Rh6DG121600

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000342
Physical Location & Seq
Forward (+)
16887371 .. 16888823
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG121600.1

Sequence Viewer

Length: 831 bp
ATGGAGGTAGAGCAAGTTCTTCACATGAATGGCGGAGATGGCAAATTAAGCTACGCAAACCACTCACTTCTTCAAAGAGCTGTGATTTCGACGGTGAAGCCTATAGTGGATGCAAGCATAGAGGAGCTCTGCAGCACTCTCTTCCCGGAGTGCCTGAAAATAGCGGACTTGGGATGCTCTTCGGGACCCAATACCCTACTGGTAGTATCAGACATCATAGCCAACATCCAGAACACGTTTCGGAAGCTCAACCTTCCCCCGCCATCCCTCCAAGCATTCTTGAATGACCTTCCCCGGAACGATTTCAACACGGTGTTTAGGTCACTGCCTGGCTTCTATAACAAGCTCGATGAAGAACATGAGAACAAGTCGGGTCCTTGTTTCATTGCAGCAATGCCTGGTTCCTTTTATGGGAGGCTCTTCCCTGACAACTCTCTCCACTTTGTTCATTCTTCTTGTGCTCTCATGTGGATCTCTGAGGTCCCAAAAGGTTTGGTGACGAAAGGAGGAGAGGGACTGAACAAGGGAAACATATATATAGCCAAGACAAGCTCACCCGCTGTGTTTAATGAATACTTTGAGCAATTCAAAAGGGACTTCAGAGTCTTTCTGAGGTCTCGGGCACAAGAGCTAGTCCCGGGAGGTAGTATGGTCCTCACAACAATGGGCAGCATAAATAGCAAAGATCCCCTCTGCATTTGGGAATTTGTCGGATTAAAACTACATGACATGGTTTTAGATGTATGCATGTGCCAGGCATTAGACTTCTTCATTTTGGGAACGATAATCTTTCTCTTACTAACATACTATGATGAATTTTTCAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

276

Amino Acids

30.85

Weight (kDa)

