Prupe.8G092700_v2.0.a1

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000342
Physical Location & Seq
Reverse (-)
12538685 .. 12540212
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G092700.1

Sequence Viewer

Length: 1011 bp
ATGGTGAAGCCCATAGTTGGTGCAAGCATAGAGGAGCTGTGTTGCACTCTCTTCCCAGAGTGTTTGAAAGTAGCAGACTTGGGACGCTCTTCAGGACCCAACACCCTTTTGGTGGTATCAGATATCATAAACAGCATCCACACAACTTACCAAAAACTCAACCGCCCACCTCCATCACTCCAAGCCTTCTTGAATGATCTTCCTGGAAACGATTTCAACGCGGGGTTCAGGTCATTGCCAGGCTTCTATAAGAAACTTGATGAAGAACATGAGAAGAAGTTTGGGTCATGTTTTATTGCAGGAATGCCTGGTTCTTTCTATGGCAGGCTCTTCCCCAACAATTCTCTGAACTTTGTTCACTCTTCTTATGCTCTCCACTGGATCTCTGAGGTTCCAAAAGGCTTGTTGACCGAAGAAGAAGAGGGACTTAACAAGGGGAACATATATATAGCAAAGACAAGCCCTCCAGCTGTGTTTAAGCAATACTTGGAGCAATTCAAAAGGGACTTCACAGTCTTTTTGAGGTCACGTGCCGAAGAGCTTGTCCCAGGAGGCAGTATGGTACTCACAATCACTGGCAGCATAAAGAGTCATGATCCCCTCTGCATTTGGGAATTTGTAGGACTGAAACTCAATGACATGGTTTTAGAGGGTTTGATTGGTAAGGAAAAATTGGACGCATTCAATATGCCATTCTATACACCTACAACGAAGGAGATAGAAGAGGTGATCCAGGCTGAAGGATCATTTACTTTGCAAAACCTTGAAGTTCTCAAAAATGATTGGGACTCTTATATAAAGCAAGCTAATAGTGGTCTTGATAAGAAGACAAGGGCTGCAATATTTGCCACTCACATAAGGGCTGTGGCAGAGCCAATTCTGGCGAGCCAATTCGGAGAAGAAGCAATGGACGATTTGTTTCCTAGGTTTGAAGAAGATGTTCTTGATCACATGGAAAGGGAGAACTGCCAGTACATTAACCTGGTTATCTCGTTGACAAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

337

Amino Acids

37.81

Weight (kDa)

