArsI	GACNNNNNNTTYG	2 cut(s)	3997, 4029
Asp700I	GAANNNNTTC	5 cut(s)	288, 2108, 2411, 2856, 3013
AspLEI	GCGC	5 cut(s)	15, 502, 1311, 1592, 3427
AsuHPI	GGTGA	8 cut(s)	610, 1094, 1180, 2696, 2874, 3412, 4076, 4217
AsuII	TTCGAA	1 cut(s)	380
AvaI	CYCGRG	3 cut(s)	2743, 4079, 4501
AvaII	GGWCC	7 cut(s)	4, 713, 2773, 3055, 3218, 3446, 4498
AxyI	CCTNAGG	1 cut(s)	1635
BaeGI	GKGCMC	2 cut(s)	2269, 2481
BaeI	ACNNNNGTAYC	2 cut(s)	3374, 3407
BamHI	GGATCC	1 cut(s)	674
BanI	GGYRCC	2 cut(s)	12, 1639
BanII	GRGCYC	4 cut(s)	744, 2269, 3328, 3928
BarI	GAAGNNNNNNTAC	2 cut(s)	4083, 4115
BbsI	GAAGAC	2 cut(s)	1437, 2192
Bbv12I	GWGCWC	4 cut(s)	2379, 2481, 3328, 3928
BbvCI	CCTCAGC	1 cut(s)	1872
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	7 cut(s)	474, 1829, 1844, 2458, 3222, 3397, 3902
BfaI	CTAG	6 cut(s)	1220, 1587, 2090, 3245, 3321, 3839
BfmI	CTRYAG	7 cut(s)	1440, 2826, 2845, 2988, 3712, 3858, 3908
BfoI	RGCGCY	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	4480
BglII	AGATCT	1 cut(s)	3179
BlpI	GCTNAGC	2 cut(s)	2195, 2544
Bme1390I	CCNGG	7 cut(s)	474, 1829, 1844, 2458, 3222, 3397, 3902
Bme18I	GGWCC	7 cut(s)	4, 713, 2773, 3055, 3218, 3446, 4498
BmeT110I	CYCGRG	3 cut(s)	2743, 4079, 4501
BmgBI	CACGTC	1 cut(s)	438
BmrFI	CCNGG	7 cut(s)	474, 1829, 1844, 2458, 3222, 3397, 3902
BmrI	ACTGGG	4 cut(s)	745, 1942, 3326, 4108
BmuI	ACTGGG	4 cut(s)	745, 1942, 3326, 4108
BoxI	GACNNNNGTC	1 cut(s)	1605
BpiI	GAAGAC	2 cut(s)	1437, 2192
BplI	GAGNNNNNCTC	6 cut(s)	187, 219, 2312, 2344, 2909, 2941
BpmI	CTGGAG	4 cut(s)	1340, 1677, 1751, 2786
Bpu10I	CCTNAGC	2 cut(s)	679, 1872
Bpu1102I	GCTNAGC	2 cut(s)	2195, 2544
Bpu14I	TTCGAA	1 cut(s)	380
BpuEI	CTTGAG	5 cut(s)	83, 1539, 3149, 3655, 3716
Bsa29I	ATCGAT	1 cut(s)	2899
BsaAI	YACGTR	1 cut(s)	3158
BsaBI	GATNNNNATC	2 cut(s)	3891, 4288
BsaHI	GRCGYC	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	207
BsaWI	WCCGGW	2 cut(s)	355, 4270
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 248, 278, 3310, 3340
Bsc4I	CCNNNNNNNGG	8 cut(s)	22, 859, 1774, 1849, 1985, 2717, 2992, 3239
Bse118I	RCCGGY	1 cut(s)	3057
Bse21I	CCTNAGG	1 cut(s)	1635
