Prupe.8G092900_v2.0.a1

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000342
Physical Location & Seq
Reverse (-)
12566255 .. 12567775
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G092900.2

Sequence Viewer

Length: 1059 bp
AATAACTTTCAGAGAGCAGTGATTTCAACGGTGAAGCCTATAGTTGATGCAAGCATAGAGGAGCTGTGTTGCACTCTCTTCCCAGAGTGTTTGAAAATAGCGGACTTGGGATGCTCTTCAGGACCCAACACCCTTTTGGTGGTATCAGATATCATAGACAACATCCGCAACACTTTCCAAAAGCTCAACCGCCCACCTCCATCACTCCAAGCCTTCTTGAATGATCTTCCCCGAAACGATTTCAACACGGTGTTCAGGTCATTGCCAGGCTTCTATAAGAAACTTGATGAAGAACCTGAAAAGAAGCTTGGGCCATGTTTCATTGCAGGAATGCCTGGCTCTTTCTATGGCAGGCTCTTCCCCGACAATTCTCTCCACTTTGTTCACTCTTCTTATGCTCTCATGTGGATCTCTGAGGTTCCAAAAGGCTTGGTGACCAAAGAAGGAGAGGCACTTAACAAGGGGAACATATATATAGCAAAGACAAGCCCTCCAGCTGTGTTTAACCAATACTTGGAGCAATTCAAAAGGGACTTCACAGTCTGTCTGAGGTCACGTGCCGAAGAGCTCGTCCCTGGGGGCAGTATGGTCCTCACAACCATGGGCAGCATTAAGAGTGACGATCCCCTCTGCATTTGGGAATTTATTTGGGACACATTAATTATTGCTAATTTGAAATGTACTTCGATGAATTTTCAGGGTTTGATTGAAGTGGAAAAATTGGACACATTCAATATGCCATACTATGCACCTACAACGAAGGAGATCGAAGAGGTGATCGAGGCTGAAGGATCTTTTATTTTGCAAAACCTTGAAGTTTTCAAAAATGATTGGGACTCTTATGTCAAGCAAGCGAACAGTGGCCTGGATAAGAAGACAAGGGCTGCAATATTTGCCACTGACATAAGGGCTGTGGGAGAGCCGATTCTGGCGAGCCAATTCGGAGAAGCACCCATGGACGATTTGTTTCGTAGGTTTGAAGCAGATGTTCTTGATCACATGGAAAGGGAAAACTGCCAGTTCATTAACCTGGTTATCTCGTTGACAAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

353

Amino Acids

39.76

Weight (kDa)

