Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000342

Physical Location & Seq

Genomic Coordinates Reverse (-)

340856 .. 342881

Gene Structure 2026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0004200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTCTTCTCCAGTCTGCCACTCTCCCTCCTCTTCGCTCCATTTGCTGCTCCACTCCGTCGAAACATCCGATCACTTACCCTTCTTCCATTTCAAGCTCAGGCTCAGGCTCAGGCTCAAGCTCAGGCTCAAGCTCAAGCTCTAGCTCTAGCTCTAGCTCTAGCTTGGTGGGCTTGGTGAGGCGGAAGACGGCCTTTGCGGTCAGGTCTAGCTTGGACACTGCCGCCACCGTCGGCCAGGTCACCGAGGTCGACAAGGACACCTTCTGGCCAATCGTCAATGCCGCCGGCGACAAGACCGTCGTCCTTGATATGTACACCCAATGGTGTGGTCCTTGCAAGATTATAGCTCCAAAATATGTAGAATTGTCACAGAAATATGACGATGTCATATTTTTGAAGCTTGATTGTAACCAAGAAAATAAGCAGCCATTGGCAAAGGAGCTTGGAATAAGGGTGGTTCCGACTTTCAAGATTTTGAAGCATGACAAGGTTGTAAAAGAAGTGACAGGGGCCAAATTTGATGATTTAGTTGCTGCCATAGAGACTGTTAGAACGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

187

Amino Acids

19.95

Weight (kDa)

8.79

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	81 - 182	8.6e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca	FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica	MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica	Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis	pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis	RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata	RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora	Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii	Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa	Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha	Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana	Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	4 cut(s)	184, 200, 225, 285
AcoI	YGGCCR	2 cut(s)	235, 269
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	1 cut(s)	317
AgsI	TTSAA	4 cut(s)	96, 400, 472, 481
AjnI	CCWGG	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	539
AoxI	GGCC	4 cut(s)	192, 235, 269, 513
ApeKI	GCWGC	3 cut(s)	48, 427, 536
ApoI	RAATTY	1 cut(s)	518
AspS9I	GGNCC	2 cut(s)	332, 513
AsuHPI	GGTGA	2 cut(s)	190, 235
AvaII	GGWCC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	35, 439, 523
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	5 cut(s)	144, 150, 156, 162, 210
BisI	GCNGC	5 cut(s)	49, 225, 285, 428, 537
BlsI	GCNGC	5 cut(s)	50, 226, 286, 429, 538
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	332, 513
BmiI	GGNNCC	2 cut(s)	462, 514
BmrFI	CCNGG	1 cut(s)	239
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	194
Bpu10I	CCTNAGC	4 cut(s)	100, 106, 112, 124
BpuEI	CTTGAG	3 cut(s)	103, 115, 121
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	4 cut(s)	114, 120, 126, 138
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	35, 439, 523
BshFI	GGCC	4 cut(s)	194, 237, 271, 515
BsiSI	CCGG	1 cut(s)	288
BsmAI	GTCTC	1 cut(s)	539
BsnI	GGCC	4 cut(s)	194, 237, 271, 515
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	4 cut(s)	184, 200, 225, 285
BspANI	GGCC	4 cut(s)	194, 237, 271, 515
BspCNI	CTCAG	4 cut(s)	113, 119, 125, 137
BspLI	GGNNCC	2 cut(s)	462, 514
BspQI	GCTCTTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	232, 301, 550
Bst6I	CTCTTC	2 cut(s)	12, 39
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	4 cut(s)	100, 106, 112, 124
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 171
BstNI	CCWGG	1 cut(s)	239
BstPAI	GACNNNNGTC	1 cut(s)	302
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	35, 439, 523
BstV2I	GAAGAC	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	194, 237, 271, 515
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	332, 513
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	485
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	4 cut(s)	100, 106, 112, 124
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	2 cut(s)	235, 269
Eam1104I	CTCTTC	2 cut(s)	12, 39
EarI	CTCTTC	2 cut(s)	12, 39
EciI	GGCGGA	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	237
FaeI	CATG	1 cut(s)	488
FaiI	YATR	7 cut(s)	314, 347, 360, 381, 392, 486, 542
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 248, 280
FatI	CATG	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	49, 225, 285, 428, 537
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	5 cut(s)	49, 225, 285, 428, 537
FspBI	CTAG	5 cut(s)	144, 150, 156, 162, 210
GluI	GCNGC	5 cut(s)	49, 225, 285, 428, 537
HaeIII	GGCC	4 cut(s)	194, 237, 271, 515
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	401
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	190, 235
Hpy166II	GTNNAC	2 cut(s)	253, 318
Hpy188I	TCNGA	2 cut(s)	72, 465
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	2 cut(s)	253, 318
Hpy99I	CGWCG	3 cut(s)	64, 236, 305
HpyAV	CCTTC	2 cut(s)	93, 274
HpyCH4III	ACNGT	3 cut(s)	232, 301, 550
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 171
HpyF3I	CTNAG	4 cut(s)	100, 106, 112, 124
Hsp92II	CATG	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	4 cut(s)	44, 56, 355, 442
Lsp1109I	GCAGC	3 cut(s)	35, 439, 523
MaeI	CTAG	5 cut(s)	144, 150, 156, 162, 210
MaeIII	GTNAC	4 cut(s)	241, 369, 410, 505
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	26, 78, 199
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	2 cut(s)	365, 518
MluNI	TGGCCA	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	4 cut(s)	39, 42, 174, 241
Mox20I	TGGCCA	1 cut(s)	271
MreI	CGCCGGCG	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	271
Msp20I	TGGCCA	1 cut(s)	271
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	45, 171
NaeI	GCCGGC	1 cut(s)	289
NdeII	GATC	1 cut(s)	72
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	2 cut(s)	462, 514
NmuCI	GTSAC	3 cut(s)	241, 369, 505
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PdiI	GCCGGC	1 cut(s)	289
PflFI	GACNNNGTC	1 cut(s)	386
PkrI	GCNGC	5 cut(s)	50, 226, 286, 429, 538
PshAI	GACNNNNGTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	237
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	462, 514
PspPI	GGNCC	2 cut(s)	332, 513
PsyI	GACNNNGTC	1 cut(s)	386
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SalI	GTCGAC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	5 cut(s)	49, 225, 285, 428, 537
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	2 cut(s)	332, 513
ScrFI	CCNGG	1 cut(s)	239
SgrAI	CRCCGGYG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	3 cut(s)	118, 130, 136
SmoI	CTYRAG	3 cut(s)	118, 130, 136
Sse9I	AATT	2 cut(s)	365, 518
SsiI	CCGC	4 cut(s)	184, 200, 225, 285
SspMI	CTAG	5 cut(s)	144, 150, 156, 162, 210
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	3 cut(s)	232, 301, 550
TaqI	TCGA	2 cut(s)	62, 252
TasI	AATT	2 cut(s)	365, 518
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	2 cut(s)	227, 287
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	3 cut(s)	241, 369, 505
TseI	GCWGC	3 cut(s)	48, 427, 536
Tsp45I	GTSAC	3 cut(s)	241, 369, 505
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	5 cut(s)	144, 150, 156, 162, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.