Bse3DI	GCAATG	2 cut(s)	3343, 3921
Bse8I	GATNNNNATC	2 cut(s)	3891, 4288
BseAI	TCCGGA	1 cut(s)	4270
BseBI	CCWGG	7 cut(s)	474, 1829, 1844, 2458, 3222, 3397, 3902
BseCI	ATCGAT	1 cut(s)	2899
BseJI	GATNNNNATC	2 cut(s)	3891, 4288
BseLI	CCNNNNNNNGG	8 cut(s)	22, 859, 1774, 1849, 1985, 2717, 2992, 3239
BseMI	GCAATG	2 cut(s)	3343, 3921
BseRI	GAGGAG	9 cut(s)	25, 28, 236, 426, 1337, 1474, 1889, 3456, 4004
BseSI	GKGCMC	2 cut(s)	2269, 2481
BseX3I	CGGCCG	1 cut(s)	4337
BseYI	CCCAGC	1 cut(s)	2054
BsgI	GTGCAG	2 cut(s)	318, 4049
Bsh1236I	CGCG	3 cut(s)	171, 3427, 4336
Bsh1285I	CGRYCG	2 cut(s)	169, 4340
BshNI	GGYRCC	2 cut(s)	12, 1639
BshVI	ATCGAT	1 cut(s)	2899
BsiEI	CGRYCG	2 cut(s)	169, 4340
BsiHKAI	GWGCWC	4 cut(s)	2379, 2481, 3328, 3928
BsiHKCI	CYCGRG	3 cut(s)	2743, 4079, 4501
BsiSI	CCGG	4 cut(s)	356, 2113, 3058, 4271
BsiWI	CGTACG	1 cut(s)	2003
BslFI	GGGAC	7 cut(s)	256, 745, 2759, 2968, 3068, 3275, 4484
BslI	CCNNNNNNNGG	8 cut(s)	22, 859, 1774, 1849, 1985, 2717, 2992, 3239
BsmBI	CGTCTC	1 cut(s)	1440
BsmFI	GGGAC	7 cut(s)	256, 745, 2759, 2968, 3068, 3275, 4484
BsmI	GAATGC	2 cut(s)	2395, 3122
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	3 cut(s)	2743, 4079, 4501
Bsp119I	TTCGAA	1 cut(s)	380
Bsp120I	GGGCCC	1 cut(s)	2265
Bsp1286I	GDGCHC	6 cut(s)	744, 2269, 2379, 2481, 3328, 3928
Bsp13I	TCCGGA	1 cut(s)	4270
Bsp1720I	GCTNAGC	2 cut(s)	2195, 2544
Bsp19I	CCATGG	2 cut(s)	1848, 3099
BspDI	ATCGAT	1 cut(s)	2899
BspEI	TCCGGA	1 cut(s)	4270
BspFNI	CGCG	3 cut(s)	171, 3427, 4336
BspHI	TCATGA	1 cut(s)	2305
BspMAI	CTGCAG	3 cut(s)	2830, 2992, 3862
BspMI	ACCTGC	1 cut(s)	4480
BspPI	GGATC	9 cut(s)	400, 669, 682, 992, 2985, 3751, 3768, 3912, 4400
BspQI	GCTCTTC	1 cut(s)	3525
BspT104I	TTCGAA	1 cut(s)	380
BspT107I	GGYRCC	2 cut(s)	12, 1639
BspTNI	GGTCTC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	3028
BsrDI	GCAATG	2 cut(s)	3343, 3921
BsrFI	RCCGGY	1 cut(s)	3057
BssAI	RCCGGY	1 cut(s)	3057
BssNAI	GTATAC	1 cut(s)	4187
BssNI	GRCGYC	1 cut(s)	13
BssT1I	CCWWGG	4 cut(s)	21, 133, 1848, 3099
Bst1107I	GTATAC	1 cut(s)	4187
Bst2UI	CCWGG	7 cut(s)	474, 1829, 1844, 2458, 3222, 3397, 3902