5.04

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 539, 842
AccB7I CCANNNNNTGG 1 cut(s) 514
AciI CCGC 3 cut(s) 101, 166, 190
AclWI GGATC 3 cut(s) 416, 617, 799
AcsI RAATTY 2 cut(s) 641, 691
AcuI CTGAAG 2 cut(s) 102, 807
AcvI CACGTG 1 cut(s) 557
AfaI GTAC 1 cut(s) 682
AfiI CCNNNNNNNGG 2 cut(s) 139, 514
AjnI CCWGG 5 cut(s) 265, 334, 574, 864, 1029
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 5 cut(s) 64, 184, 307, 497, 568
AluI AGCT 5 cut(s) 64, 184, 307, 497, 568
Alw21I GWGCWC 1 cut(s) 570
AlwI GGATC 3 cut(s) 416, 617, 799
AoxI GGCC 2 cut(s) 311, 862
ApeKI GCWGC 2 cut(s) 606, 884
ApoI RAATTY 2 cut(s) 641, 691
ArsI GACNNNNNNTTYG 2 cut(s) 555, 587
AseI ATTAAT 1 cut(s) 659
AspS9I GGNCC 3 cut(s) 122, 311, 589
AsuHPI GGTGA 3 cut(s) 43, 445, 787
AvaII GGWCC 2 cut(s) 122, 589
BanII GRGCYC 1 cut(s) 570
BbrPI CACGTG 1 cut(s) 557
BbsI GAAGAC 1 cut(s) 881
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 2 cut(s) 618, 871
BccI CCATC 1 cut(s) 208
BciT130I CCWGG 5 cut(s) 267, 336, 576, 866, 1031
BclI TGATCA 1 cut(s) 994
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 2 cut(s) 607, 885
BlsI GCNGC 2 cut(s) 608, 886
Bme1390I CCNGG 5 cut(s) 267, 336, 576, 866, 1031
Bme18I GGWCC 2 cut(s) 122, 589
BmgT120I GGNCC 3 cut(s) 122, 311, 589
BmiI GGNNCC 2 cut(s) 124, 420
BmrFI CCNGG 5 cut(s) 267, 336, 576, 866, 1031
BmsI GCATC 2 cut(s) 37, 101
BpiI GAAGAC 1 cut(s) 881
BpmI CTGGAG 1 cut(s) 477
BsaAI YACGTR 1 cut(s) 557
BsaJI CCNNGG 4 cut(s) 574, 575, 600, 954
BsaXI ACNNNNNCTCC 2 cut(s) 475, 505
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 514
Bse1I ACTGG 1 cut(s) 1018
Bse3DI GCAATG 2 cut(s) 260, 321
BseBI CCWGG 5 cut(s) 267, 336, 576, 866, 1031
BseDI CCNNGG 4 cut(s) 574, 575, 600, 954
BseGI GGATG 2 cut(s) 116, 162
BseLI CCNNNNNNNGG 2 cut(s) 139, 514
BseMI GCAATG 2 cut(s) 260, 321
BseMII CTCAG 2 cut(s) 405, 539
BseNI ACTGG 1 cut(s) 1018
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 618, 871
BshFI GGCC 2 cut(s) 313, 864
BsiHKAI GWGCWC 1 cut(s) 570
BslFI GGGAC 4 cut(s) 545, 557, 665, 848
BslI CCNNNNNNNGG 2 cut(s) 139, 514
BsmFI GGGAC 4 cut(s) 545, 557, 665, 848
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 2 cut(s) 313, 864
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 7 cut(s) 223, 408, 622, 765, 777, 791, 994
Bsp19I CCATGG 2 cut(s) 600, 954
BspACI CCGC 3 cut(s) 101, 166, 190
BspANI GGCC 2 cut(s) 313, 864
BspCNI CTCAG 2 cut(s) 406, 540
BspLI GGNNCC 2 cut(s) 124, 420
BspPI GGATC 3 cut(s) 416, 617, 799
BspQI GCTCTTC 3 cut(s) 121, 362, 558
BsrDI GCAATG 2 cut(s) 260, 321
BsrI ACTGG 1 cut(s) 1018
BssECI CCNNGG 4 cut(s) 574, 575, 600, 954
BssMI GATC 7 cut(s) 223, 408, 622, 765, 777, 791, 994
BssT1I CCWWGG 2 cut(s) 600, 954
Bst2UI CCWGG 5 cut(s) 267, 336, 576, 866, 1031
Bst4CI ACNGT 4 cut(s) 31, 250, 541, 860
Bst6I CTCTTC 6 cut(s) 83, 121, 362, 394, 558, 765
BstAPI GCANNNNNTGC 1 cut(s) 893
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 4 cut(s) 52, 353, 852, 934
BstDEI CTNAG 2 cut(s) 414, 548
BstDSI CCRYGG 2 cut(s) 600, 954
BstEII GGTNACC 1 cut(s) 433
