AT3G11480

carboxyl

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000342
Physical Location & Seq
Forward (+)
3614421 .. 3617342
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11480.1

Sequence Viewer

Length: 1140 bp
ATGGATCCAAGATTCATCAACACCATTCCTTCCTTGAGGTATGATGATGATAAGTGTGATGATGAATATGCGTTTGTGAAAGCTCTATGTATGAGTGGTGGAGATGGTGCCAACAGTTACTCCGCCAATTCTCGCCTTCAGAAAAAAGTTTTATCAATGGCCAAACCAGTCTTGGTAAGAAACACAGAAGAAATGATGATGAACTTAGACTTTCCTACGTACATCAAAGTTGCTGAATTGGGTTGTTCTTCGGGACAAAACTCTTTTTTGGCTATCTTTGAGATCATCAACACCATTAATGTGTTGTGCCAACATGTGAACAAAAACTCACCAGAGATCGATTGTTGTCTAAACGATCTCCCGGAAAATGATTTCAACACGACCTTTAAGTTCGTACCTTTCTTCAACAAGGAGCTCATGATCACAAACAAATCATCATGTTTCGTCTATGGAGCTCCAGGTTCCTTCTATTCCAGGCTCTTCTCTCGCAATAGCCTCCATTTAATACATTCCTCTTATGCACTCCATTGGCTCTCTAAGGTTCCCGAGAAACTTGAGAATAATAAGGGGAATCTGTACATAACAAGTTCAAGTCCTCAAAGTGCATACAAGGCCTACTTGAATCAATTCCAAAAAGACTTCACCATGTTTCTAAGGTTACGTTCTGAAGAAATTGTCTCTAATGGACGTATGGTTCTCACCTTCATCGGAAGAAACACTCTTAACGATCCATTGTATAGAGATTGTTGTCACTTTTGGACATTGCTATCAAACTCTCTCCGTGACCTAGTCTTTGAGGGTCTTGTGAGTGAGTCAAAGCTGGACGCATTCAACATGCCGTTTTATGATCCGAACGTACAAGAACTCAAAGAAGTGATACAAAAAGAGGGCTCTTTTGAAATCAATGAATTGGAGTCACATGGATTTGATCTTGGTCACTACTACGAAGAAGATGACTTTGAAGCAGGACGCAATGAAGCTAATGGCATAAGAGCTGTTAGTGAACCAATGCTCATTGCTCATTTTGGAGAAGAAATTATCGATACCTTGTTCGATAAGTATGCATACCATGTGACTCAACATGCCAACTGCAGGAACAAAACGACTGTCAGTCTTGTCGTTTCCTTGACTAAGAAGTAA

Protein Analysis

379

Amino Acids

43.36

Weight (kDa)

