Rmu_co8237181.1_g000001

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8237181.1
OG0000342
Physical Location & Seq
Forward (+)
1 .. 621
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8237181.1_g000001.1.cds

Sequence Viewer

Length: 541 bp
ggactgcactgtctttctgaggtctcgagcacaagagctggtctcgggaggtagtatggtcctcacaaccatgggcagcatacggagcaatgatcccctcagcatttgggaatttgtcggactaaaactccatgacatggttttagatggtttgattgaagagaaaaaattggacacatttaatatgccatactatgcgtcaacagcggatgaggtgaaagaggtgattgaggctgaaggttcttttattttacaaaacctcgaaacttttagaaatgactgggactgttacataaaacaagttaactgtggctttgacaagaaagtgagggcagcaataatatccattgacataagagctgtgggagagcctattctctggccagcggattcagagaaaaagccatggatgatttgttttgcaggtttgaagaagatgttcttgatcacatggacaaggataactgccagttcattgacctggttatctcgtttgttggaaattttggagatggatgatgctttgagtaagaacttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

179

Amino Acids

20.38

Weight (kDa)

4.9

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 9
Acc36I ACCTGC 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 137
AciI CCGC 2 cut(s) 207, 387
AclWI GGATC 1 cut(s) 87
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 2 cut(s) 111, 502
AcuI CTGAAG 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 159, 431
AjnI CCWGG 1 cut(s) 480
AluBI AGCT 2 cut(s) 38, 360
AluI AGCT 2 cut(s) 38, 360
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 2 cut(s) 28, 47
AlwI GGATC 1 cut(s) 87
Ama87I CYCGRG 2 cut(s) 25, 44
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 2 cut(s) 76, 333
ApoI RAATTY 2 cut(s) 111, 502
Asp700I GAANNNNTTC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 227, 236
AvaI CYCGRG 2 cut(s) 25, 44
AvaII GGWCC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 88, 345
BccI CCATC 2 cut(s) 141, 506
BciT130I CCWGG 1 cut(s) 482
BclI TGATCA 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 28, 47
BfuAI ACCTGC 1 cut(s) 414
BisI GCNGC 2 cut(s) 77, 334
BlsI GCNGC 2 cut(s) 78, 335
Bme1390I CCNGG 1 cut(s) 482
Bme18I GGWCC 1 cut(s) 59
BmeT110I CYCGRG 2 cut(s) 25, 44
BmgT120I GGNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 482
BmrI ACTGGG 1 cut(s) 290
BmsI GCATC 1 cut(s) 509
BmuI ACTGGG 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 27, 59
Bpu10I CCTNAGC 1 cut(s) 99
BsaI GGTCTC 2 cut(s) 28, 47
BsaJI CCNNGG 2 cut(s) 70, 405
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 285, 469
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 2 cut(s) 70, 405
BseGI GGATG 3 cut(s) 215, 415, 521
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 9, 113
BseNI ACTGG 2 cut(s) 285, 469
BseXI GCAGC 2 cut(s) 88, 345
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 2 cut(s) 25, 44
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 2 cut(s) 28, 47
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 1 cut(s) 383
Bso31I GGTCTC 2 cut(s) 28, 47
BsoBI CYCGRG 2 cut(s) 25, 44
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 92, 445
Bsp19I CCATGG 2 cut(s) 70, 405
BspACI CCGC 2 cut(s) 207, 387
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 2 cut(s) 10, 112
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 1 cut(s) 87
BspTNI GGTCTC 2 cut(s) 28, 47
BsrDI GCAATG 1 cut(s) 95
BsrI ACTGG 2 cut(s) 285, 469
BssECI CCNNGG 2 cut(s) 70, 405
BssMI GATC 2 cut(s) 92, 445
BssT1I CCWWGG 2 cut(s) 70, 405
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 3 cut(s) 11, 288, 309
Bst6I CTCTTC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 2 cut(s) 18, 99
BstDSI CCRYGG 2 cut(s) 70, 405
BstF5I GGATG 3 cut(s) 215, 415, 521
BstKTI GATC 2 cut(s) 95, 448
BstMAI GTCTC 2 cut(s) 28, 47
BstMBI GATC 2 cut(s) 92, 445
BstMWI GCNNNNNNNGC 2 cut(s) 85, 204
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 480
BstV1I GCAGC 2 cut(s) 88, 345
BsuRI GGCC 1 cut(s) 383
BtgI CCRYGG 2 cut(s) 70, 405
