FvH4_2g09290

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000342
Physical Location & Seq
Forward (+)
8191599 .. 8193287
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09290.t2

Sequence Viewer

Length: 1011 bp
ATGGTGAAGCCTATTGTGGATGCAAGTTTAGAGGAGTTCTGCAGCACTTTCTTCCCGGAGTGTCTGAAAGTAGCAGACTTAGGATGCTCTTCGGGACCAAATACCCTTCTGGTGGTATCAGACATAATTGAAAATATCCGAAACACGTTTCGAAAGCTCAACCTTCCCCCGCCATCGCTCCAAGCACTCTTGAACGACCTTCCCCGGAACGATTTCAATACGGTGTTCAGGTTACTTCCTGGCTTCTATAAGAAGCTCCATGAAGAAAATGGGAACAAGTTGGGTTCTTGTTTCATTGCAGCAATGCCTGGTTCCTTTTATGGGAGGCTCTTTCCTGACAACTCTCTTCACTTTGTTCATTCATCTTATGCTCTCATGTGGATCTCTGAGGTTCCAAAAGGTTTGGTAACAGAAGGAGGAGAGGGACTGAACAAGGGGAACATATACATATTTAAGACAAGCTCACCTGCTGTGTTTAATGAATACTTTGAGCAACTCAAAAGGGACTTCACTGTCTTTCTGCGATCTAGGGCACACGAGCTAGTCCCGGGAGGTAGTATGGTTCTCACAACCATGGGCAGCATAAAGAGCAATGATCCCCTCTCCATTTGGGAATTCGTCGGATTGAAACTCCATGACATGGTTTTAGATGGTTTGATCGAGGAGGACAAGTTGGACAGATTCAATTTGCCATACTACGCGCCCACAACAGATGAGGTAAAAGAGGTGATCGAGGCGGAAGGGTCTTTTACTTTGCAAAACCTTGAAGCTTTCAGAAATGACTGGGACTCTTACATAAAACAAGCCAATAGTGACCTTGACAAGAAAGCAAGGGCTGCAATACTCTCCACTGACATAAGGGCTGTGGGAGATCCTATTCTGGCCAGCCAATTCGGAGAGGAAGCCATGGACGATTTGTTTCGCAGGTTTGAAGAAGTTGTTCTTGATCACATGGAAAAGGAAAAATGCCAGTTCATTAACCTGGTTATCTCGTTAACTAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

337

Amino Acids

37.97

Weight (kDa)