5.36

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 62 - 378 3.2e-122 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AciI CCGC 1 cut(s) 123
AclWI GGATC 3 cut(s) 12, 722, 842
AcoI YGGCCR 1 cut(s) 159
AcuI CTGAAG 2 cut(s) 122, 687
AfaI GTAC 4 cut(s) 221, 396, 578, 858
AfiI CCNNNNNNNGG 1 cut(s) 1092
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 7 cut(s) 376, 406, 591, 622, 832, 899, 962
AhdI GACNNNNNGTC 1 cut(s) 1110
AjnI CCWGG 2 cut(s) 457, 473
AloI GAACNNNNNNTCC 2 cut(s) 678, 710
AluBI AGCT 6 cut(s) 83, 415, 455, 820, 980, 995
AluI AGCT 6 cut(s) 83, 415, 455, 820, 980, 995
Alw21I GWGCWC 2 cut(s) 417, 457
Alw26I GTCTC 1 cut(s) 682
AlwI GGATC 3 cut(s) 12, 722, 842
Ama87I CYCGRG 1 cut(s) 545
AoxI GGCC 2 cut(s) 159, 612
ArsI GACNNNNNNTTYG 4 cut(s) 776, 808, 1092, 1124
AseI ATTAAT 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 626
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 3 cut(s) 321, 634, 691
AvaI CYCGRG 1 cut(s) 545
BalI TGGCCA 1 cut(s) 161
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 3 cut(s) 417, 457, 893
Bbv12I GWGCWC 2 cut(s) 417, 457
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 823
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BciT130I CCWGG 2 cut(s) 459, 475
BclI TGATCA 1 cut(s) 420
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 682
BfaI CTAG 1 cut(s) 788
BfmI CTRYAG 1 cut(s) 1090
Bme1390I CCNGG 3 cut(s) 362, 459, 475
BmeRI GACNNNNNGTC 1 cut(s) 1110
BmeT110I CYCGRG 1 cut(s) 545
BmiI GGNNCC 4 cut(s) 6, 109, 463, 543
BmrFI CCNGG 3 cut(s) 362, 459, 475
BpmI CTGGAG 1 cut(s) 441
BpuEI CTTGAG 2 cut(s) 55, 575
BpuMI CCSGG 1 cut(s) 362
Bsa29I ATCGAT 2 cut(s) 339, 1041
BsaAI YACGTR 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 1092
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 3 cut(s) 761, 979, 1014
BseBI CCWGG 2 cut(s) 459, 475
BseCI ATCGAT 2 cut(s) 339, 1041
BseLI CCNNNNNNNGG 1 cut(s) 1092
BseMI GCAATG 3 cut(s) 761, 979, 1014
BseNI ACTGG 1 cut(s) 167
BshFI GGCC 2 cut(s) 161, 614
BshNI GGYRCC 1 cut(s) 107
BshVI ATCGAT 2 cut(s) 339, 1041
BsiHKAI GWGCWC 2 cut(s) 417, 457
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 1092
BsmAI GTCTC 1 cut(s) 682
BsmFI GGGAC 1 cut(s) 267
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 2 cut(s) 161, 614
BsoBI CYCGRG 1 cut(s) 545
Bsp1286I GDGCHC 3 cut(s) 417, 457, 893
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 8 cut(s) 4, 282, 336, 355, 420, 727, 847, 928
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 161, 614
BspDI ATCGAT 2 cut(s) 339, 1041
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 4 cut(s) 6, 109, 463, 543
BspMAI CTGCAG 1 cut(s) 1094
BspPI GGATC 3 cut(s) 12, 722, 842
BspQI GCTCTTC 1 cut(s) 485
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 3 cut(s) 761, 979, 1014
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 1 cut(s) 167
BssMI GATC 8 cut(s) 4, 282, 336, 355, 420, 727, 847, 928
Bst2UI CCWGG 2 cut(s) 459, 475
Bst4CI ACNGT 2 cut(s) 116, 1108
Bst6I CTCTTC 1 cut(s) 485
BstAUI TGTACA 1 cut(s) 576