Bst6I	CTCTTC	9 cut(s)	59, 1033, 1057, 1241, 1980, 2706, 3398, 3525, 4442
BstACI	GRCGYC	1 cut(s)	13
BstAPI	GCANNNNNTGC	1 cut(s)	2996
BstBAI	YACGTR	1 cut(s)	3158
BstBI	TTCGAA	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	1109, 1313
BstDSI	CCRYGG	3 cut(s)	1848, 3099, 4334
BstEII	GGTNACC	1 cut(s)	4064
BstFNI	CGCG	3 cut(s)	171, 3427, 4336
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	5 cut(s)	15, 502, 1311, 1592, 3427
BstMCI	CGRYCG	2 cut(s)	169, 4340
BstNI	CCWGG	7 cut(s)	474, 1829, 1844, 2458, 3222, 3397, 3902
BstNSI	RCATGY	1 cut(s)	1234
BstPAI	GACNNNNGTC	1 cut(s)	1605
BstPI	GGTNACC	1 cut(s)	4064
BstSCI	CCNGG	7 cut(s)	472, 1827, 1842, 2456, 3220, 3395, 3900
BstSFI	CTRYAG	7 cut(s)	1440, 2826, 2845, 2988, 3712, 3858, 3908
BstSLI	GKGCMC	2 cut(s)	2269, 2481
BstUI	CGCG	3 cut(s)	171, 3427, 4336
BstV2I	GAAGAC	2 cut(s)	1437, 2192
BstX2I	RGATCY	7 cut(s)	405, 674, 997, 2977, 3179, 3743, 3904
BstXI	CCANNNNNNTGG	1 cut(s)	3757
BstYI	RGATCY	7 cut(s)	405, 674, 997, 2977, 3179, 3743, 3904
BstZ17I	GTATAC	1 cut(s)	4187
BstZI	CGGCCG	1 cut(s)	4337
Bsu15I	ATCGAT	1 cut(s)	2899
Bsu36I	CCTNAGG	1 cut(s)	1635
BsuTUI	ATCGAT	1 cut(s)	2899
BtgI	CCRYGG	3 cut(s)	1848, 3099, 4334
BtrI	CACGTC	1 cut(s)	438
BtsI	GCAGTG	3 cut(s)	2189, 2479, 4233
BtsIMutI	CAGTG	7 cut(s)	217, 1775, 2189, 2479, 2854, 3588, 4233
BveI	ACCTGC	1 cut(s)	4480
Cac8I	GCNNGC	2 cut(s)	1109, 1313
CaiI	CAGNNNCTG	2 cut(s)	1774, 3866
CciI	TCATGA	1 cut(s)	2305
CfoI	GCGC	5 cut(s)	15, 502, 1311, 1592, 3427
Cfr10I	RCCGGY	1 cut(s)	3057
Cfr42I	CCGCGG	1 cut(s)	4337
ClaI	ATCGAT	1 cut(s)	2899
CseI	GACGC	2 cut(s)	253, 1304
CsiI	ACCWGGT	1 cut(s)	3220
CspCI	CAANNNNNGTGG	2 cut(s)	2545, 2580
DinI	GGCGCC	1 cut(s)	14
DraI	TTTAAA	1 cut(s)	1800
DraIII	CACNNNGTG	1 cut(s)	509
EaeI	YGGCCR	1 cut(s)	4337
EagI	CGGCCG	1 cut(s)	4337
Eam1104I	CTCTTC	9 cut(s)	59, 1033, 1057, 1241, 1980, 2706, 3398, 3525, 4442
EarI	CTCTTC	9 cut(s)	59, 1033, 1057, 1241, 1980, 2706, 3398, 3525, 4442
EciI	GGCGGA	1 cut(s)	2700
Ecl136II	GAGCTC	2 cut(s)	3326, 3926
EclXI	CGGCCG	1 cut(s)	4337
Eco130I	CCWWGG	4 cut(s)	21, 133, 1848, 3099
Eco147I	AGGCCT	2 cut(s)	782, 1764
