RchiOBHm_Chr1g0324461

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000342
Physical Location & Seq
Reverse (-)
12193314 .. 12196063
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55430

Sequence Viewer

Length: 879 bp
ATGGAGGTGGAGCAAGTCCTTCACATGAATGGCGGATATGGGAGAACAAGCTATTCAAACAACTCGCTTCTTCAAAGAGCAGTGATTTCATGGGTGAAGCCCATTTTTGATGCAAGCATAGAGAAGCTGTGTTGCGCCAACCTCCCTGCAGAGTGTTTGAGGATAGCTGACTTGGGATGTTCTTCAGGACCAAACACCCTTTTAGTCGTATCAAATGTCATCGACATGATCCAGAATACATGTCAAAAATTGAACCATCGACCTCCATCGCTCCAAGTATTTTTGAATGATCTTCCCCAAAACGACTTTAACACAGTTTTCAAATCATTGCCAAGCTTCTACAACAAACTCGAAGAAAGGAAGTGGTCGGAGCCATGCTTCATTGCAGGAATGCCCGGCTCTTTCTATGGCAGGCTCTTTCCTAAGAATTCTATCAACTTTTTTCACTCATCTTACTCTCTGCAGTGGATCTCTAAGGTTCCAAAAGGTTTGGTAACAAAAGGTGGACTCAACGAGGGAAACATTTGCACAGCCAAGACAAGCCCACCTTCTGTGTTTAATGAATACTTTGAGCAATTTAAAAACGACTTCACAGTGTTTCTAAGGTCTCGTGCAGAAGAGTTGGTCCCTCAGGGTAGAATGGTCCTCACAATCAGGGGGAGCATAAACAGTCATGAACCCCTCTCTATATTAGAATTTCTTGGATTGAAAATCAATGATATGGTTTTAGAGGGATTGATTGAAAAGCAAAACTTAGACTACTTCAATATTCCATACTTTGAACCTACAATGGAGGAACTGATGGATCTGATCGAGACCGAAGGATCCTTAGGTTGCATGACCATCAAGTTTTTAAACATGATTGGGACTCTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

292

Amino Acids

32.99

Weight (kDa)