BstBAI YACGTR 1 cut(s) 219
BstDEI CTNAG 4 cut(s) 205, 537, 653, 1131
BstKTI GATC 8 cut(s) 7, 285, 339, 358, 423, 730, 850, 931
BstMAI GTCTC 1 cut(s) 682
BstMBI GATC 8 cut(s) 4, 282, 336, 355, 420, 727, 847, 928
BstMWI GCNNNNNNNGC 1 cut(s) 611
BstNI CCWGG 2 cut(s) 459, 475
BstNSI RCATGY 3 cut(s) 317, 838, 1085
BstSCI CCNGG 3 cut(s) 360, 457, 473
BstSFI CTRYAG 1 cut(s) 1090
BstSNI TACGTA 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 2 cut(s) 339, 1041
BsuRI GGCC 2 cut(s) 161, 614
BsuTUI ATCGAT 2 cut(s) 339, 1041
CciI TCATGA 1 cut(s) 417
ClaI ATCGAT 2 cut(s) 339, 1041
CseI GACGC 2 cut(s) 833, 978
Csp6I GTAC 4 cut(s) 220, 395, 577, 857
CviAII CATG 8 cut(s) 314, 418, 438, 646, 835, 920, 1070, 1082
CviQI GTAC 4 cut(s) 220, 395, 577, 857
DdeI CTNAG 4 cut(s) 205, 537, 653, 1131
DpnI GATC 8 cut(s) 6, 284, 338, 357, 422, 729, 849, 930
DpnII GATC 8 cut(s) 4, 282, 336, 355, 420, 727, 847, 928
DriI GACNNNNNGTC 1 cut(s) 1110
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 485
Eam1105I GACNNNNNGTC 1 cut(s) 1110
EarI CTCTTC 1 cut(s) 485
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 2 cut(s) 415, 455
Eco105I TACGTA 1 cut(s) 219
Eco147I AGGCCT 1 cut(s) 614
Eco24I GRGCYC 3 cut(s) 417, 457, 893
Eco53kI GAGCTC 2 cut(s) 415, 455
Eco57I CTGAAG 2 cut(s) 122, 687
Eco88I CYCGRG 1 cut(s) 545
EcoICRI GAGCTC 2 cut(s) 415, 455
EcoRII CCWGG 2 cut(s) 457, 473
EcoT22I ATGCAT 1 cut(s) 1066
EcoT38I GRGCYC 3 cut(s) 417, 457, 893
FaeI CATG 8 cut(s) 317, 421, 441, 649, 838, 923, 1073, 1085
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 1 cut(s) 267
FatI CATG 8 cut(s) 313, 417, 437, 645, 834, 919, 1069, 1081
FbaI TGATCA 1 cut(s) 420
FriOI GRGCYC 3 cut(s) 417, 457, 893
FspBI CTAG 1 cut(s) 788
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 2 cut(s) 161, 614
HapII CCGG 1 cut(s) 362
HgaI GACGC 2 cut(s) 833, 978
Hin1II CATG 8 cut(s) 317, 421, 441, 649, 838, 923, 1073, 1085
HinfI GANTC 6 cut(s) 12, 571, 622, 812, 914, 1075
HpaII CCGG 1 cut(s) 362
HphI GGTGA 3 cut(s) 321, 634, 691
Hpy166II GTNNAC 2 cut(s) 319, 1004
Hpy188I TCNGA 4 cut(s) 141, 667, 710, 852
Hpy188III TCNNGA 3 cut(s) 252, 418, 545
Hpy8I GTNNAC 2 cut(s) 319, 1004
HpyAV CCTTC 4 cut(s) 39, 146, 475, 712
HpyCH4III ACNGT 2 cut(s) 116, 1108
HpyCH4IV ACGT 4 cut(s) 218, 661, 688, 855
HpyCH4V TGCA 4 cut(s) 521, 605, 1064, 1092
HpyF10VI GCNNNNNNNGC 1 cut(s) 611
HpyF3I CTNAG 4 cut(s) 205, 537, 653, 1131
HpySE526I ACGT 4 cut(s) 218, 661, 688, 855
Hsp92II CATG 8 cut(s) 317, 421, 441, 649, 838, 923, 1073, 1085
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 8 cut(s) 4, 282, 336, 355, 420, 727, 847, 928
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 3 cut(s) 412, 452, 460
MaeI CTAG 1 cut(s) 788
MaeII ACGT 4 cut(s) 218, 661, 688, 855
MaeIII GTNAC 7 cut(s) 116, 657, 749, 782, 915, 935, 1072
MalI GATC 8 cut(s) 6, 284, 338, 357, 422, 729, 849, 930
MboI GATC 8 cut(s) 4, 282, 336, 355, 420, 727, 847, 928
MboII GAAGA 9 cut(s) 200, 240, 394, 472, 680, 723, 959, 962, 1043
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 417, 457, 893