5.09

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 12 - 334 4.7e-118 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 475
AasI GACNNNNNNGTC 1 cut(s) 512
Acc36I ACCTGC 2 cut(s) 475, 915
AccB7I CCANNNNNTGG 1 cut(s) 640
AccII CGCG 1 cut(s) 701
AciI CCGC 2 cut(s) 170, 737
AclWI GGATC 3 cut(s) 389, 590, 866
AcoI YGGCCR 1 cut(s) 882
AcsI RAATTY 1 cut(s) 614
AfiI CCNNNNNNNGG 3 cut(s) 112, 321, 640
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 7 cut(s) 131, 193, 217, 628, 685, 767, 932
AjnI CCWGG 3 cut(s) 238, 307, 981
AluBI AGCT 5 cut(s) 157, 256, 462, 541, 770
AluI AGCT 5 cut(s) 157, 256, 462, 541, 770
AlwI GGATC 3 cut(s) 389, 590, 866
Ama87I CYCGRG 1 cut(s) 547
AoxI GGCC 1 cut(s) 882
ApeKI GCWGC 4 cut(s) 42, 299, 579, 836
ApoI RAATTY 1 cut(s) 614
Asp700I GAANNNNTTC 2 cut(s) 212, 939
AspLEI GCGC 1 cut(s) 703
AspS9I GGNCC 1 cut(s) 95
AsuC2I CCSGG 4 cut(s) 56, 205, 548, 549
AsuHPI GGTGA 3 cut(s) 16, 456, 739
AsuII TTCGAA 1 cut(s) 151
AvaI CYCGRG 1 cut(s) 547
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 535
BalI TGGCCA 1 cut(s) 884
BauI CACGAG 1 cut(s) 536
BbvI GCAGC 4 cut(s) 54, 311, 591, 823
BccI CCATC 2 cut(s) 181, 644
BciT130I CCWGG 3 cut(s) 240, 309, 983
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 4 cut(s) 56, 205, 548, 549
BfaI CTAG 2 cut(s) 528, 542
BfmI CTRYAG 1 cut(s) 40
BfuAI ACCTGC 2 cut(s) 475, 915
BisI GCNGC 4 cut(s) 43, 300, 580, 837
BlsI GCNGC 4 cut(s) 44, 301, 581, 838
Bme1390I CCNGG 7 cut(s) 56, 205, 240, 309, 548, 549, 983
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 3 cut(s) 96, 313, 393
BmrFI CCNGG 7 cut(s) 56, 205, 240, 309, 548, 549, 983
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 2 cut(s) 10, 74
BmuI ACTGGG 1 cut(s) 793
Bpu14I TTCGAA 1 cut(s) 151
BpuMI CCSGG 4 cut(s) 56, 205, 548, 549
BsaJI CCNNGG 4 cut(s) 203, 547, 573, 906
BsaXI ACNNNNNCTCC 2 cut(s) 656, 686
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 321, 640
Bse1I ACTGG 2 cut(s) 788, 970
Bse3DI GCAATG 3 cut(s) 294, 309, 598
BseBI CCWGG 3 cut(s) 240, 309, 983
BseDI CCNNGG 4 cut(s) 203, 547, 573, 906
BseGI GGATG 2 cut(s) 25, 89
BseLI CCNNNNNNNGG 3 cut(s) 112, 321, 640
BseMI GCAATG 3 cut(s) 294, 309, 598
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 788, 970
BseRI GAGGAG 3 cut(s) 47, 432, 677
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 4 cut(s) 54, 311, 591, 823
Bsh1236I CGCG 1 cut(s) 701
BshFI GGCC 1 cut(s) 884
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 3 cut(s) 56, 205, 548
BslFI GGGAC 5 cut(s) 108, 438, 518, 530, 800
BslI CCNNNNNNNGG 3 cut(s) 112, 321, 640
BsmFI GGGAC 5 cut(s) 108, 438, 518, 530, 800
BsnI GGCC 1 cut(s) 884
BsoBI CYCGRG 1 cut(s) 547
Bsp119I TTCGAA 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 7 cut(s) 381, 524, 595, 657, 729, 871, 946
Bsp19I CCATGG 2 cut(s) 573, 906
BspACI CCGC 2 cut(s) 170, 737
BspANI GGCC 1 cut(s) 884
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 701
BspLI GGNNCC 3 cut(s) 96, 313, 393
BspMAI CTGCAG 1 cut(s) 44
BspMI ACCTGC 2 cut(s) 475, 915
BspPI GGATC 3 cut(s) 389, 590, 866
BspQI GCTCTTC 1 cut(s) 94
BspT104I TTCGAA 1 cut(s) 151
BsrDI GCAATG 3 cut(s) 294, 309, 598
BsrI ACTGG 2 cut(s) 788, 970
BssECI CCNNGG 4 cut(s) 203, 547, 573, 906