5.53

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 40 - 247 6.8e-84 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AciI CCGC 4 cut(s) 33, 164, 260, 558
AclWI GGATC 2 cut(s) 479, 680
AcsI RAATTY 2 cut(s) 704, 815
AcuI CTGAAG 1 cut(s) 583
AfiI CCNNNNNNNGG 1 cut(s) 411
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 4 cut(s) 74, 283, 307, 589
AjnI CCWGG 3 cut(s) 328, 397, 753
AluBI AGCT 7 cut(s) 51, 80, 127, 247, 346, 552, 631
AluI AGCT 7 cut(s) 51, 80, 127, 247, 346, 552, 631
Alw21I GWGCWC 2 cut(s) 129, 463
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 2 cut(s) 479, 680
Ama87I CYCGRG 2 cut(s) 618, 637
ApeKI GCWGC 3 cut(s) 132, 389, 669
ApoI RAATTY 2 cut(s) 704, 815
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 4 cut(s) 185, 374, 481, 652
AsuC2I CCSGG 4 cut(s) 146, 295, 638, 639
AsuHPI GGTGA 3 cut(s) 106, 508, 546
AvaI CYCGRG 2 cut(s) 618, 637
AvaII GGWCC 4 cut(s) 185, 374, 481, 652
BaeGI GKGCMC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 129, 463
BbvI GCAGC 3 cut(s) 144, 401, 681
BccI CCATC 2 cut(s) 32, 271
BciT130I CCWGG 3 cut(s) 330, 399, 755
BcnI CCSGG 4 cut(s) 146, 295, 638, 639
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 2 cut(s) 102, 130
BisI GCNGC 3 cut(s) 133, 390, 670
BlsI GCNGC 3 cut(s) 134, 391, 671
Bme1390I CCNGG 7 cut(s) 146, 295, 330, 399, 638, 639, 755
Bme18I GGWCC 4 cut(s) 185, 374, 481, 652
BmeT110I CYCGRG 2 cut(s) 618, 637
BmgT120I GGNCC 4 cut(s) 185, 374, 481, 652
BmiI GGNNCC 5 cut(s) 186, 187, 375, 403, 483
BmrFI CCNGG 7 cut(s) 146, 295, 330, 399, 638, 639, 755
BmsI GCATC 2 cut(s) 100, 164
BpuMI CCSGG 4 cut(s) 146, 295, 638, 639
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 2 cut(s) 293, 637
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 2 cut(s) 384, 399
BseBI CCWGG 3 cut(s) 330, 399, 755
BseDI CCNNGG 2 cut(s) 293, 637
BseGI GGATG 4 cut(s) 115, 179, 225, 263
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMI GCAATG 2 cut(s) 384, 399
BseMII CTCAG 2 cut(s) 468, 602
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 2 cut(s) 137, 522
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 3 cut(s) 144, 401, 681
BsiHKAI GWGCWC 2 cut(s) 129, 463
BsiHKCI CYCGRG 2 cut(s) 618, 637
BsiSI CCGG 3 cut(s) 146, 295, 638
BslFI GGGAC 5 cut(s) 198, 467, 528, 608, 620
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 5 cut(s) 198, 467, 528, 608, 620
BsmI GAATGC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 621
BsoBI CYCGRG 2 cut(s) 618, 637
Bsp1286I GDGCHC 3 cut(s) 129, 463, 625
Bsp143I GATC 2 cut(s) 471, 685
BspACI CCGC 4 cut(s) 33, 164, 260, 558
BspCNI CTCAG 2 cut(s) 469, 603
BspLI GGNNCC 5 cut(s) 186, 187, 375, 403, 483
BspMAI CTGCAG 1 cut(s) 134
BspPI GGATC 2 cut(s) 479, 680
BspQI GCTCTTC 2 cut(s) 184, 425
BspTNI GGTCTC 1 cut(s) 621
BsrDI GCAATG 2 cut(s) 384, 399
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 293, 637
BssMI GATC 2 cut(s) 471, 685
Bst2UI CCWGG 3 cut(s) 330, 399, 755
Bst4CI ACNGT 2 cut(s) 94, 313
Bst6I CTCTTC 3 cut(s) 146, 184, 425
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 477, 611
BstF5I GGATG 4 cut(s) 115, 179, 225, 263
BstKTI GATC 2 cut(s) 474, 688
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 2 cut(s) 471, 685
BstMWI GCNNNNNNNGC 3 cut(s) 39, 48, 678
BstNI CCWGG 3 cut(s) 330, 399, 755
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 7 cut(s) 144, 293, 328, 397, 636, 637, 753
BstSFI CTRYAG 2 cut(s) 102, 130
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 3 cut(s) 144, 401, 681
BstX2I RGATCY 2 cut(s) 471, 685
BstYI RGATCY 2 cut(s) 471, 685
BtsCI GGATG 4 cut(s) 115, 179, 225, 263
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 115
Cfr13I GGNCC 4 cut(s) 185, 374, 481, 652
Cfr9I CCCGGG 1 cut(s) 637
CviAII CATG 6 cut(s) 25, 359, 466, 725, 730, 748
DdeI CTNAG 2 cut(s) 477, 611
DpnI GATC 2 cut(s) 473, 687
DpnII GATC 2 cut(s) 471, 685
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 3 cut(s) 146, 184, 425
EarI CTCTTC 3 cut(s) 146, 184, 425
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 621
Eco47I GGWCC 4 cut(s) 185, 374, 481, 652
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 583
Eco88I CYCGRG 2 cut(s) 618, 637
EcoICRI GAGCTC 1 cut(s) 127
EcoO109I RGGNCCY 3 cut(s) 185, 374, 481
EcoRII CCWGG 3 cut(s) 328, 397, 753
EcoT22I ATGCAT 1 cut(s) 749