Eco24I	GRGCYC	4 cut(s)	744, 2269, 3328, 3928
Eco31I	GGTCTC	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	2535
Eco47I	GGWCC	7 cut(s)	4, 713, 2773, 3055, 3218, 3446, 4498
Eco52I	CGGCCG	1 cut(s)	4337
Eco53kI	GAGCTC	2 cut(s)	3326, 3926
Eco57I	CTGAAG	6 cut(s)	749, 1449, 1550, 2487, 3506, 3590
Eco81I	CCTNAGG	1 cut(s)	1635
Eco88I	CYCGRG	3 cut(s)	2743, 4079, 4501
Eco91I	GGTNACC	1 cut(s)	4064
EcoICRI	GAGCTC	2 cut(s)	3326, 3926
EcoO109I	RGGNCCY	3 cut(s)	1892, 2266, 2773
EcoO65I	GGTNACC	1 cut(s)	4064
EcoRI	GAATTC	3 cut(s)	178, 841, 2806
EcoRII	CCWGG	7 cut(s)	472, 1827, 1842, 2456, 3220, 3395, 3900
EcoRV	GATATC	1 cut(s)	2535
EcoT14I	CCWWGG	4 cut(s)	21, 133, 1848, 3099
EcoT38I	GRGCYC	4 cut(s)	744, 2269, 3328, 3928
EgeI	GGCGCC	1 cut(s)	14
EheI	GGCGCC	1 cut(s)	14
ErhI	CCWWGG	4 cut(s)	21, 133, 1848, 3099
Esp3I	CGTCTC	1 cut(s)	1440
FalI	AAGNNNNNCTT	2 cut(s)	1725, 1757
FaqI	GGGAC	7 cut(s)	256, 745, 2759, 2968, 3068, 3275, 4484
FauNDI	CATATG	1 cut(s)	949
FblI	GTMKAC	4 cut(s)	915, 2844, 3960, 4186
FriOI	GRGCYC	4 cut(s)	744, 2269, 3328, 3928
FspBI	CTAG	6 cut(s)	1220, 1587, 2090, 3245, 3321, 3839
FspI	TGCGCA	1 cut(s)	1310
GlaI	GCGC	5 cut(s)	14, 501, 1310, 1591, 3426
GsaI	CCCAGC	1 cut(s)	2058
GsuI	CTGGAG	4 cut(s)	1340, 1677, 1751, 2786
HaeII	RGCGCY	1 cut(s)	16
HapII	CCGG	4 cut(s)	356, 2113, 3058, 4271
HgaI	GACGC	2 cut(s)	253, 1304
HhaI	GCGC	5 cut(s)	15, 502, 1311, 1592, 3427
Hin1I	GRCGYC	1 cut(s)	13
Hin6I	GCGC	5 cut(s)	13, 500, 1309, 1590, 3425
HinP1I	GCGC	5 cut(s)	13, 500, 1309, 1590, 3425
HincII	GTYRAC	3 cut(s)	1584, 1707, 3528
HindII	GTYRAC	3 cut(s)	1584, 1707, 3528
HindIII	AAGCTT	2 cut(s)	2505, 3565
HpaI	GTTAAC	2 cut(s)	1584, 3528
HpaII	CCGG	4 cut(s)	356, 2113, 3058, 4271
HphI	GGTGA	8 cut(s)	610, 1094, 1180, 2696, 2874, 3412, 4076, 4217
Hpy99I	CGWCG	1 cut(s)	2427
HpyCH4IV	ACGT	6 cut(s)	437, 1703, 2733, 2816, 2954, 3157
HpySE526I	ACGT	6 cut(s)	437, 1703, 2733, 2816, 2954, 3157
Hsp92I	GRCGYC	1 cut(s)	13
HspAI	GCGC	5 cut(s)	13, 500, 1309, 1590, 3425
KasI	GGCGCC	1 cut(s)	12
Kpn2I	TCCGGA	1 cut(s)	4270
KspAI	GTTAAC	2 cut(s)	1584, 3528
KspI	CCGCGG	1 cut(s)	4337