BssMI GATC 7 cut(s) 381, 524, 595, 657, 729, 871, 946
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 573, 906
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 3 cut(s) 240, 309, 983
Bst4CI ACNGT 2 cut(s) 223, 514
Bst6I CTCTTC 2 cut(s) 94, 351
BstAPI GCANNNNNTGC 1 cut(s) 836
BstBI TTCGAA 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 886
BstDEI CTNAG 3 cut(s) 79, 387, 999
BstDSI CCRYGG 2 cut(s) 573, 906
BstF5I GGATG 2 cut(s) 25, 89
BstFNI CGCG 1 cut(s) 701
BstHHI GCGC 1 cut(s) 703
BstKTI GATC 7 cut(s) 384, 527, 598, 660, 732, 874, 949
BstMBI GATC 7 cut(s) 381, 524, 595, 657, 729, 871, 946
BstMWI GCNNNNNNNGC 2 cut(s) 588, 836
BstNI CCWGG 3 cut(s) 240, 309, 983
BstSCI CCNGG 7 cut(s) 54, 203, 238, 307, 546, 547, 981
BstSFI CTRYAG 1 cut(s) 40
BstSLI GKGCMC 1 cut(s) 535
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 4 cut(s) 54, 311, 591, 823
BstX2I RGATCY 2 cut(s) 381, 871
BstYI RGATCY 2 cut(s) 381, 871
BsuRI GGCC 1 cut(s) 884
BtgI CCRYGG 2 cut(s) 573, 906
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 25, 89
BtsIMutI CAGTG 2 cut(s) 510, 849
BveI ACCTGC 2 cut(s) 475, 915
Cac8I GCNNGC 1 cut(s) 886
CfoI GCGC 1 cut(s) 703
Cfr13I GGNCC 1 cut(s) 95
Cfr9I CCCGGG 1 cut(s) 547
CsiI ACCWGGT 1 cut(s) 981
CviAII CATG 7 cut(s) 260, 376, 574, 635, 640, 907, 952
DdeI CTNAG 3 cut(s) 79, 387, 999
DpnI GATC 7 cut(s) 383, 526, 597, 659, 731, 873, 948
DpnII GATC 7 cut(s) 381, 524, 595, 657, 729, 871, 946
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 882
Eam1104I CTCTTC 2 cut(s) 94, 351
EarI CTCTTC 2 cut(s) 94, 351
EciI GGCGGA 1 cut(s) 752
Eco130I CCWWGG 2 cut(s) 573, 906
Eco47I GGWCC 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 614
EcoRII CCWGG 3 cut(s) 238, 307, 981
EcoT14I CCWWGG 2 cut(s) 573, 906
ErhI CCWWGG 2 cut(s) 573, 906
FaeI CATG 7 cut(s) 263, 379, 577, 638, 643, 910, 955
FalI AAGNNNNNCTT 2 cut(s) 927, 959
FaqI GGGAC 5 cut(s) 108, 438, 518, 530, 800
FatI CATG 7 cut(s) 259, 375, 573, 634, 639, 906, 951
FauI CCCGC 1 cut(s) 177
FbaI TGATCA 1 cut(s) 946
Fnu4HI GCNGC 4 cut(s) 43, 300, 580, 837
FokI GGATG 2 cut(s) 32, 96
Fsp4HI GCNGC 4 cut(s) 43, 300, 580, 837
FspBI CTAG 2 cut(s) 528, 542
GlaI GCGC 1 cut(s) 702
GluI GCNGC 4 cut(s) 43, 300, 580, 837
HaeIII GGCC 1 cut(s) 884
HapII CCGG 3 cut(s) 56, 205, 548
HhaI GCGC 1 cut(s) 703
Hin1II CATG 7 cut(s) 263, 379, 577, 638, 643, 910, 955
Hin6I GCGC 1 cut(s) 701
HinP1I GCGC 1 cut(s) 701
HincII GTYRAC 1 cut(s) 996
HindII GTYRAC 1 cut(s) 996
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 2 cut(s) 681, 788
HpaI GTTAAC 1 cut(s) 996
HpaII CCGG 3 cut(s) 56, 205, 548
HphI GGTGA 3 cut(s) 16, 456, 739
Hpy166II GTNNAC 1 cut(s) 996
Hpy188I TCNGA 7 cut(s) 66, 121, 140, 388, 623, 776, 896
Hpy188III TCNNGA 4 cut(s) 93, 190, 335, 944
Hpy8I GTNNAC 1 cut(s) 996
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 5 cut(s) 116, 173, 209, 407, 734
HpyCH4III ACNGT 2 cut(s) 223, 514
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 5 cut(s) 23, 42, 299, 757, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 588, 836
HpyF3I CTNAG 3 cut(s) 79, 387, 999
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 7 cut(s) 263, 379, 577, 638, 643, 910, 955
HspAI GCGC 1 cut(s) 701
Ksp22I TGATCA 1 cut(s) 946
