Rorug02G0355300

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000342
Physical Location & Seq
Reverse (-)
44710186 .. 44713084
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0355300.1

Sequence Viewer

Length: 651 bp
ATGGGAATCATAAGAAGGTTGATGGGGCCTTGGAGGGTTTTGCTCCTGTCTCTTCCACTAGAATTGATTGGAAACCCAGAAAGAGATCAGAGAGGTAACTTGTTTCTAACAGCTGGCGGGAGGAGTATAGAGAAGGTAACAGAGGACACTGCTAACAATACTCCCAACAAACAGGAAGAGTATACCGAGCCCGATGAGGATATGCTTCAGGACTCAACTGCAGCTCCTGAACTGTCGGAACGTCGAAAGGCTCTGTTTGAACCCTTAGAACCTATGATGAATGGCAATGGGAAACGACCATCAGCTGAGTCCTTACTTCCTCCTCCTGACTTTGATTCCACGAGCTATCCTAAAGGGTGGCTTATTGGAAAAAGGCGAAAGCTGGTTAATGTTGATGTCGTTGAGAAAATGAGGCGGATTGCCATTCAGGAAATGAACAGAAAGGATAGGGAAATTGATGGACTAAACGAGCAATTGGAGGAGGATGCAAGGTGCCTAGAACACTTGCAACTGCAGCTCCTGCAAGAGCGAAGCAAACGTGGAGAAGTCGAGAGAGAGAATGCAATGCTGCAAGACCAGATTACTATGCTTATGGACATGCTGCACGAAGACGGCAATGTAGGAGATGATGAAGGCCCTGCTGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

216

Amino Acids

24.69

Weight (kDa)

4.73

Isoelectric Point (pI)

