Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Forward (+)

5978492 .. 5979367

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGGATATACGAGGTGGTGATGGAGGAGATAACGGTGTACACGGGGCTATCACCGGCGGCGTTTTTCACAATCGCTGGGATGATGGTCGTCGTTTACAGATATGTTACCGGAATGTTTGTGGCTCCCGAAGATTACAACAAGCCACCGGTGGTGAGTAGTGCTAATTCGGAATTGGCGAACAAGTATTTCAATCCCACGACCGCCACGACACCAAGCTCAATCCAAGTCGGGGATATGACGGAGCAAGAGCTTAGAGGATATGATGGGTCTGACCCCAATAAGCCCCTTCTCATGGCCATCAAAGCTCAGATCTACGACGTCTCCTCCTCCAGCAGGAACTTCTATGGTCCAGGTGGACCGTATGCAATGTTTGCTGGAAGGGATGCTAGCAGAGCCTTGGCTCTTCTGTCTTTCAAACCCCAAGACATTAACGGAAACATCGATGGCCTCGGTCCCGACGAGCTTCAGATTTTACAGGACTGGGAAGATAAATTCGTTGAAAAATATCTCAAGGTTGGACGGCTGCTGAACCGTGATCCTGTGCCACAACCAACACAAGAGACTAGGCAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

192

Amino Acids

21.22

Weight (kDa)

