AT5G04370

carboxyl

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000342
Physical Location & Seq
Forward (+)
1231609 .. 1234147
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04370.2

Sequence Viewer

Length: 1191 bp
ATGGATTCAAGATTCACCGATTCCACAACTACCTTAAGATGTAATGGTAAGAGTGAAAATGAGAGGAAAAACGGCGATGAAGAAAGAATTAGTAAATACTCCTTTGTGAGTCCACTGTGTATGCGTGGAGGAGATGGATACAATAGTTACTCCAGCAATTCTCTTCTTCAGAGAAGAGTGTTATCAAAGGCTAAACCGGTATTGGTTAAGAACACAAAGGACCTGATGATAAACTTAAACTTTCCTACATACATTAAAGTAGCTGATTTGGGCTGTTCATCAGGACAGAATACGTTCTTGGCAATGTCTGAAATTATCAATACAATCAATGTGTTTTGTCAACAGAGGAACCAAAACCCACCAGAAATAGATTGTTGTCTAAATGATCTCCCTAGTAACGATTTTAACACAACGTTCAAATTCATACAATTCTTCAATGGGATGAACATCACGAGCAAAGAATCATACTTTGTCTATGGAGTCCCCGGTTCTTTCTACTCGAGGCTCTTCCCTCGGAGGAGTCTTCATTTCGTACATTCCTCTTATGGTCTCCATTGGCTCTCTAAGGTTCCTGAAGGGCTTGAGAAGAATAAGATGAGTGTGTACATCACAAATTCAAGTCCTCTAAGCACATACAAGGCTTACTTAAATCAATTCCAAAGAGATTTTGCGACATTCCTTAAACTGCGTTCTGAAGAGATGGTTTCTAATGGACGCATGGTTCTCACTTTCATTGGTCGAAACACTATTGATAATCCATTGCATAGAGATTGTTGTCACTTTTGGACATTATTATCCAAATCTCTTCGTGACCTAGTCGCCGAGGGCCTTGTGAGTGCATCAAAGGTAGATTCATTCTACTTACCGTTTTATGACCCCAACGAAAAAGAAATAAAGGAGATGGTACAGAAAGAAGGTTCCTTTGAAATCAGAGACTTGGAGACACATGGATATGATCTTGGCCATTGTAACCAAGACGAGTCAAAGAGAAGTAAATCAGGGCAAAATGAAGCTAATTACATCAGAGCGGTGAGTGAACCACTGCTTGCGGCTCACTTTGGAGATGCCATTATCAACATATTGTTTAACAAGTTTGCATGTCATGTGTCTCAACATGTTAGTTGCAGGAACAAAACGACCGTCAGCATAGTCGTTTCACTGACTAAGAAAAAAACTTTCCTCATGTCCTAA

Protein Analysis

396

Amino Acids

45.18

Weight (kDa)