LguI	GCTCTTC	1 cut(s)	3525
MabI	ACCWGGT	1 cut(s)	3220
MaeI	CTAG	6 cut(s)	1220, 1587, 2090, 3245, 3321, 3839
MaeII	ACGT	6 cut(s)	437, 1703, 2733, 2816, 2954, 3157
MaeIII	GTNAC	7 cut(s)	598, 1391, 1699, 2470, 3151, 3952, 4064
MbiI	CCGCTC	1 cut(s)	3028
MflI	RGATCY	7 cut(s)	405, 674, 997, 2977, 3179, 3743, 3904
MhlI	GDGCHC	6 cut(s)	744, 2269, 2379, 2481, 3328, 3928
Mly113I	GGCGCC	1 cut(s)	13
MlyI	GAGTC	5 cut(s)	20, 767, 2918, 3457, 3729
MmeI	TCCRAC	6 cut(s)	72, 189, 2706, 2923, 3920, 4098
MroI	TCCGGA	1 cut(s)	4270
MroXI	GAANNNNTTC	5 cut(s)	288, 2108, 2411, 2856, 3013
MslI	CAYNNNNRTG	4 cut(s)	2574, 2682, 3089, 3755
MspA1I	CMGCKG	5 cut(s)	515, 866, 3857, 4336, 4484
MspI	CCGG	4 cut(s)	356, 2113, 3058, 4271
MspR9I	CCNGG	7 cut(s)	474, 1829, 1844, 2458, 3222, 3397, 3902
Mva1269I	GAATGC	2 cut(s)	2395, 3122
MvaI	CCWGG	7 cut(s)	474, 1829, 1844, 2458, 3222, 3397, 3902
MvnI	CGCG	3 cut(s)	171, 3427, 4336
NarI	GGCGCC	1 cut(s)	13
NcoI	CCATGG	2 cut(s)	1848, 3099
NdeI	CATATG	1 cut(s)	949
NmeAIII	GCCGAG	2 cut(s)	642, 2476
NmuCI	GTSAC	3 cut(s)	598, 1391, 4064
NsbI	TGCGCA	1 cut(s)	1310
NspI	RCATGY	1 cut(s)	1234
NspV	TTCGAA	1 cut(s)	380
OliI	CACNNNNGTG	1 cut(s)	2682
PagI	TCATGA	1 cut(s)	2305
PasI	CCCWGGG	1 cut(s)	3396
PceI	AGGCCT	2 cut(s)	782, 1764
PciSI	GCTCTTC	1 cut(s)	3525
PctI	GAATGC	2 cut(s)	2395, 3122
PdmI	GAANNNNTTC	5 cut(s)	288, 2108, 2411, 2856, 3013
Pfl23II	CGTACG	1 cut(s)	2003
PflFI	GACNNNGTC	1 cut(s)	3773
PflMI	CCANNNNNTGG	2 cut(s)	1774, 1849
PleI	GAGTC	5 cut(s)	20, 766, 2918, 3457, 3729
PluTI	GGCGCC	1 cut(s)	16
PpsI	GAGTC	5 cut(s)	20, 766, 2918, 3457, 3729
Ppu21I	YACGTR	1 cut(s)	3158
PpuMI	RGGWCCY	1 cut(s)	2773
PshAI	GACNNNNGTC	1 cut(s)	1605
Psp124BI	GAGCTC	2 cut(s)	3328, 3928
Psp1406I	AACGTT	2 cut(s)	2816, 2954
Psp5II	RGGWCCY	1 cut(s)	2773
Psp6I	CCWGG	7 cut(s)	472, 1827, 1842, 2456, 3220, 3395, 3900
PspEI	GGTNACC	1 cut(s)	4064
PspFI	CCCAGC	1 cut(s)	2054
PspGI	CCWGG	7 cut(s)	472, 1827, 1842, 2456, 3220, 3395, 3900
PspLI	CGTACG	1 cut(s)	2003
PspOMI	GGGCCC	1 cut(s)	2265
PspPPI	RGGWCCY	1 cut(s)	2773
PsrI	GAACNNNNNNTAC	4 cut(s)	361, 393, 954, 986