64.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 492
AccI GTMKAC 1 cut(s) 182
AciI CCGC 2 cut(s) 117, 415
AcuI CTGAAG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 260
AluBI AGCT 6 cut(s) 113, 224, 305, 345, 382, 517
AluI AGCT 6 cut(s) 113, 224, 305, 345, 382, 517
Alw26I GTCTC 1 cut(s) 54
AlwNI CAGNNNCTG 2 cut(s) 227, 520
AoxI GGCC 2 cut(s) 26, 634
ApeKI GCWGC 4 cut(s) 221, 514, 568, 601
AspS9I GGNCC 2 cut(s) 26, 635
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 615
BbvI GCAGC 4 cut(s) 233, 526, 555, 588
BccI CCATC 3 cut(s) 16, 307, 452
BceAI ACGGC 1 cut(s) 628
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 2 cut(s) 59, 497
BfmI CTRYAG 2 cut(s) 219, 512
BisI GCNGC 4 cut(s) 222, 515, 569, 602
BlsI GCNGC 4 cut(s) 223, 516, 570, 603
BmgT120I GGNCC 2 cut(s) 26, 635
BmiI GGNNCC 2 cut(s) 27, 494
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 4 cut(s) 208, 238, 501, 531
Bse3DI GCAATG 3 cut(s) 292, 570, 622
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 490
BseMI GCAATG 3 cut(s) 292, 570, 622
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 3 cut(s) 136, 312, 494
BseXI GCAGC 4 cut(s) 233, 526, 555, 588
BsgI GTGCAG 1 cut(s) 587
BshFI GGCC 2 cut(s) 28, 636
BshNI GGYRCC 1 cut(s) 492
BsmAI GTCTC 1 cut(s) 54
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 2 cut(s) 28, 636
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 2 cut(s) 117, 415
BspANI GGCC 2 cut(s) 28, 636
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 27, 494
BspMAI CTGCAG 2 cut(s) 223, 516
BspT107I GGYRCC 1 cut(s) 492
BsrDI GCAATG 3 cut(s) 292, 570, 622
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 85
BssNAI GTATAC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 29
Bst1107I GTATAC 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 2 cut(s) 57, 171
BstAPI GCANNNNNTGC 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 265, 306
BstF5I GGATG 1 cut(s) 490
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 514, 520
BstNSI RCATGY 1 cut(s) 601
BstSFI CTRYAG 2 cut(s) 219, 512
BstV1I GCAGC 4 cut(s) 233, 526, 555, 588
BstV2I GAAGAC 1 cut(s) 615
BstZ17I GTATAC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 28, 636
BtsCI GGATG 1 cut(s) 490
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 115
CaiI CAGNNNCTG 2 cut(s) 227, 520
Cfr13I GGNCC 2 cut(s) 26, 635
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 2 cut(s) 598, 648
DdeI CTNAG 2 cut(s) 265, 306
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 57, 171
EarI CTCTTC 2 cut(s) 57, 171
EciI GGCGGA 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 191
EcoO109I RGGNCCY 2 cut(s) 26, 635
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 2 cut(s) 601, 651
FaiI YATR 9 cut(s) 11, 128, 183, 203, 275, 587, 593, 599, 649
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 2 cut(s) 597, 647
FauI CCCGC 1 cut(s) 110
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 4 cut(s) 222, 515, 569, 602
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 4 cut(s) 222, 515, 569, 602
FspBI CTAG 2 cut(s) 59, 497
GluI GCNGC 4 cut(s) 222, 515, 569, 602
HaeIII GGCC 2 cut(s) 28, 636
Hin1II CATG 2 cut(s) 601, 651
HinfI GANTC 4 cut(s) 6, 212, 308, 335
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 90, 238
Hpy188III TCNNGA 5 cut(s) 209, 227, 326, 428, 550
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 1 cut(s) 246
HpyAV CCTTC 3 cut(s) 9, 127, 626
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 2 cut(s) 241, 538
HpyCH4V TGCA 8 cut(s) 221, 488, 508, 514, 523, 563, 571, 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 514, 520
HpyF3I CTNAG 2 cut(s) 265, 306
HpySE526I ACGT 2 cut(s) 241, 538
Hsp92II CATG 2 cut(s) 601, 651
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 3 cut(s) 48, 229, 522
Lsp1109I GCAGC 4 cut(s) 233, 526, 555, 588
LweI GCATC 1 cut(s) 475
MaeI CTAG 2 cut(s) 59, 497
MaeII ACGT 2 cut(s) 241, 538
MaeIII GTNAC 2 cut(s) 95, 136
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 44, 188, 620
MfeI CAATTG 1 cut(s) 473
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 3 cut(s) 62, 453, 473
MlyI GAGTC 2 cut(s) 206, 317
MmeI TCCRAC 1 cut(s) 216
MseI TTAA 1 cut(s) 387
MspA1I CMGCKG 2 cut(s) 113, 305
MunI CAATTG 1 cut(s) 473
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 2 cut(s) 514, 520
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 601, 651
NlaIV GGNNCC 2 cut(s) 27, 494
NspI RCATGY 1 cut(s) 601
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 2 cut(s) 6, 335
PkrI GCNGC 4 cut(s) 223, 516, 570, 603
PleI GAGTC 2 cut(s) 206, 316
PpsI GAGTC 2 cut(s) 206, 316
PspN4I GGNNCC 2 cut(s) 27, 494
PspPI GGNCC 2 cut(s) 26, 635
PstI CTGCAG 2 cut(s) 223, 516
PstNI CAGNNNCTG 2 cut(s) 227, 520
PvuII CAGCTG 2 cut(s) 113, 305
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 4 cut(s) 222, 515, 569, 602
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 26, 635
SchI GAGTC 2 cut(s) 206, 317
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 2 cut(s) 219, 512
Sse9I AATT 3 cut(s) 62, 453, 473
SsiI CCGC 2 cut(s) 117, 415
SspMI CTAG 2 cut(s) 59, 497
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 2 cut(s) 244, 541
TaqI TCGA 2 cut(s) 244, 549
TasI AATT 3 cut(s) 62, 453, 473
TfiI GAWTC 2 cut(s) 6, 335
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 154
TseI GCWGC 4 cut(s) 221, 514, 568, 601
TspDTI ATGAA 3 cut(s) 293, 449, 645
TspRI CASTG 1 cut(s) 154
XceI RCATGY 1 cut(s) 601
XmiI GTMKAC 1 cut(s) 182
XspI CTAG 2 cut(s) 59, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.