8.82

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 90 - 408 2.5e-124 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1028
AciI CCGC 2 cut(s) 1028, 1049
AclI AACGTT 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 961
AcsI RAATTY 2 cut(s) 419, 613
AcuI CTGAAG 3 cut(s) 152, 594, 714
AfaI GTAC 3 cut(s) 534, 605, 906
AflII CTTAAG 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 1114
AgeI ACCGGT 1 cut(s) 196
AgsI TTSAA 5 cut(s) 9, 418, 436, 618, 926
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AloI GAACNNNNNNTCC 2 cut(s) 705, 737
AluBI AGCT 2 cut(s) 263, 1013
AluI AGCT 2 cut(s) 263, 1013
Alw26I GTCTC 4 cut(s) 554, 927, 935, 1113
Ama87I CYCGRG 1 cut(s) 499
AoxI GGCC 2 cut(s) 826, 961
ApoI RAATTY 2 cut(s) 419, 613
ArsI GACNNNNNNTTYG 2 cut(s) 1125, 1157
AsiGI ACCGGT 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 220, 826
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 2 cut(s) 7, 1042
AvaI CYCGRG 1 cut(s) 499
AvaII GGWCC 1 cut(s) 220
BaeI ACNNNNGTAYC 2 cut(s) 130, 163
BalI TGGCCA 1 cut(s) 963
BauI CACGAG 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 515
BccI CCATC 3 cut(s) 128, 694, 895
BceAI ACGGC 1 cut(s) 88
BciVI GTATCC 1 cut(s) 131
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 4 cut(s) 554, 927, 935, 1113
BfaI CTAG 2 cut(s) 393, 815
BfrI CTTAAG 1 cut(s) 34
BfuI GTATCC 1 cut(s) 131
BisI GCNGC 1 cut(s) 1050
BlsI GCNGC 1 cut(s) 1051
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 499
BmgT120I GGNCC 2 cut(s) 220, 826
BmiI GGNNCC 3 cut(s) 350, 570, 919
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 2 cut(s) 848, 1054
BpiI GAAGAC 1 cut(s) 515
BpmI CTGGAG 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 486
BsaBI GATNNNNATC 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 3 cut(s) 484, 512, 822
BsaWI WCCGGW 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 196
Bse3DI GCAATG 2 cut(s) 309, 758
Bse8I GATNNNNATC 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 484, 512, 822
BseGI GGATG 1 cut(s) 447
BseJI GATNNNNATC 1 cut(s) 446
BseMI GCAATG 2 cut(s) 309, 758
BseRI GAGGAG 2 cut(s) 144, 532
Bsh1285I CGRYCG 1 cut(s) 1140
BshFI GGCC 2 cut(s) 828, 963
BshTI ACCGGT 1 cut(s) 196
BsiEI CGRYCG 1 cut(s) 1140
BsiHKCI CYCGRG 1 cut(s) 499
BsiSI CCGG 2 cut(s) 197, 486
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 4 cut(s) 554, 927, 935, 1113
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 2 cut(s) 828, 963
Bso31I GGTCTC 1 cut(s) 554
BsoBI CYCGRG 1 cut(s) 499
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 2 cut(s) 385, 955
BspACI CCGC 2 cut(s) 1028, 1049
BspANI GGCC 2 cut(s) 828, 963
BspLI GGNNCC 3 cut(s) 350, 570, 919
BspQI GCTCTTC 1 cut(s) 512
BspTI CTTAAG 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 554
BsrBI CCGCTC 1 cut(s) 1028
BsrDI GCAATG 2 cut(s) 309, 758