BstF5I GGATG 2 cut(s) 116, 162
BstKTI GATC 7 cut(s) 226, 411, 625, 768, 780, 794, 997
BstMBI GATC 7 cut(s) 223, 408, 622, 765, 777, 791, 994
BstMWI GCNNNNNNNGC 1 cut(s) 893
BstNI CCWGG 5 cut(s) 267, 336, 576, 866, 1031
BstPI GGTNACC 1 cut(s) 433
BstSCI CCNGG 5 cut(s) 265, 334, 574, 864, 1029
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 618, 871
BstV2I GAAGAC 1 cut(s) 881
BstX2I RGATCY 2 cut(s) 408, 791
BstYI RGATCY 2 cut(s) 408, 791
BsuRI GGCC 2 cut(s) 313, 864
BtgI CCRYGG 2 cut(s) 600, 954
BtsCI GGATG 2 cut(s) 116, 162
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 3 cut(s) 24, 865, 897
Cac8I GCNNGC 4 cut(s) 52, 353, 852, 934
Cfr13I GGNCC 3 cut(s) 122, 311, 589
CsiI ACCWGGT 1 cut(s) 1029
Csp6I GTAC 1 cut(s) 681
CviAII CATG 5 cut(s) 315, 403, 601, 955, 1000
CviQI GTAC 1 cut(s) 681
DdeI CTNAG 2 cut(s) 414, 548
DpnI GATC 7 cut(s) 225, 410, 624, 767, 779, 793, 996
DpnII GATC 7 cut(s) 223, 408, 622, 765, 777, 791, 994
DrdI GACNNNNNNGTC 2 cut(s) 539, 842
DseDI GACNNNNNNGTC 2 cut(s) 539, 842
Eam1104I CTCTTC 6 cut(s) 83, 121, 362, 394, 558, 765
EarI CTCTTC 6 cut(s) 83, 121, 362, 394, 558, 765
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 2 cut(s) 600, 954
Eco24I GRGCYC 1 cut(s) 570
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 122, 589
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 2 cut(s) 102, 807
Eco72I CACGTG 1 cut(s) 557
Eco91I GGTNACC 1 cut(s) 433
EcoICRI GAGCTC 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 122
EcoO65I GGTNACC 1 cut(s) 433
EcoRII CCWGG 5 cut(s) 265, 334, 574, 864, 1029
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 2 cut(s) 600, 954
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 2 cut(s) 600, 954
FaeI CATG 5 cut(s) 318, 406, 604, 958, 1003
FaqI GGGAC 4 cut(s) 545, 557, 665, 848
FatI CATG 5 cut(s) 314, 402, 600, 954, 999
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 2 cut(s) 607, 885
FokI GGATG 2 cut(s) 123, 149
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 2 cut(s) 607, 885
GluI GCNGC 2 cut(s) 607, 885
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 2 cut(s) 313, 864
Hin1II CATG 5 cut(s) 318, 406, 604, 958, 1003
HincII GTYRAC 1 cut(s) 1044
HindII GTYRAC 1 cut(s) 1044
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 2 cut(s) 836, 925
HphI GGTGA 3 cut(s) 43, 445, 787
Hpy166II GTNNAC 2 cut(s) 385, 1044
Hpy188I TCNGA 5 cut(s) 12, 148, 415, 549, 944
Hpy188III TCNNGA 3 cut(s) 120, 217, 992
Hpy8I GTNNAC 2 cut(s) 385, 1044
HpyAV CCTTC 4 cut(s) 223, 437, 754, 782
HpyCH4III ACNGT 4 cut(s) 31, 250, 541, 860
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 7 cut(s) 50, 72, 326, 633, 749, 805, 887
HpyF10VI GCNNNNNNNGC 1 cut(s) 893
HpyF3I CTNAG 2 cut(s) 414, 548
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 5 cut(s) 318, 406, 604, 958, 1003
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 7 cut(s) 223, 408, 622, 765, 777, 791, 994
LguI GCTCTTC 3 cut(s) 121, 362, 558
LmnI GCTCC 2 cut(s) 61, 517
Lsp1109I GCAGC 2 cut(s) 618, 871
LweI GCATC 2 cut(s) 37, 101
MabI ACCWGGT 1 cut(s) 1029