KspAI GTTAAC 1 cut(s) 996
Kzo9I GATC 7 cut(s) 381, 524, 595, 657, 729, 871, 946
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 2 cut(s) 183, 261
Lsp1109I GCAGC 4 cut(s) 54, 311, 591, 823
LweI GCATC 2 cut(s) 10, 74
MabI ACCWGGT 1 cut(s) 981
MaeI CTAG 2 cut(s) 528, 542
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 3 cut(s) 231, 406, 812
MalI GATC 7 cut(s) 383, 526, 597, 659, 731, 873, 948
MboI GATC 7 cut(s) 381, 524, 595, 657, 729, 871, 946
MboII GAAGA 5 cut(s) 43, 81, 275, 338, 944
MflI RGATCY 2 cut(s) 381, 871
MhlI GDGCHC 1 cut(s) 535
MlsI TGGCCA 1 cut(s) 884
MluCI AATT 4 cut(s) 126, 614, 685, 890
MluNI TGGCCA 1 cut(s) 884
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 2 cut(s) 601, 654
Mox20I TGGCCA 1 cut(s) 884
MroXI GAANNNNTTC 2 cut(s) 212, 939
MscI TGGCCA 1 cut(s) 884
MseI TTAA 4 cut(s) 453, 477, 978, 995
MslI CAYNNNNRTG 1 cut(s) 572
Msp20I TGGCCA 1 cut(s) 884
MspI CCGG 3 cut(s) 56, 205, 548
MspR9I CCNGG 7 cut(s) 56, 205, 240, 309, 548, 549, 983
MvaI CCWGG 3 cut(s) 240, 309, 983
MvnI CGCG 1 cut(s) 701
MwoI GCNNNNNNNGC 2 cut(s) 588, 836
NciI CCSGG 4 cut(s) 56, 205, 548, 549
NcoI CCATGG 2 cut(s) 573, 906
NdeII GATC 7 cut(s) 381, 524, 595, 657, 729, 871, 946
NlaIII CATG 7 cut(s) 263, 379, 577, 638, 643, 910, 955
NlaIV GGNNCC 3 cut(s) 96, 313, 393
NmuCI GTSAC 1 cut(s) 812
NspV TTCGAA 1 cut(s) 151
PaqCI CACCTGC 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 94
PdmI GAANNNNTTC 2 cut(s) 212, 939
PfeI GAWTC 1 cut(s) 681
PflMI CCANNNNNTGG 1 cut(s) 640
PfoI TCCNGGA 1 cut(s) 54
PkrI GCNGC 4 cut(s) 44, 301, 581, 838
PleI GAGTC 1 cut(s) 782
PpsI GAGTC 1 cut(s) 782
Psp6I CCWGG 3 cut(s) 238, 307, 981
PspGI CCWGG 3 cut(s) 238, 307, 981
PspN4I GGNNCC 3 cut(s) 96, 313, 393
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 44
PsuI RGATCY 2 cut(s) 381, 871
RseI CAYNNNNRTG 1 cut(s) 572
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 4 cut(s) 453, 477, 978, 995
SatI GCNGC 4 cut(s) 43, 300, 580, 837
Sau3AI GATC 7 cut(s) 381, 524, 595, 657, 729, 871, 946
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 7 cut(s) 56, 205, 240, 309, 548, 549, 983
SduI GDGCHC 1 cut(s) 535
SexAI ACCWGGT 1 cut(s) 981
SfaNI GCATC 2 cut(s) 10, 74
SfcI CTRYAG 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 151
SinI GGWCC 1 cut(s) 95
SmaI CCCGGG 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 572
Sse9I AATT 4 cut(s) 126, 614, 685, 890
SsiI CCGC 2 cut(s) 170, 737
SspMI CTAG 2 cut(s) 528, 542
StyD4I CCNGG 7 cut(s) 54, 203, 238, 307, 546, 547, 981
StyI CCWWGG 2 cut(s) 573, 906
TaaI ACNGT 2 cut(s) 223, 514
TaiI ACGT 1 cut(s) 149
TaqI TCGA 3 cut(s) 151, 660, 732
TasI AATT 4 cut(s) 126, 614, 685, 890
TfiI GAWTC 1 cut(s) 681
Tru1I TTAA 4 cut(s) 453, 477, 978, 995
Tru9I TTAA 4 cut(s) 453, 477, 978, 995
TscAI CASTG 2 cut(s) 517, 856
TseFI GTSAC 1 cut(s) 812
TseI GCWGC 4 cut(s) 42, 299, 579, 836
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 6 cut(s) 276, 283, 347, 351, 495, 964
TspMI CCCGGG 1 cut(s) 547
TspRI CASTG 2 cut(s) 517, 856
Van91I CCANNNNNTGG 1 cut(s) 640
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XmaI CCCGGG 1 cut(s) 547
XmnI GAANNNNTTC 2 cut(s) 212, 939
XspI CTAG 2 cut(s) 528, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.