5.32

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 512
AccII CGCG 1 cut(s) 221
AciI CCGC 2 cut(s) 163, 221
AclWI GGATC 4 cut(s) 389, 590, 724, 751
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 2 cut(s) 75, 759
AcvI CACGTG 1 cut(s) 530
AfaI GTAC 2 cut(s) 564, 974
AfiI CCNNNNNNNGG 2 cut(s) 17, 112
AgsI TTSAA 7 cut(s) 67, 193, 217, 499, 685, 767, 932
AjnI CCWGG 6 cut(s) 202, 238, 307, 547, 732, 981
AluBI AGCT 4 cut(s) 37, 470, 541, 806
AluI AGCT 4 cut(s) 37, 470, 541, 806
AlwI GGATC 4 cut(s) 389, 590, 724, 751
ApeKI GCWGC 2 cut(s) 579, 836
ApoI RAATTY 1 cut(s) 614
ArsI GACNNNNNNTTYG 2 cut(s) 528, 560
Asp700I GAANNNNTTC 1 cut(s) 939
AspA2I CCTAGG 1 cut(s) 923
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 16, 739
AvaII GGWCC 1 cut(s) 95
AvrII CCTAGG 1 cut(s) 923
BbrPI CACGTG 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 833
BbvI GCAGC 2 cut(s) 591, 823
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 6 cut(s) 204, 240, 309, 549, 734, 983
BclI TGATCA 1 cut(s) 946
BfaI CTAG 1 cut(s) 924
BisI GCNGC 2 cut(s) 580, 837
BlnI CCTAGG 1 cut(s) 923
BlsI GCNGC 2 cut(s) 581, 838
Bme1390I CCNGG 6 cut(s) 204, 240, 309, 549, 734, 983
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 97, 393
BmrFI CCNGG 6 cut(s) 204, 240, 309, 549, 734, 983
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 833
BpmI CTGGAG 1 cut(s) 450
BsaAI YACGTR 1 cut(s) 530
BsaJI CCNNGG 2 cut(s) 547, 923
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 112
Bse1I ACTGG 3 cut(s) 383, 580, 970
Bse3DI GCAATG 2 cut(s) 233, 912
BseBI CCWGG 6 cut(s) 204, 240, 309, 549, 734, 983
BseDI CCNNGG 2 cut(s) 547, 923
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 17, 112
BseMI GCAATG 2 cut(s) 233, 912
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 3 cut(s) 383, 580, 970
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 591, 823
Bsh1236I CGCG 1 cut(s) 221
BslFI GGGAC 5 cut(s) 96, 438, 518, 530, 800
BslI CCNNNNNNNGG 2 cut(s) 17, 112
BsmFI GGGAC 5 cut(s) 96, 438, 518, 530, 800
BsmI GAATGC 2 cut(s) 309, 680
Bsp143I GATC 6 cut(s) 196, 381, 595, 729, 743, 946
BspACI CCGC 2 cut(s) 163, 221
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 221
BspHI TCATGA 1 cut(s) 592
BspLI GGNNCC 2 cut(s) 97, 393
BspPI GGATC 4 cut(s) 389, 590, 724, 751
BspQI GCTCTTC 3 cut(s) 94, 335, 531
BsrDI GCAATG 2 cut(s) 233, 912
BsrI ACTGG 3 cut(s) 383, 580, 970
BssECI CCNNGG 2 cut(s) 547, 923
BssMI GATC 6 cut(s) 196, 381, 595, 729, 743, 946
BssT1I CCWWGG 1 cut(s) 923
Bst2UI CCWGG 6 cut(s) 204, 240, 309, 549, 734, 983
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 7 cut(s) 56, 94, 335, 367, 414, 531, 717
BstAPI GCANNNNNTGC 1 cut(s) 845
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 4 cut(s) 25, 326, 804, 886
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 6 cut(s) 199, 384, 598, 732, 746, 949
BstMBI GATC 6 cut(s) 196, 381, 595, 729, 743, 946
BstMWI GCNNNNNNNGC 1 cut(s) 845
BstNI CCWGG 6 cut(s) 204, 240, 309, 549, 734, 983
BstSCI CCNGG 6 cut(s) 202, 238, 307, 547, 732, 981
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 591, 823
BstV2I GAAGAC 1 cut(s) 833
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 376, 573
Cac8I GCNNGC 4 cut(s) 25, 326, 804, 886
CciI TCATGA 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 2 cut(s) 93, 686
CsiI ACCWGGT 1 cut(s) 981
Csp6I GTAC 2 cut(s) 563, 973
CviAII CATG 5 cut(s) 269, 288, 593, 640, 952
CviQI GTAC 2 cut(s) 563, 973
DdeI CTNAG 1 cut(s) 387
DpnI GATC 6 cut(s) 198, 383, 597, 731, 745, 948
DpnII GATC 6 cut(s) 196, 381, 595, 729, 743, 946
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
Eam1104I CTCTTC 7 cut(s) 56, 94, 335, 367, 414, 531, 717
EarI CTCTTC 7 cut(s) 56, 94, 335, 367, 414, 531, 717
Eco130I CCWWGG 1 cut(s) 923
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 95
Eco57I CTGAAG 2 cut(s) 75, 759
Eco72I CACGTG 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 6 cut(s) 202, 238, 307, 547, 732, 981