BsrFI RCCGGY 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 603
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 3 cut(s) 484, 512, 822
BssMI GATC 2 cut(s) 385, 955
BssSI CACGAG 1 cut(s) 451
Bst2BI CACGAG 1 cut(s) 451
Bst4CI ACNGT 3 cut(s) 117, 867, 1141
Bst6I CTCTTC 5 cut(s) 168, 169, 512, 690, 810
BstAFI CTTAAG 1 cut(s) 34
BstAUI TGTACA 1 cut(s) 603
BstC8I GCNNGC 1 cut(s) 1047
BstDEI CTNAG 3 cut(s) 564, 626, 1164
BstF5I GGATG 1 cut(s) 447
BstKTI GATC 2 cut(s) 388, 958
BstMAI GTCTC 4 cut(s) 554, 927, 935, 1113
BstMBI GATC 2 cut(s) 385, 955
BstMCI CGRYCG 1 cut(s) 1140
BstNSI RCATGY 2 cut(s) 1101, 1118
BstSCI CCNGG 1 cut(s) 484
BstV2I GAAGAC 1 cut(s) 515
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 2 cut(s) 828, 963
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 447
BtsI GCAGTG 1 cut(s) 1040
BtsIMutI CAGTG 3 cut(s) 113, 1040, 1157
Cac8I GCNNGC 1 cut(s) 1047
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 220, 826
CseI GACGC 1 cut(s) 723
Csp6I GTAC 3 cut(s) 533, 604, 905
CspAI ACCGGT 1 cut(s) 196
CviAII CATG 6 cut(s) 718, 947, 1098, 1103, 1115, 1183
CviQI GTAC 3 cut(s) 533, 604, 905
DdeI CTNAG 3 cut(s) 564, 626, 1164
DpnI GATC 2 cut(s) 387, 957
DpnII GATC 2 cut(s) 385, 955
EaeI YGGCCR 1 cut(s) 961
Eam1104I CTCTTC 5 cut(s) 168, 169, 512, 690, 810
EarI CTCTTC 5 cut(s) 168, 169, 512, 690, 810
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 3 cut(s) 152, 594, 714
Eco88I CYCGRG 1 cut(s) 499
EcoO109I RGGNCCY 2 cut(s) 220, 826
FaeI CATG 6 cut(s) 721, 950, 1101, 1106, 1118, 1186
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FaqI GGGAC 1 cut(s) 467
FatI CATG 6 cut(s) 717, 946, 1097, 1102, 1114, 1182
Fnu4HI GCNGC 1 cut(s) 1050
FokI GGATG 1 cut(s) 454
Fsp4HI GCNGC 1 cut(s) 1050
FspBI CTAG 2 cut(s) 393, 815
GluI GCNGC 1 cut(s) 1050
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 2 cut(s) 828, 963
HapII CCGG 2 cut(s) 197, 486
HgaI GACGC 1 cut(s) 723
Hin1II CATG 6 cut(s) 721, 950, 1101, 1106, 1118, 1186
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HinfI GANTC 9 cut(s) 5, 12, 20, 109, 461, 480, 520, 851, 980
HpaII CCGG 2 cut(s) 197, 486
HphI GGTGA 2 cut(s) 7, 1042
Hpy166II GTNNAC 4 cut(s) 113, 341, 604, 1037
Hpy188I TCNGA 6 cut(s) 171, 310, 516, 694, 932, 1025
Hpy188III TCNNGA 5 cut(s) 9, 282, 451, 572, 809
Hpy8I GTNNAC 4 cut(s) 113, 341, 604, 1037
HpyAV CCTTC 2 cut(s) 569, 908
HpyCH4III ACNGT 3 cut(s) 117, 867, 1141
HpyCH4IV ACGT 2 cut(s) 293, 413
HpyCH4V TGCA 4 cut(s) 763, 839, 1097, 1125
HpyF3I CTNAG 3 cut(s) 564, 626, 1164
HpySE526I ACGT 2 cut(s) 293, 413
Hsp92II CATG 6 cut(s) 721, 950, 1101, 1106, 1118, 1186
Kzo9I GATC 2 cut(s) 385, 955
LguI GCTCTTC 1 cut(s) 512
LpnPI CCDG 9 cut(s) 166, 210, 236, 267, 375, 499, 585, 984, 1111
LweI GCATC 2 cut(s) 848, 1054
MaeI CTAG 2 cut(s) 393, 815
MaeII ACGT 2 cut(s) 293, 413
MaeIII GTNAC 5 cut(s) 146, 395, 776, 809, 968
MalI GATC 2 cut(s) 387, 957
