Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Forward (+)

21101144 .. 21101812

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0121500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGACTTGCTTCTTCTCAAAAGGGTCTATTCTAGTCATTCTCCTTTTAGCAATTTTCTTGGTTAGTGAAGCTCACCAATGTCGTCCAAGTGGAAGAATCAGAGGAAGGAAGCCCCCTCCTGGACAATGTAACCAGCAGGATGACTCTGACTGCTGTAAAGCTGGAAAAATGTACCCAACCTACACTTGCTCACCACCAATGTCCGGTAACACCAAGGCATACCTCACTCTCAATAGCTTTGAGGCAGGTGGTGACGGAGGAGGCCCATCCGAATGTGACGGCAAGTATCACAATGACAACACTCCAGTTGTTGCATTATCCACAGGATGGTACAACGGTGGATCAAGGTGCCTTAACAACATCAGCATTAGTGGTAATGGGCGTAGCGTGGTGGCCATGGTGGTGGATGAGTGCGACTCTACTGAGGGATGTGATGCAGACCATGATTATCAGCCTCCTTGTCCCAACAACATTGTTGATGCCTCCAAGGCCGTCTGGAAAGCCTTAGGTGTATCTGAGGACAACTGGGGTGGCTTGGATATCACATGGCCTGGTCCGATGCTTAGTTACATTAGAGTTTCTTCAAGTGCTTATTTTGTTTCTTATTTGGGGTTTGATTTTGCTTATTTTTGTTGTATGTGGGATGTATATATGATATGTACATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

222

Amino Acids

24.07

Weight (kDa)