4.63

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	81 - 175	1.3e-08	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AciI	CCGC	2 cut(s)	59, 204
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	232, 295, 336
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	193, 418, 503
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	4 cut(s)	219, 253, 308, 466
AluI	AGCT	4 cut(s)	219, 253, 308, 466
Alw26I	GTCTC	2 cut(s)	328, 557
AlwI	GGATC	1 cut(s)	533
AoxI	GGCC	2 cut(s)	297, 448
ApeKI	GCWGC	1 cut(s)	526
ApoI	RAATTY	1 cut(s)	494
AsiGI	ACCGGT	1 cut(s)	148
AspS9I	GGNCC	3 cut(s)	350, 359, 455
AsuHPI	GGTGA	3 cut(s)	31, 45, 166
AsuNHI	GCTAGC	1 cut(s)	389
AvaII	GGWCC	3 cut(s)	350, 359, 455
BalI	TGGCCA	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	513
BccI	CCATC	5 cut(s)	16, 79, 260, 308, 440
BceAI	ACGGC	1 cut(s)	539
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	328, 557
BfaI	CTAG	2 cut(s)	390, 567
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	2 cut(s)	60, 527
BlsI	GCNGC	2 cut(s)	61, 528
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	3 cut(s)	350, 359, 455
BmgT120I	GGNCC	3 cut(s)	350, 359, 455
BmiI	GGNNCC	2 cut(s)	126, 457
BmrFI	CCNGG	1 cut(s)	354
BmrI	ACTGGG	1 cut(s)	493
BmsI	GCATC	1 cut(s)	376
BmtI	GCTAGC	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	493
BpmI	CTGGAG	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	497
Bsa29I	ATCGAT	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	399, 451
BsaWI	WCCGGW	2 cut(s)	110, 148
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 311, 338, 341
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 295, 336
Bse118I	RCCGGY	2 cut(s)	55, 148
Bse1I	ACTGG	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	399, 451
BseGI	GGATG	2 cut(s)	87, 391
BseLI	CCNNNNNNNGG	3 cut(s)	232, 295, 336
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	3 cut(s)	41, 316, 319
BseXI	GCAGC	1 cut(s)	513
BseYI	CCCAGC	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	299, 450
BshTI	ACCGGT	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	444
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	3 cut(s)	56, 111, 149
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	3 cut(s)	232, 295, 336
BsmAI	GTCTC	2 cut(s)	328, 557
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	299, 450
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	312, 538
BspACI	CCGC	2 cut(s)	59, 204
BspANI	GGCC	2 cut(s)	299, 450
BspCNI	CTCAG	1 cut(s)	322
BspDI	ATCGAT	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	126, 457
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	533
BspQI	GCTCTTC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	2 cut(s)	55, 148
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	488
BssAI	RCCGGY	2 cut(s)	55, 148
BssECI	CCNNGG	2 cut(s)	399, 451
BssMI	GATC	2 cut(s)	312, 538
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	37, 363, 536
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	2 cut(s)	254, 309
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	87, 391
BstKTI	GATC	2 cut(s)	315, 541
BstMAI	GTCTC	2 cut(s)	328, 557
BstMBI	GATC	2 cut(s)	312, 538
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 374, 395
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
Bsu15I	ATCGAT	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	299, 450
BsuTUI	ATCGAT	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	87, 391
Cac8I	GCNNGC	1 cut(s)	391
Cfr10I	RCCGGY	2 cut(s)	55, 148
Cfr13I	GGNCC	3 cut(s)	350, 359, 455
ClaI	ATCGAT	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	40
CspAI	ACCGGT	1 cut(s)	148
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	254, 309
DpnI	GATC	2 cut(s)	314, 540
DpnII	GATC	2 cut(s)	312, 538
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	399
Eco47I	GGWCC	3 cut(s)	350, 359, 455
Eco57I	CTGAAG	1 cut(s)	452
EcoNI	CCTNNNNNAGG	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	1 cut(s)	298
FaiI	YATR	7 cut(s)	10, 105, 239, 264, 296, 348, 366
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	60, 527
FokI	GGATG	2 cut(s)	94, 398
Fsp4HI	GCNGC	2 cut(s)	60, 527
FspBI	CTAG	2 cut(s)	390, 567
GluI	GCNGC	2 cut(s)	60, 527
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	299, 450
HapII	CCGG	3 cut(s)	56, 111, 149
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	298
HpaII	CCGG	3 cut(s)	56, 111, 149
HphI	GGTGA	3 cut(s)	31, 45, 166
Hpy166II	GTNNAC	4 cut(s)	40, 42, 97, 359
Hpy188I	TCNGA	4 cut(s)	172, 274, 312, 471
Hpy188III	TCNNGA	2 cut(s)	128, 458
Hpy8I	GTNNAC	4 cut(s)	40, 42, 97, 359
Hpy99I	CGWCG	3 cut(s)	95, 323, 464
HpyAV	CCTTC	2 cut(s)	299, 375
HpyCH4III	ACNGT	3 cut(s)	37, 363, 536
HpyCH4IV	ACGT	2 cut(s)	321, 575
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 374, 395
HpyF3I	CTNAG	2 cut(s)	254, 309
HpySE526I	ACGT	2 cut(s)	321, 575
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	312, 538
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	130, 244
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	390, 567
MaeII	ACGT	2 cut(s)	321, 575
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	314, 540
MboI	GATC	2 cut(s)	312, 538
MboII	GAAGA	3 cut(s)	143, 398, 500
MflI	RGATCY	1 cut(s)	312
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	3 cut(s)	166, 173, 494
MluNI	TGGCCA	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	6 cut(s)	7, 19, 251, 337, 340, 461
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	3 cut(s)	56, 111, 149
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	305, 374, 395
NdeII	GATC	2 cut(s)	312, 538
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	126, 457
PciSI	GCTCTTC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	4 cut(s)	176, 206, 441, 459
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	61, 528
Psp6I	CCWGG	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	126, 457
PspPI	GGNCC	3 cut(s)	350, 359, 455
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	2 cut(s)	60, 527
Sau3AI	GATC	2 cut(s)	312, 538
Sau96I	GGNCC	3 cut(s)	350, 359, 455
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	9 cut(s)	18, 221, 255, 310, 324, 358, 468, 519, 578
SfaNI	GCATC	1 cut(s)	376
SgrAI	CRCCGGYG	2 cut(s)	55, 148
SinI	GGWCC	3 cut(s)	350, 359, 455
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	3 cut(s)	166, 173, 494
SsiI	CCGC	2 cut(s)	59, 204
SspMI	CTAG	2 cut(s)	390, 567
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	3 cut(s)	37, 363, 536
TaiI	ACGT	2 cut(s)	324, 578
TaqI	TCGA	1 cut(s)	444
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	3 cut(s)	166, 173, 494
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseI	GCWGC	1 cut(s)	526
TspGWI	ACGGA	2 cut(s)	257, 450
VpaK11BI	GGWCC	3 cut(s)	350, 359, 455
XagI	CCTNNNNNAGG	1 cut(s)	334
XapI	RAATTY	1 cut(s)	494
XspI	CTAG	2 cut(s)	390, 567
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.