Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002490.1

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Forward (+)

75252 .. 75521

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002490.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atggggctatcaccggcggtgtttttcacaatcgctaggatggtggtcgtcatttacagatatgttaccacaatgtttatggctctcgaagattacaacaatcctccggtggtgagtagtgctaattcagaattagtgaacaagtatttcaatcccaagatcgccatgacgccaagctcaatccaagtcgaggatatgatggagcaagagcttagagcatatgatgggtctgaccccaataagcccattcttatgaccatcaaagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

89

Amino Acids

10.04

Weight (kDa)

4.85

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	3 cut(s)	177, 211, 266
AluI	AGCT	3 cut(s)	177, 211, 266
AsuHPI	GGTGA	2 cut(s)	3, 124
BccI	CCATC	4 cut(s)	34, 193, 218, 266
BfaI	CTAG	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	13
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	14, 107
BslI	CCNNNNNNNGG	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssMI	GATC	1 cut(s)	159
BssNI	GRCGYC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	212, 267
BstF5I	GGATG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	13
CseI	GACGC	1 cut(s)	178
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	6 cut(s)	7, 83, 177, 211, 244, 266
CviKI_1	RGCY	6 cut(s)	7, 83, 177, 211, 244, 266
DdeI	CTNAG	2 cut(s)	212, 267
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
FaeI	CATG	1 cut(s)	169
FaiI	YATR	7 cut(s)	63, 80, 167, 197, 220, 222, 254
FatI	CATG	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	220
FokI	GGATG	1 cut(s)	52
FspBI	CTAG	1 cut(s)	36
HapII	CCGG	2 cut(s)	14, 107
HgaI	GACGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	264
HpaII	CCGG	2 cut(s)	14, 107
HphI	GGTGA	2 cut(s)	3, 124
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	130, 232
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	212, 267
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	2 cut(s)	27, 120
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	1 cut(s)	101
MluCI	AATT	2 cut(s)	124, 131
MnlI	CCTC	2 cut(s)	114, 184
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	2 cut(s)	14, 107
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	251
Sau3AI	GATC	1 cut(s)	159
SetI	ASST	3 cut(s)	179, 213, 268
SgrAI	CRCCGGYG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	124, 131
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	36
TaqI	TCGA	2 cut(s)	87, 189
TasI	AATT	2 cut(s)	124, 131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.