4.82

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KWL1	PF24300	21 - 183	6.5e-64	Kiwellin-1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	348
AccB7I	CCANNNNNTGG	1 cut(s)	327
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	393
AfaI	GTAC	3 cut(s)	173, 332, 661
AfiI	CCNNNNNNNGG	3 cut(s)	119, 203, 327
AgsI	TTSAA	1 cut(s)	585
AjnI	CCWGG	2 cut(s)	118, 550
AluBI	AGCT	3 cut(s)	71, 161, 237
AluI	AGCT	3 cut(s)	71, 161, 237
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	4 cut(s)	262, 393, 489, 548
AspS9I	GGNCC	2 cut(s)	263, 554
AsuHPI	GGTGA	3 cut(s)	65, 183, 263
AvaII	GGWCC	1 cut(s)	554
AxyI	CCTNAGG	1 cut(s)	505
BaeI	ACNNNNGTAYC	2 cut(s)	322, 355
BalI	TGGCCA	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	348
BccI	CCATC	2 cut(s)	274, 321
BceAI	ACGGC	2 cut(s)	295, 476
BciT130I	CCWGG	2 cut(s)	120, 552
BfaI	CTAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	488
Bme1390I	CCNGG	2 cut(s)	120, 552
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	263, 554
BmiI	GGNNCC	1 cut(s)	350
BmrFI	CCNGG	2 cut(s)	120, 552
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	3 cut(s)	424, 469, 549
BmuI	ACTGGG	1 cut(s)	535
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	213, 396, 486
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 203, 327
Bse1I	ACTGG	2 cut(s)	305, 530
Bse21I	CCTNAGG	1 cut(s)	505
BseBI	CCWGG	2 cut(s)	120, 552
BseDI	CCNNGG	3 cut(s)	213, 396, 486
BseGI	GGATG	6 cut(s)	145, 266, 332, 412, 434, 649
BseLI	CCNNNNNNNGG	3 cut(s)	119, 203, 327
BseMII	CTCAG	2 cut(s)	414, 507
BseNI	ACTGG	2 cut(s)	305, 530
BseRI	GAGGAG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	264, 395, 491, 550
BshNI	GGYRCC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	3 cut(s)	119, 203, 327
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	4 cut(s)	264, 395, 491, 550
Bsp1407I	TGTACA	1 cut(s)	659
Bsp143I	GATC	1 cut(s)	341
Bsp19I	CCATGG	1 cut(s)	396
BspANI	GGCC	4 cut(s)	264, 395, 491, 550
BspCNI	CTCAG	2 cut(s)	415, 508
BspLI	GGNNCC	1 cut(s)	350
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	348
BsrGI	TGTACA	1 cut(s)	659
BsrI	ACTGG	2 cut(s)	305, 530
BssECI	CCNNGG	3 cut(s)	213, 396, 486
BssMI	GATC	1 cut(s)	341
BssT1I	CCWWGG	3 cut(s)	213, 396, 486
Bst2UI	CCWGG	2 cut(s)	120, 552
Bst4CI	ACNGT	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	659
BstDEI	CTNAG	4 cut(s)	423, 505, 516, 563
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	6 cut(s)	145, 266, 332, 412, 434, 649
BstKTI	GATC	1 cut(s)	344
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	2 cut(s)	120, 552
BstSCI	CCNGG	2 cut(s)	118, 550
BstXI	CCANNNNNNTGG	1 cut(s)	403
Bsu36I	CCTNAGG	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	264, 395, 491, 550
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	6 cut(s)	145, 266, 332, 412, 434, 649
BveI	ACCTGC	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	263, 554
Csp6I	GTAC	3 cut(s)	172, 331, 660
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	3 cut(s)	397, 443, 546
CviQI	GTAC	3 cut(s)	172, 331, 660
DdeI	CTNAG	4 cut(s)	423, 505, 516, 563
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	393
Eco130I	CCWWGG	3 cut(s)	213, 396, 486
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	554
Eco81I	CCTNAGG	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	118, 550
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	3 cut(s)	213, 396, 486
ErhI	CCWWGG	3 cut(s)	213, 396, 486
FaeI	CATG	3 cut(s)	400, 446, 549
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	3 cut(s)	396, 442, 545
FokI	GGATG	6 cut(s)	152, 253, 339, 419, 441, 656
FspBI	CTAG	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	4 cut(s)	264, 395, 491, 550
HapII	CCGG	1 cut(s)	204
Hin1II	CATG	3 cut(s)	400, 446, 549
HinfI	GANTC	3 cut(s)	96, 143, 416
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	3 cut(s)	65, 183, 263
Hpy188I	TCNGA	5 cut(s)	101, 148, 271, 517, 558
Hpy188III	TCNNGA	1 cut(s)	496
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	2 cut(s)	314, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	4 cut(s)	423, 505, 516, 563
Hsp92II	CATG	3 cut(s)	400, 446, 549
Kzo9I	GATC	1 cut(s)	341
LweI	GCATC	3 cut(s)	424, 469, 549
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	5 cut(s)	128, 206, 251, 275, 566
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	3 cut(s)	4, 105, 573
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	137, 410
Mox20I	TGGCCA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	2 cut(s)	271, 401
Msp20I	TGGCCA	1 cut(s)	395
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	120, 552
MvaI	CCWGG	2 cut(s)	120, 552
MwoI	GCNNNNNNNGC	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	3 cut(s)	400, 446, 549
NlaIV	GGNNCC	1 cut(s)	350
NmuCI	GTSAC	2 cut(s)	251, 275
PaqCI	CACCTGC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	327
PfoI	TCCNGGA	1 cut(s)	118
PleI	GAGTC	2 cut(s)	137, 410
PpsI	GAGTC	2 cut(s)	137, 410
Psp6I	CCWGG	2 cut(s)	118, 550
PspGI	CCWGG	2 cut(s)	118, 550
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	263, 554
RsaI	GTAC	3 cut(s)	173, 332, 661
RsaNI	GTAC	3 cut(s)	172, 331, 660
RseI	CAYNNNNRTG	2 cut(s)	271, 401
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	2 cut(s)	263, 554
SchI	GAGTC	2 cut(s)	137, 410
ScrFI	CCNGG	2 cut(s)	120, 552
SetI	ASST	8 cut(s)	73, 163, 182, 225, 239, 250, 350, 511
SfaNI	GCATC	3 cut(s)	424, 469, 549
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	2 cut(s)	271, 401
Sse9I	AATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	118, 550
StyI	CCWWGG	3 cut(s)	213, 396, 486
TaaI	ACNGT	1 cut(s)	338
TasI	AATT	1 cut(s)	51
TatI	WGTACW	1 cut(s)	659
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	251, 275
Tsp45I	GTSAC	2 cut(s)	251, 275
TspGWI	ACGGA	1 cut(s)	270
Van91I	CCANNNNNTGG	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	554
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.