BtsCI GGATG 3 cut(s) 215, 415, 521
BtsIMutI CAGTG 1 cut(s) 7
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 59
CseI GACGC 1 cut(s) 187
CsiI ACCWGGT 1 cut(s) 480
CviAII CATG 5 cut(s) 71, 132, 137, 406, 451
CviJI RGCY 7 cut(s) 38, 234, 313, 360, 371, 383, 404
CviKI_1 RGCY 7 cut(s) 38, 234, 313, 360, 371, 383, 404
DdeI CTNAG 2 cut(s) 18, 99
DpnI GATC 2 cut(s) 94, 447
DpnII GATC 2 cut(s) 92, 445
DrdI GACNNNNNNGTC 1 cut(s) 9
DseDI GACNNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 70, 405
Eco31I GGTCTC 2 cut(s) 28, 47
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 256
Eco88I CYCGRG 2 cut(s) 25, 44
EcoRII CCWGG 1 cut(s) 480
EcoT14I CCWWGG 2 cut(s) 70, 405
ErhI CCWWGG 2 cut(s) 70, 405
FaeI CATG 5 cut(s) 74, 135, 140, 409, 454
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 1 cut(s) 297
FatI CATG 5 cut(s) 70, 131, 136, 405, 450
FbaI TGATCA 1 cut(s) 445
Fnu4HI GCNGC 2 cut(s) 77, 334
FokI GGATG 3 cut(s) 222, 422, 528
Fsp4HI GCNGC 2 cut(s) 77, 334
GluI GCNGC 2 cut(s) 77, 334
HaeIII GGCC 1 cut(s) 383
HgaI GACGC 1 cut(s) 187
Hin1II CATG 5 cut(s) 74, 135, 140, 409, 454
HincII GTYRAC 2 cut(s) 202, 305
HindII GTYRAC 2 cut(s) 202, 305
HinfI GANTC 1 cut(s) 390
HpaI GTTAAC 1 cut(s) 305
HphI GGTGA 2 cut(s) 227, 236
Hpy166II GTNNAC 2 cut(s) 202, 305
Hpy188I TCNGA 3 cut(s) 19, 120, 395
Hpy188III TCNNGA 3 cut(s) 25, 46, 443
Hpy8I GTNNAC 2 cut(s) 202, 305
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 3 cut(s) 11, 288, 309
HpyCH4V TGCA 2 cut(s) 7, 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 204
HpyF3I CTNAG 2 cut(s) 18, 99
Hsp92II CATG 5 cut(s) 74, 135, 140, 409, 454
Ksp22I TGATCA 1 cut(s) 445
KspAI GTTAAC 1 cut(s) 305
Kzo9I GATC 2 cut(s) 92, 445
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 8 cut(s) 24, 266, 365, 397, 409, 467, 482, 494
Lsp1109I GCAGC 2 cut(s) 88, 345
LweI GCATC 1 cut(s) 509
MabI ACCWGGT 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 288
MalI GATC 2 cut(s) 94, 447
MboI GATC 2 cut(s) 92, 445
MboII GAAGA 3 cut(s) 171, 443, 446
MhlI GDGCHC 1 cut(s) 32
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 3 cut(s) 111, 168, 502
MluNI TGGCCA 1 cut(s) 383
MmeI TCCRAC 2 cut(s) 98, 478
MnlI CCTC 9 cut(s) 13, 42, 72, 108, 206, 215, 224, 270, 322
Mox20I TGGCCA 1 cut(s) 383
MroXI GAANNNNTTC 1 cut(s) 438
MscI TGGCCA 1 cut(s) 383
MseI TTAA 2 cut(s) 181, 304
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 207, 387
MspR9I CCNGG 1 cut(s) 482
MvaI CCWGG 1 cut(s) 482
MwoI GCNNNNNNNGC 2 cut(s) 85, 204
NcoI CCATGG 2 cut(s) 70, 405
NdeII GATC 2 cut(s) 92, 445
NlaIII CATG 5 cut(s) 74, 135, 140, 409, 454
PaeR7I CTCGAG 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 390
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 2 cut(s) 78, 335
Psp6I CCWGG 1 cut(s) 480
PspGI CCWGG 1 cut(s) 480
PspPI GGNCC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 2 cut(s) 181, 304
SatI GCNGC 2 cut(s) 77, 334
Sau3AI GATC 2 cut(s) 92, 445
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 1 cut(s) 32
SexAI ACCWGGT 1 cut(s) 480
SfaNI GCATC 1 cut(s) 509
Sfr274I CTCGAG 1 cut(s) 25
SinI GGWCC 1 cut(s) 59
SlaI CTCGAG 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 3 cut(s) 111, 168, 502
SsiI CCGC 2 cut(s) 207, 387
StyD4I CCNGG 1 cut(s) 480
StyI CCWWGG 2 cut(s) 70, 405
TaaI ACNGT 3 cut(s) 11, 288, 309
TaqI TCGA 2 cut(s) 26, 262
TasI AATT 3 cut(s) 111, 168, 502
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 2 cut(s) 181, 304
Tru9I TTAA 2 cut(s) 181, 304
TscAI CASTG 1 cut(s) 14
TseI GCWGC 2 cut(s) 76, 333
TspDTI ATGAA 1 cut(s) 463
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 14
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 2 cut(s) 111, 502
XhoI CTCGAG 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.