5.5

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 39 - 284 9.4e-98 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 877
AciI CCGC 1 cut(s) 33
AclWI GGATC 5 cut(s) 223, 476, 813, 819, 832
AcsI RAATTY 2 cut(s) 427, 695
AcuI CTGAAG 1 cut(s) 168
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 9 cut(s) 57, 74, 253, 286, 322, 709, 743, 766, 782
AluBI AGCT 4 cut(s) 51, 127, 167, 336
AluI AGCT 4 cut(s) 51, 127, 167, 336
Alw26I GTCTC 2 cut(s) 612, 809
AlwI GGATC 5 cut(s) 223, 476, 813, 819, 832
ApoI RAATTY 2 cut(s) 427, 695
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 3 cut(s) 188, 625, 643
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 3 cut(s) 188, 625, 643
AxyI CCTNAGG 2 cut(s) 630, 829
BamHI GGATCC 1 cut(s) 824
BauI CACGAG 1 cut(s) 609
BccI CCATC 4 cut(s) 264, 274, 796, 851
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 2 cut(s) 612, 809
BfmI CTRYAG 2 cut(s) 147, 461
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 3 cut(s) 188, 625, 643
BmgT120I GGNCC 3 cut(s) 188, 625, 643
BmiI GGNNCC 4 cut(s) 372, 480, 627, 826
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 396
BsaI GGTCTC 2 cut(s) 612, 809
Bse21I CCTNAGG 2 cut(s) 630, 829
Bse3DI GCAATG 2 cut(s) 326, 381
BseGI GGATG 1 cut(s) 182
BseMI GCAATG 2 cut(s) 326, 381
BseMII CTCAG 1 cut(s) 644
BsgI GTGCAG 1 cut(s) 633
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 611
BsmAI GTCTC 2 cut(s) 612, 809
BsmFI GGGAC 1 cut(s) 611
BsmI GAATGC 1 cut(s) 396
Bso31I GGTCTC 2 cut(s) 612, 809
Bsp143I GATC 6 cut(s) 228, 289, 468, 805, 810, 824
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 643
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 4 cut(s) 372, 480, 627, 826
BspMAI CTGCAG 2 cut(s) 151, 465
BspPI GGATC 5 cut(s) 223, 476, 813, 819, 832
BspTNI GGTCTC 2 cut(s) 612, 809
BsrDI GCAATG 2 cut(s) 326, 381
BssMI GATC 6 cut(s) 228, 289, 468, 805, 810, 824
BssSI CACGAG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 609
Bst4CI ACNGT 3 cut(s) 316, 595, 671
Bst6I CTCTTC 1 cut(s) 612
BstC8I GCNNGC 2 cut(s) 115, 413
BstDEI CTNAG 6 cut(s) 423, 474, 602, 630, 754, 829
BstF5I GGATG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 6 cut(s) 231, 292, 471, 808, 813, 827
BstMAI GTCTC 2 cut(s) 612, 809
BstMBI GATC 6 cut(s) 228, 289, 468, 805, 810, 824
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 2 cut(s) 147, 461
BstX2I RGATCY 3 cut(s) 468, 805, 824
BstYI RGATCY 3 cut(s) 468, 805, 824
Bsu36I CCTNAGG 2 cut(s) 630, 829
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 182
BtsI GCAGTG 2 cut(s) 87, 470
BtsIMutI CAGTG 3 cut(s) 87, 470, 600
Cac8I GCNNGC 2 cut(s) 115, 413
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 188, 625, 643
CviAII CATG 8 cut(s) 25, 90, 226, 240, 375, 674, 838, 859
DdeI CTNAG 6 cut(s) 423, 474, 602, 630, 754, 829
DpnI GATC 6 cut(s) 230, 291, 470, 807, 812, 826
DpnII GATC 6 cut(s) 228, 289, 468, 805, 810, 824
DraI TTTAAA 2 cut(s) 580, 855
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
EciI GGCGGA 1 cut(s) 48
Eco31I GGTCTC 2 cut(s) 612, 809
Eco47I GGWCC 3 cut(s) 188, 625, 643
Eco57I CTGAAG 1 cut(s) 168
Eco81I CCTNAGG 2 cut(s) 630, 829
EcoRI GAATTC 1 cut(s) 427
FaeI CATG 8 cut(s) 28, 93, 229, 243, 378, 677, 841, 862
FalI AAGNNNNNCTT 4 cut(s) 532, 564, 737, 769
FaqI GGGAC 1 cut(s) 611
FatI CATG 8 cut(s) 24, 89, 225, 239, 374, 673, 837, 858
FokI GGATG 1 cut(s) 189
GlaI GCGC 1 cut(s) 136
HapII CCGG 1 cut(s) 396
HhaI GCGC 1 cut(s) 137
Hin1II CATG 8 cut(s) 28, 93, 229, 243, 378, 677, 841, 862
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 2 cut(s) 507, 868
HpaII CCGG 1 cut(s) 396
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 2 cut(s) 370, 810
Hpy188III TCNNGA 4 cut(s) 186, 232, 674, 814
Hpy8I GTNNAC 1 cut(s) 506
HpyAV CCTTC 3 cut(s) 29, 558, 815
HpyCH4III ACNGT 3 cut(s) 316, 595, 671
HpyCH4V TGCA 7 cut(s) 113, 149, 386, 463, 528, 614, 837
HpyF3I CTNAG 6 cut(s) 423, 474, 602, 630, 754, 829
Hsp92II CATG 8 cut(s) 28, 93, 229, 243, 378, 677, 841, 862
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 6 cut(s) 228, 289, 468, 805, 810, 824
LmnI GCTCC 4 cut(s) 10, 276, 370, 660
LpnPI CCDG 8 cut(s) 159, 171, 245, 372, 397, 409, 617, 640
LweI GCATC 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 493
MalI GATC 6 cut(s) 230, 291, 470, 807, 812, 826
MboI GATC 6 cut(s) 228, 289, 468, 805, 810, 824
MboII GAAGA 5 cut(s) 62, 174, 284, 365, 629
MflI RGATCY 3 cut(s) 468, 805, 824
MluCI AATT 4 cut(s) 248, 427, 575, 695
MlyI GAGTC 2 cut(s) 501, 862
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 9 cut(s) 152, 153, 273, 508, 639, 656, 692, 724, 787
MseI TTAA 4 cut(s) 309, 558, 579, 854
MslI CAYNNNNRTG 2 cut(s) 27, 224
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 396
NciI CCSGG 1 cut(s) 396
NdeII GATC 6 cut(s) 228, 289, 468, 805, 810, 824
NlaIII CATG 8 cut(s) 28, 93, 229, 243, 378, 677, 841, 862
NlaIV GGNNCC 4 cut(s) 372, 480, 627, 826
NspI RCATGY 1 cut(s) 243
PagI TCATGA 1 cut(s) 673
PciI ACATGT 1 cut(s) 239
PctI GAATGC 1 cut(s) 396
PleI GAGTC 2 cut(s) 501, 862
PpsI GAGTC 2 cut(s) 501, 862
PscI ACATGT 1 cut(s) 239
PsiI TTATAA 1 cut(s) 877
PspN4I GGNNCC 4 cut(s) 372, 480, 627, 826
PspPI GGNCC 3 cut(s) 188, 625, 643
PstI CTGCAG 2 cut(s) 151, 465
PsuI RGATCY 3 cut(s) 468, 805, 824
RseI CAYNNNNRTG 2 cut(s) 27, 224
SaqAI TTAA 4 cut(s) 309, 558, 579, 854
Sau3AI GATC 6 cut(s) 228, 289, 468, 805, 810, 824
Sau96I GGNCC 3 cut(s) 188, 625, 643
SchI GAGTC 2 cut(s) 501, 862
ScrFI CCNGG 1 cut(s) 396
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 147, 461
SinI GGWCC 3 cut(s) 188, 625, 643
SmiMI CAYNNNNRTG 2 cut(s) 27, 224
Sse9I AATT 4 cut(s) 248, 427, 575, 695
SsiI CCGC 1 cut(s) 33
SspI AATATT 1 cut(s) 769
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 316, 595, 671
TaqI TCGA 4 cut(s) 222, 259, 351, 813
TaqII GACCGA 1 cut(s) 833
TasI AATT 4 cut(s) 248, 427, 575, 695
Tru1I TTAA 4 cut(s) 309, 558, 579, 854
Tru9I TTAA 4 cut(s) 309, 558, 579, 854
TscAI CASTG 3 cut(s) 87, 470, 600
TspDTI ATGAA 5 cut(s) 41, 78, 370, 576, 690
TspRI CASTG 3 cut(s) 87, 470, 600
VpaK11BI GGWCC 3 cut(s) 188, 625, 643
XapI RAATTY 2 cut(s) 427, 695
XceI RCATGY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.