MbiI CCGCTC 1 cut(s) 1028
MboI GATC 2 cut(s) 385, 955
MlsI TGGCCA 1 cut(s) 963
MluCI AATT 8 cut(s) 87, 157, 312, 419, 428, 613, 653, 1015
MluNI TGGCCA 1 cut(s) 963
MlyI GAGTC 4 cut(s) 118, 489, 529, 989
Mox20I TGGCCA 1 cut(s) 963
MroXI GAANNNNTTC 1 cut(s) 293
MscI TGGCCA 1 cut(s) 963
MseI TTAA 8 cut(s) 35, 207, 236, 255, 405, 647, 681, 1086
MslI CAYNNNNRTG 1 cut(s) 951
Msp20I TGGCCA 1 cut(s) 963
MspCI CTTAAG 1 cut(s) 34
MspI CCGG 2 cut(s) 197, 486
MspR9I CCNGG 1 cut(s) 486
NciI CCSGG 1 cut(s) 486
NdeII GATC 2 cut(s) 385, 955
NlaIII CATG 6 cut(s) 721, 950, 1101, 1106, 1118, 1186
NlaIV GGNNCC 3 cut(s) 350, 570, 919
NmeAIII GCCGAG 1 cut(s) 847
NmuCI GTSAC 2 cut(s) 776, 809
NspI RCATGY 2 cut(s) 1101, 1118
PaeR7I CTCGAG 1 cut(s) 499
PciI ACATGT 1 cut(s) 1114
PciSI GCTCTTC 1 cut(s) 512
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 5 cut(s) 5, 12, 20, 461, 851
PflFI GACNNNGTC 1 cut(s) 815
PinAI ACCGGT 1 cut(s) 196
PkrI GCNGC 1 cut(s) 1051
PleI GAGTC 4 cut(s) 117, 488, 528, 988
PpsI GAGTC 4 cut(s) 117, 488, 528, 988
PpuMI RGGWCCY 1 cut(s) 220
PscI ACATGT 1 cut(s) 1114
Psp1406I AACGTT 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 350, 570, 919
PspPI GGNCC 2 cut(s) 220, 826
PspPPI RGGWCCY 1 cut(s) 220
PspXI VCTCGAGB 1 cut(s) 499
PsyI GACNNNGTC 1 cut(s) 815
RsaI GTAC 3 cut(s) 534, 605, 906
RsaNI GTAC 3 cut(s) 533, 604, 905
RseI CAYNNNNRTG 1 cut(s) 951
SapI GCTCTTC 1 cut(s) 512
SaqAI TTAA 8 cut(s) 35, 207, 236, 255, 405, 647, 681, 1086
SatI GCNGC 1 cut(s) 1050
Sau3AI GATC 2 cut(s) 385, 955
Sau96I GGNCC 2 cut(s) 220, 826
SchI GAGTC 4 cut(s) 118, 489, 529, 989
ScrFI CCNGG 1 cut(s) 486
SfaNI GCATC 2 cut(s) 848, 1054
Sfr274I CTCGAG 1 cut(s) 499
SinI GGWCC 1 cut(s) 220
SlaI CTCGAG 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 951
SmlI CTYRAG 3 cut(s) 34, 499, 581
SmoI CTYRAG 3 cut(s) 34, 499, 581
Sse9I AATT 8 cut(s) 87, 157, 312, 419, 428, 613, 653, 1015
SsiI CCGC 2 cut(s) 1028, 1049
SspMI CTAG 2 cut(s) 393, 815
StyD4I CCNGG 1 cut(s) 484
TaaI ACNGT 3 cut(s) 117, 867, 1141
TaiI ACGT 2 cut(s) 296, 416
TaqI TCGA 2 cut(s) 500, 739
TasI AATT 8 cut(s) 87, 157, 312, 419, 428, 613, 653, 1015
TatI WGTACW 1 cut(s) 603
TauI GCSGC 1 cut(s) 1052
TfiI GAWTC 5 cut(s) 5, 12, 20, 461, 851
Tru1I TTAA 8 cut(s) 35, 207, 236, 255, 405, 647, 681, 1086
Tru9I TTAA 8 cut(s) 35, 207, 236, 255, 405, 647, 681, 1086
TscAI CASTG 3 cut(s) 120, 1047, 1164
TseFI GTSAC 2 cut(s) 776, 809
Tsp45I GTSAC 2 cut(s) 776, 809
TspDTI ATGAA 8 cut(s) 93, 267, 412, 458, 515, 721, 843, 1023
TspRI CASTG 3 cut(s) 120, 1047, 1164
Tth111I GACNNNGTC 1 cut(s) 815
Vha464I CTTAAG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 2 cut(s) 419, 613
XceI RCATGY 2 cut(s) 1101, 1118
XhoI CTCGAG 1 cut(s) 499
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 2 cut(s) 393, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.