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 923
ErhI CCWWGG 1 cut(s) 923
FaeI CATG 5 cut(s) 272, 291, 596, 643, 955
FalI AAGNNNNNCTT 6 cut(s) 411, 443, 470, 502, 927, 959
FaqI GGGAC 5 cut(s) 96, 438, 518, 530, 800
FatI CATG 5 cut(s) 268, 287, 592, 639, 951
FauI CCCGC 1 cut(s) 214
FbaI TGATCA 1 cut(s) 946
Fnu4HI GCNGC 2 cut(s) 580, 837
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 580, 837
FspBI CTAG 1 cut(s) 924
GluI GCNGC 2 cut(s) 580, 837
GsuI CTGGAG 1 cut(s) 450
HgaI GACGC 2 cut(s) 93, 686
Hin1II CATG 5 cut(s) 272, 291, 596, 643, 955
HincII GTYRAC 2 cut(s) 408, 996
HindII GTYRAC 2 cut(s) 408, 996
HinfI GANTC 2 cut(s) 589, 788
HphI GGTGA 2 cut(s) 16, 739
Hpy166II GTNNAC 3 cut(s) 358, 408, 996
Hpy188I TCNGA 4 cut(s) 121, 348, 388, 896
Hpy188III TCNNGA 5 cut(s) 93, 190, 593, 818, 944
Hpy8I GTNNAC 3 cut(s) 358, 408, 996
HpyAV CCTTC 3 cut(s) 196, 706, 734
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 6 cut(s) 23, 45, 299, 606, 757, 839
HpyF10VI GCNNNNNNNGC 1 cut(s) 845
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 529
Hsp92II CATG 5 cut(s) 272, 291, 596, 643, 955
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 6 cut(s) 196, 381, 595, 729, 743, 946
LguI GCTCTTC 3 cut(s) 94, 335, 531
LmnI GCTCC 2 cut(s) 34, 490
Lsp1109I GCAGC 2 cut(s) 591, 823
LweI GCATC 1 cut(s) 144
MabI ACCWGGT 1 cut(s) 981
MaeI CTAG 1 cut(s) 924
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 1 cut(s) 525
MalI GATC 6 cut(s) 198, 383, 597, 731, 745, 948
MboI GATC 6 cut(s) 196, 381, 595, 729, 743, 946
MflI RGATCY 1 cut(s) 381
MluCI AATT 6 cut(s) 340, 494, 614, 671, 876, 890
MlyI GAGTC 2 cut(s) 598, 782
MroXI GAANNNNTTC 1 cut(s) 939
MseI TTAA 3 cut(s) 429, 477, 978
MspA1I CMGCKG 1 cut(s) 470
MspR9I CCNGG 6 cut(s) 204, 240, 309, 549, 734, 983
Mva1269I GAATGC 2 cut(s) 309, 680
MvaI CCWGG 6 cut(s) 204, 240, 309, 549, 734, 983
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 845
NdeII GATC 6 cut(s) 196, 381, 595, 729, 743, 946
NlaIII CATG 5 cut(s) 272, 291, 596, 643, 955
NlaIV GGNNCC 2 cut(s) 97, 393
NmuCI GTSAC 1 cut(s) 525
PagI TCATGA 1 cut(s) 592
PciSI GCTCTTC 3 cut(s) 94, 335, 531
PctI GAATGC 2 cut(s) 309, 680
PdmI GAANNNNTTC 1 cut(s) 939
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 2 cut(s) 581, 838
PleI GAGTC 2 cut(s) 597, 782
PmaCI CACGTG 1 cut(s) 530
PmlI CACGTG 1 cut(s) 530
PpsI GAGTC 2 cut(s) 597, 782
Ppu21I YACGTR 1 cut(s) 530
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 6 cut(s) 202, 238, 307, 547, 732, 981
PspCI CACGTG 1 cut(s) 530
PspGI CCWGG 6 cut(s) 202, 238, 307, 547, 732, 981
PspN4I GGNNCC 2 cut(s) 97, 393
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PsrI GAACNNNNNNTAC 2 cut(s) 956, 988
PsuI RGATCY 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 2 cut(s) 564, 974
RsaNI GTAC 2 cut(s) 563, 973
SapI GCTCTTC 3 cut(s) 94, 335, 531
SaqAI TTAA 3 cut(s) 429, 477, 978
SatI GCNGC 2 cut(s) 580, 837
Sau3AI GATC 6 cut(s) 196, 381, 595, 729, 743, 946
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 2 cut(s) 598, 782
ScrFI CCNGG 6 cut(s) 204, 240, 309, 549, 734, 983
SexAI ACCWGGT 1 cut(s) 981
SfaNI GCATC 1 cut(s) 144
SinI GGWCC 1 cut(s) 95
Sse9I AATT 6 cut(s) 340, 494, 614, 671, 876, 890
SsiI CCGC 2 cut(s) 163, 221
SspI AATATT 1 cut(s) 843
SspMI CTAG 1 cut(s) 924
StyD4I CCNGG 6 cut(s) 202, 238, 307, 547, 732, 981
StyI CCWWGG 1 cut(s) 923
TaaI ACNGT 1 cut(s) 514
TaiI ACGT 1 cut(s) 532
TaqII GACCGA 1 cut(s) 425
TasI AATT 6 cut(s) 340, 494, 614, 671, 876, 890
TatI WGTACW 1 cut(s) 972
Tru1I TTAA 3 cut(s) 429, 477, 978
Tru9I TTAA 3 cut(s) 429, 477, 978
TscAI CASTG 2 cut(s) 383, 580
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 2 cut(s) 579, 836
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 2 cut(s) 383, 580
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmaJI CCTAGG 1 cut(s) 923
XmnI GAANNNNTTC 1 cut(s) 939
XspI CTAG 1 cut(s) 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.