Rh2BG415800

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000342
Physical Location & Seq
Reverse (-)
58709825 .. 58713393
3569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG415800.1

Sequence Viewer

Length: 297 bp
ATGGTCCTCACAACCATGGGCAGCATACGGAGCAATGATCCCCTCAGCATTTGGGAATTTGTCGGACTAAAACTCCATGACATGGTTTTAGATGGTTTGATTGAAGAGAAAAAATTGGACACATTTAATATGCCATACTATGCGTCAACAGCGGATGAGGTGAAAGAGGTGATTGAGGCTGACGGAAGAATATCTCAAAGTTGGAAGCCAAATCAGCTCTCAAATCAACCCAGAAATCAAACAGCAATCCAAGAATCTCCCTCTCGACTCTTGCCTATCATGAAGCTAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

98

Amino Acids

11.12

Weight (kDa)

4.86

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 64 2.9e-14 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 82
AciI CCGC 1 cut(s) 152
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 3 cut(s) 217, 286, 293
AluI AGCT 3 cut(s) 217, 286, 293
AlwI GGATC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 21
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 172, 181
AvaII GGWCC 1 cut(s) 4
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 33
BccI CCATC 1 cut(s) 86
BfaI CTAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 82
Bsp143I GATC 1 cut(s) 37
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 279
BspPI GGATC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 3 cut(s) 30, 149, 214
BstV1I GCAGC 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 160
CciI TCATGA 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 132
CviAII CATG 4 cut(s) 16, 77, 82, 280
CviJI RGCY 5 cut(s) 179, 208, 217, 286, 293
CviKI_1 RGCY 5 cut(s) 179, 208, 217, 286, 293
DdeI CTNAG 1 cut(s) 44
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 4 cut(s) 19, 80, 85, 283
FaiI YATR 8 cut(s) 17, 26, 78, 83, 131, 136, 141, 281
FatI CATG 4 cut(s) 15, 76, 81, 279
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 1 cut(s) 287
GluI GCNGC 1 cut(s) 22
HgaI GACGC 1 cut(s) 132
Hin1II CATG 4 cut(s) 19, 80, 85, 283
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 254, 267
HphI GGTGA 2 cut(s) 172, 181
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 2 cut(s) 264, 280
Hpy8I GTNNAC 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 149, 214
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 4 cut(s) 19, 80, 85, 283
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 1 cut(s) 244
Lsp1109I GCAGC 1 cut(s) 33
MaeI CTAG 1 cut(s) 287
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 116, 198
MluCI AATT 2 cut(s) 56, 113
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 43, 182
MnlI CCTC 6 cut(s) 17, 53, 151, 160, 169, 271
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 30, 149, 214
NcoI CCATGG 1 cut(s) 15
NdeII GATC 1 cut(s) 37
NlaIII CATG 4 cut(s) 19, 80, 85, 283
PagI TCATGA 1 cut(s) 279
PfeI GAWTC 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 261
SetI ASST 5 cut(s) 162, 171, 219, 288, 295
SgeI CNNG 8 cut(s) 28, 89, 94, 243, 263, 276, 283, 292
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 56, 113
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 15
TaqI TCGA 1 cut(s) 265
TasI AATT 2 cut(s) 56, 113
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 296
TspGWI ACGGA 2 cut(s) 43, 198
Van91I CCANNNNNTGG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 56
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.