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 6 cut(s) 28, 362, 469, 728, 733, 751
FaqI GGGAC 5 cut(s) 198, 467, 528, 608, 620
FatI CATG 6 cut(s) 24, 358, 465, 724, 729, 747
FauI CCCGC 2 cut(s) 267, 565
Fnu4HI GCNGC 3 cut(s) 133, 390, 670
FokI GGATG 4 cut(s) 122, 186, 212, 250
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 133, 390, 670
FspBI CTAG 1 cut(s) 632
GluI GCNGC 3 cut(s) 133, 390, 670
HapII CCGG 3 cut(s) 146, 295, 638
Hin1II CATG 6 cut(s) 28, 362, 469, 728, 733, 751
HinfI GANTC 1 cut(s) 603
HpaII CCGG 3 cut(s) 146, 295, 638
HphI GGTGA 3 cut(s) 106, 508, 546
Hpy188I TCNGA 6 cut(s) 211, 243, 478, 602, 612, 713
Hpy188III TCNNGA 3 cut(s) 183, 229, 280
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 263, 299
HpyCH4III ACNGT 2 cut(s) 94, 313
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 5 cut(s) 113, 132, 389, 696, 747
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 48, 678
HpyF3I CTNAG 2 cut(s) 477, 611
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 6 cut(s) 28, 362, 469, 728, 733, 751
KflI GGGWCCC 1 cut(s) 185
Kzo9I GATC 2 cut(s) 471, 685
LguI GCTCTTC 2 cut(s) 184, 425
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 3 cut(s) 144, 401, 681
LweI GCATC 2 cut(s) 100, 164
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 321, 496
MalI GATC 2 cut(s) 473, 687
MboI GATC 2 cut(s) 471, 685
MboII GAAGA 8 cut(s) 11, 62, 133, 171, 365, 412, 444, 760
MflI RGATCY 2 cut(s) 471, 685
MhlI GDGCHC 3 cut(s) 129, 463, 625
MluCI AATT 4 cut(s) 44, 584, 704, 815
MlyI GAGTC 1 cut(s) 612
MmeI TCCRAC 1 cut(s) 691
Mph1103I ATGCAT 1 cut(s) 749
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 3 cut(s) 47, 567, 716
MslI CAYNNNNRTG 2 cut(s) 27, 662
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 3 cut(s) 146, 295, 638
MspR9I CCNGG 7 cut(s) 146, 295, 330, 399, 638, 639, 755
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 3 cut(s) 330, 399, 755
MwoI GCNNNNNNNGC 3 cut(s) 39, 48, 678
NciI CCSGG 4 cut(s) 146, 295, 638, 639
NdeII GATC 2 cut(s) 471, 685
NlaIII CATG 6 cut(s) 28, 362, 469, 728, 733, 751
NlaIV GGNNCC 5 cut(s) 186, 187, 375, 403, 483
NmuCI GTSAC 2 cut(s) 321, 496
NsiI ATGCAT 1 cut(s) 749
NspI RCATGY 1 cut(s) 751
PciSI GCTCTTC 2 cut(s) 184, 425
PctI GAATGC 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 302
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 3 cut(s) 134, 391, 671
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
PpuMI RGGWCCY 3 cut(s) 185, 374, 481
Psp124BI GAGCTC 1 cut(s) 129
Psp5II RGGWCCY 3 cut(s) 185, 374, 481
Psp6I CCWGG 3 cut(s) 328, 397, 753
PspGI CCWGG 3 cut(s) 328, 397, 753
PspN4I GGNNCC 5 cut(s) 186, 187, 375, 403, 483
PspPI GGNCC 4 cut(s) 185, 374, 481, 652
PspPPI RGGWCCY 3 cut(s) 185, 374, 481
PsrI GAACNNNNNNTAC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 471, 685
RseI CAYNNNNRTG 2 cut(s) 27, 662
SacI GAGCTC 1 cut(s) 129
SapI GCTCTTC 2 cut(s) 184, 425
SaqAI TTAA 3 cut(s) 47, 567, 716
SatI GCNGC 3 cut(s) 133, 390, 670
Sau3AI GATC 2 cut(s) 471, 685
Sau96I GGNCC 4 cut(s) 185, 374, 481, 652
SchI GAGTC 1 cut(s) 612
ScrFI CCNGG 7 cut(s) 146, 295, 330, 399, 638, 639, 755
SduI GDGCHC 3 cut(s) 129, 463, 625
SfaNI GCATC 2 cut(s) 100, 164
SfcI CTRYAG 2 cut(s) 102, 130
SinI GGWCC 4 cut(s) 185, 374, 481, 652
SmaI CCCGGG 1 cut(s) 639
SmiMI CAYNNNNRTG 2 cut(s) 27, 662
Sse9I AATT 4 cut(s) 44, 584, 704, 815
SsiI CCGC 4 cut(s) 33, 164, 260, 558
SspMI CTAG 1 cut(s) 632
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 7 cut(s) 144, 293, 328, 397, 636, 637, 753
TaaI ACNGT 2 cut(s) 94, 313
TaiI ACGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 89, 348
TasI AATT 4 cut(s) 44, 584, 704, 815
Tru1I TTAA 3 cut(s) 47, 567, 716
Tru9I TTAA 3 cut(s) 47, 567, 716
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 2 cut(s) 321, 496
TseI GCWGC 3 cut(s) 132, 389, 669
Tsp45I GTSAC 2 cut(s) 321, 496
TspDTI ATGAA 7 cut(s) 41, 366, 373, 437, 585, 760, 828
TspMI CCCGGG 1 cut(s) 637
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 4 cut(s) 185, 374, 481, 652
XapI RAATTY 2 cut(s) 704, 815
XceI RCATGY 1 cut(s) 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmaI CCCGGG 1 cut(s) 637
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 1 cut(s) 632
Zsp2I ATGCAT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.