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 6 cut(s) 127, 236, 626, 672, 908, 1035
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 3 cut(s) 821, 923, 1069
MnlI CCTC 6 cut(s) 30, 506, 523, 606, 790, 880
Mox20I TGGCCA 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 1066
MroXI GAANNNNTTC 1 cut(s) 626
MscI TGGCCA 1 cut(s) 161
MseI TTAA 4 cut(s) 297, 387, 503, 723
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 161
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 3 cut(s) 362, 459, 475
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 2 cut(s) 459, 475
MwoI GCNNNNNNNGC 1 cut(s) 611
NciI CCSGG 1 cut(s) 362
NdeII GATC 8 cut(s) 4, 282, 336, 355, 420, 727, 847, 928
NlaIII CATG 8 cut(s) 317, 421, 441, 649, 838, 923, 1073, 1085
NlaIV GGNNCC 4 cut(s) 6, 109, 463, 543
NmuCI GTSAC 5 cut(s) 749, 782, 915, 935, 1072
NsiI ATGCAT 1 cut(s) 1066
NspI RCATGY 3 cut(s) 317, 838, 1085
PagI TCATGA 1 cut(s) 417
PceI AGGCCT 1 cut(s) 614
PciI ACATGT 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 485
PctI GAATGC 1 cut(s) 827
PdmI GAANNNNTTC 1 cut(s) 626
PfeI GAWTC 3 cut(s) 12, 571, 622
PflFI GACNNNGTC 1 cut(s) 788
PfoI TCCNGGA 1 cut(s) 360
PleI GAGTC 3 cut(s) 820, 922, 1069
PpsI GAGTC 3 cut(s) 820, 922, 1069
Ppu21I YACGTR 1 cut(s) 219
PscI ACATGT 1 cut(s) 313
PshBI ATTAAT 1 cut(s) 297
Psp124BI GAGCTC 2 cut(s) 417, 457
Psp6I CCWGG 2 cut(s) 457, 473
PspGI CCWGG 2 cut(s) 457, 473
PspN4I GGNNCC 4 cut(s) 6, 109, 463, 543
PstI CTGCAG 1 cut(s) 1094
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 788
RsaI GTAC 4 cut(s) 221, 396, 578, 858
RsaNI GTAC 4 cut(s) 220, 395, 577, 857
RseI CAYNNNNRTG 1 cut(s) 299
SacI GAGCTC 2 cut(s) 417, 457
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 4 cut(s) 297, 387, 503, 723
Sau3AI GATC 8 cut(s) 4, 282, 336, 355, 420, 727, 847, 928
SchI GAGTC 3 cut(s) 821, 923, 1069
ScrFI CCNGG 3 cut(s) 362, 459, 475
SduI GDGCHC 3 cut(s) 417, 457, 893
SfcI CTRYAG 1 cut(s) 1090
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 2 cut(s) 34, 554
SmoI CTYRAG 2 cut(s) 34, 554
SnaBI TACGTA 1 cut(s) 219
Sse9I AATT 6 cut(s) 127, 236, 626, 672, 908, 1035
SseBI AGGCCT 1 cut(s) 614
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 788
SstI GAGCTC 2 cut(s) 417, 457
StuI AGGCCT 1 cut(s) 614
StyD4I CCNGG 3 cut(s) 360, 457, 473
TaaI ACNGT 2 cut(s) 116, 1108
TaiI ACGT 4 cut(s) 221, 664, 691, 858
TaqI TCGA 3 cut(s) 339, 1041, 1053
TasI AATT 6 cut(s) 127, 236, 626, 672, 908, 1035
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 3 cut(s) 12, 571, 622
Tru1I TTAA 4 cut(s) 297, 387, 503, 723
Tru9I TTAA 4 cut(s) 297, 387, 503, 723
TseFI GTSAC 5 cut(s) 749, 782, 915, 935, 1072
Tsp45I GTSAC 5 cut(s) 749, 782, 915, 935, 1072
TspDTI ATGAA 6 cut(s) 4, 78, 215, 694, 921, 990
TspGWI ACGGA 1 cut(s) 770
Tth111I GACNNNGTC 1 cut(s) 788
VspI ATTAAT 1 cut(s) 297
XceI RCATGY 3 cut(s) 317, 838, 1085
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 626
XspI CTAG 1 cut(s) 788
Zsp2I ATGCAT 1 cut(s) 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.