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 3 cut(s) 433, 552, 617
MalI GATC 7 cut(s) 225, 410, 624, 767, 779, 793, 996
MboI GATC 7 cut(s) 223, 408, 622, 765, 777, 791, 994
MboII GAAGA 9 cut(s) 70, 108, 218, 302, 349, 381, 575, 782, 886
MflI RGATCY 2 cut(s) 408, 791
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 8 cut(s) 367, 521, 641, 660, 670, 691, 719, 938
MlyI GAGTC 1 cut(s) 830
MseI TTAA 5 cut(s) 456, 504, 612, 659, 1026
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 497
MspR9I CCNGG 5 cut(s) 267, 336, 576, 866, 1031
Mva1269I GAATGC 1 cut(s) 336
MvaI CCWGG 5 cut(s) 267, 336, 576, 866, 1031
MwoI GCNNNNNNNGC 1 cut(s) 893
NcoI CCATGG 2 cut(s) 600, 954
NdeII GATC 7 cut(s) 223, 408, 622, 765, 777, 791, 994
NlaIII CATG 5 cut(s) 318, 406, 604, 958, 1003
NlaIV GGNNCC 2 cut(s) 124, 420
NmuCI GTSAC 3 cut(s) 433, 552, 617
PasI CCCWGGG 1 cut(s) 575
PciSI GCTCTTC 3 cut(s) 121, 362, 558
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 925
PflMI CCANNNNNTGG 1 cut(s) 514
PkrI GCNGC 2 cut(s) 608, 886
PleI GAGTC 1 cut(s) 830
PmaCI CACGTG 1 cut(s) 557
PmlI CACGTG 1 cut(s) 557
PpsI GAGTC 1 cut(s) 830
Ppu21I YACGTR 1 cut(s) 557
PpuMI RGGWCCY 1 cut(s) 122
PshBI ATTAAT 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 570
Psp5II RGGWCCY 1 cut(s) 122
Psp6I CCWGG 5 cut(s) 265, 334, 574, 864, 1029
PspCI CACGTG 1 cut(s) 557
PspEI GGTNACC 1 cut(s) 433
PspGI CCWGG 5 cut(s) 265, 334, 574, 864, 1029
PspN4I GGNNCC 2 cut(s) 124, 420
PspPI GGNCC 3 cut(s) 122, 311, 589
PspPPI RGGWCCY 1 cut(s) 122
PsuI RGATCY 2 cut(s) 408, 791
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 682
RsaNI GTAC 1 cut(s) 681
RseI CAYNNNNRTG 1 cut(s) 599
SacI GAGCTC 1 cut(s) 570
SapI GCTCTTC 3 cut(s) 121, 362, 558
SaqAI TTAA 5 cut(s) 456, 504, 612, 659, 1026
SatI GCNGC 2 cut(s) 607, 885
Sau3AI GATC 7 cut(s) 223, 408, 622, 765, 777, 791, 994
Sau96I GGNCC 3 cut(s) 122, 311, 589
SchI GAGTC 1 cut(s) 830
ScrFI CCNGG 5 cut(s) 267, 336, 576, 866, 1031
SduI GDGCHC 1 cut(s) 570
SexAI ACCWGGT 1 cut(s) 1029
SfaNI GCATC 2 cut(s) 37, 101
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 2 cut(s) 122, 589
SmiMI CAYNNNNRTG 1 cut(s) 599
Sse9I AATT 8 cut(s) 367, 521, 641, 660, 670, 691, 719, 938
SsiI CCGC 3 cut(s) 101, 166, 190
SspI AATATT 1 cut(s) 891
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 5 cut(s) 265, 334, 574, 864, 1029
StyI CCWWGG 2 cut(s) 600, 954
TaaI ACNGT 4 cut(s) 31, 250, 541, 860
TaiI ACGT 1 cut(s) 559
TaqI TCGA 3 cut(s) 686, 768, 780
TasI AATT 8 cut(s) 367, 521, 641, 660, 670, 691, 719, 938
TatI WGTACW 1 cut(s) 680
TfiI GAWTC 1 cut(s) 925
Tru1I TTAA 5 cut(s) 456, 504, 612, 659, 1026
Tru9I TTAA 5 cut(s) 456, 504, 612, 659, 1026
TscAI CASTG 3 cut(s) 24, 865, 904
TseFI GTSAC 3 cut(s) 433, 552, 617
TseI GCWGC 2 cut(s) 606, 884
Tsp45I GTSAC 3 cut(s) 433, 552, 617
TspDTI ATGAA 4 cut(s) 303, 310, 704, 1012
TspRI CASTG 3 cut(s) 24, 865, 904
Van91I CCANNNNNTGG 1 cut(s) 514
VpaK11BI GGWCC 2 cut(s) 122, 589
VspI ATTAAT 1 cut(s) 659
XapI RAATTY 2 cut(s) 641, 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.