PstI	CTGCAG	3 cut(s)	2830, 2992, 3862
PstNI	CAGNNNCTG	2 cut(s)	1774, 3866
PsuI	RGATCY	7 cut(s)	405, 674, 997, 2977, 3179, 3743, 3904
PsyI	GACNNNGTC	1 cut(s)	3773
PvuII	CAGCTG	2 cut(s)	866, 3857
RseI	CAYNNNNRTG	4 cut(s)	2574, 2682, 3089, 3755
SacI	GAGCTC	2 cut(s)	3328, 3928
SacII	CCGCGG	1 cut(s)	4337
SapI	GCTCTTC	1 cut(s)	3525
SchI	GAGTC	5 cut(s)	20, 767, 2918, 3457, 3729
ScrFI	CCNGG	7 cut(s)	474, 1829, 1844, 2458, 3222, 3397, 3902
SduI	GDGCHC	6 cut(s)	744, 2269, 2379, 2481, 3328, 3928
SexAI	ACCWGGT	1 cut(s)	3220
SfcI	CTRYAG	7 cut(s)	1440, 2826, 2845, 2988, 3712, 3858, 3908
SfoI	GGCGCC	1 cut(s)	14
Sfr303I	CCGCGG	1 cut(s)	4337
SfuI	TTCGAA	1 cut(s)	380
SgrBI	CCGCGG	1 cut(s)	4337
SinI	GGWCC	7 cut(s)	4, 713, 2773, 3055, 3218, 3446, 4498
SmiMI	CAYNNNNRTG	4 cut(s)	2574, 2682, 3089, 3755
SmlI	CTYRAG	5 cut(s)	62, 1554, 3128, 3634, 3695
SmoI	CTYRAG	5 cut(s)	62, 1554, 3128, 3634, 3695
SseBI	AGGCCT	2 cut(s)	782, 1764
SspDI	GGCGCC	1 cut(s)	12
SspI	AATATT	5 cut(s)	1501, 2605, 2907, 3280, 3691
SspMI	CTAG	6 cut(s)	1220, 1587, 2090, 3245, 3321, 3839
SstI	GAGCTC	2 cut(s)	3328, 3928
StuI	AGGCCT	2 cut(s)	782, 1764
StyD4I	CCNGG	7 cut(s)	472, 1827, 1842, 2456, 3220, 3395, 3900
StyI	CCWWGG	4 cut(s)	21, 133, 1848, 3099
TaiI	ACGT	6 cut(s)	440, 1706, 2736, 2819, 2957, 3160
TatI	WGTACW	2 cut(s)	297, 3821
TauI	GCSGC	4 cut(s)	515, 3031, 4339, 4487
TscAI	CASTG	7 cut(s)	217, 1775, 2196, 2486, 2854, 3595, 4240
TseFI	GTSAC	3 cut(s)	598, 1391, 4064
Tsp45I	GTSAC	3 cut(s)	598, 1391, 4064
TspGWI	ACGGA	4 cut(s)	269, 1968, 2411, 3281
TspRI	CASTG	7 cut(s)	217, 1775, 2196, 2486, 2854, 3595, 4240
Tth111I	GACNNNGTC	1 cut(s)	3773
Van91I	CCANNNNNTGG	2 cut(s)	1774, 1849
VneI	GTGCAC	1 cut(s)	2477
VpaK11BI	GGWCC	7 cut(s)	4, 713, 2773, 3055, 3218, 3446, 4498
XapI	RAATTY	6 cut(s)	178, 841, 2586, 2695, 2806, 3537
XceI	RCATGY	1 cut(s)	1234
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1846, 1855
XmiI	GTMKAC	4 cut(s)	915, 2844, 3960, 4186
XmnI	GAANNNNTTC	5 cut(s)	288, 2108, 2411, 2856, 3013
XspI	CTAG	6 cut(s)	1220, 1587, 2090, 3245, 3321, 3839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.