AT2G14060

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000342
Physical Location & Seq
Reverse (-)
5914414 .. 5916436
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G14060.2

Sequence Viewer

Length: 1119 bp
ATGTCTCCCTCAAGGGACTCTTTGGTGGACGCTCTTAAAATGAAAGGAGGAACAGGAGACCATAGTTATGCTACTAATTCACATTATCAGAGAAGTGTTTTCTATGAGATACAACCTTTGGTCATAGAGAACGTAAGAGAAATGCTACTGAAAAATGGGTTTCCTGGTTGCATCAAAGTGGCAGACTTGGGTTGTTCTACTGGACAAAACACGGTGTTGGCCATGTCCGCAATCGCCTACACGATCATGGAGTCATACCAACAAATGAGTAAAAACCCACCAGAAATCGATTGTTATTTGAACGACCTTCCAGAGAACGATTTCAATACCACCTTCAAGTTGTTTCATTCTTTCCAAGAGAAGCTGAAACCGGAGGTTAAAGGAAAGTGGTTTGTCTCGGGAGTCCCGGGTTCTTTTTACTCAAGGCTATTCCCAAGAAAGTCTCTCCATTTTGTTCATTCAGCTTTTAGTATCCATTGGCTTTCTAGAATTCCAGATGGCCTTGAGAGCAACACTAAAAGCATTCATATTAAATATCCATACCCTTCAAATGTCTACAAGAGTTATTTAAATCAGTTCAAGATAGATTTTTCGTTGTTCTTAAAAATGCGTTCAGAAGAAGTAGTGCATAATGGACATATGGTTCTAACGTTCGTGGGAAGAAAGGTTTCCGACACTTTATCCAAAGATTGTTTCCAAGTTTGGTCGTTGTTATCCGATTGCCTCCTCGATCTAGCCTCCGAGGGGTTTGTGAACGATTCAATGGTAAAATCATTTAACATGCCATTCTACAATCCAAACGAAGAAGAGGTAAGAGAATTTATCTTAAAGGAAGGTTCCTTCGAGATCACCAAGATCGAGAAATTCGACCATGTTGTCCCATACAAAATTGACCGTGAGGAAGAAGATGAGGAGCAATCACTTCAGTTGGAAGCTGGTATAAAGCATGCAAGCTGGGCAAGATGCATCACCGAACCATTGCTCGTTGCTCATTTCGGAGATGCAATTATAGAACCGGTGTTCAACAAGTATGCACACTATATGGCCAAGTATCTAAGTGTCTCAAACCATCGCCGTAATATGACACTCGTCATCGTAGTTTCGTTGACTAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

372

Amino Acids

42.77

Weight (kDa)

6.4

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 44 - 248 2.2e-80 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 875
AccI GTMKAC 1 cut(s) 555
AciI CCGC 1 cut(s) 228
AclI AACGTT 1 cut(s) 650
AcoI YGGCCR 2 cut(s) 219, 1044
AcsI RAATTY 3 cut(s) 489, 818, 863
AcuI CTGAAG 1 cut(s) 908
AfiI CCNNNNNNNGG 1 cut(s) 744
AgeI ACCGGT 1 cut(s) 1015
AgsI TTSAA 7 cut(s) 301, 325, 337, 549, 580, 762, 1024
AjnI CCWGG 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
AloI GAACNNNNNNTCC 2 cut(s) 627, 659
AluBI AGCT 4 cut(s) 364, 464, 935, 954
AluI AGCT 4 cut(s) 364, 464, 935, 954
Alw26I GTCTC 5 cut(s) 9, 51, 400, 447, 1066
Ama87I CYCGRG 2 cut(s) 397, 406
AoxI GGCC 3 cut(s) 219, 499, 1044
ApoI RAATTY 3 cut(s) 489, 818, 863
AsiGI ACCGGT 1 cut(s) 1015
Asp700I GAANNNNTTC 2 cut(s) 320, 667
AsuC2I CCSGG 2 cut(s) 407, 408
AsuHPI GGTGA 2 cut(s) 841, 961
AvaI CYCGRG 2 cut(s) 397, 406
BalI TGGCCA 2 cut(s) 221, 1046
BccI CCATC 2 cut(s) 491, 1077
BceAI ACGGC 1 cut(s) 1059
BciT130I CCWGG 1 cut(s) 165
BciVI GTATCC 1 cut(s) 482
BcnI CCSGG 2 cut(s) 407, 408
BcoDI GTCTC 5 cut(s) 9, 51, 400, 447, 1066
BfaI CTAG 3 cut(s) 486, 734, 1110
BfuI GTATCC 1 cut(s) 482
Bme1390I CCNGG 3 cut(s) 165, 407, 408
BmeT110I CYCGRG 2 cut(s) 397, 406
BmiI GGNNCC 1 cut(s) 838
BmrFI CCNGG 3 cut(s) 165, 407, 408
BmsI GCATC 4 cut(s) 180, 953, 975, 991
BoxI GACNNNNGTC 1 cut(s) 1088
BpuEI CTTGAG 2 cut(s) 406, 524
BpuMI CCSGG 2 cut(s) 407, 408
Bsa29I ATCGAT 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 406, 741
BsaWI WCCGGW 2 cut(s) 370, 1015
Bsc4I CCNNNNNNNGG 1 cut(s) 744
Bse118I RCCGGY 1 cut(s) 1015
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 977
BseBI CCWGG 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 406, 741
BseLI CCNNNNNNNGG 1 cut(s) 744
BseMI GCAATG 1 cut(s) 977
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 2 cut(s) 716, 926
BseYI CCCAGC 1 cut(s) 954
BshFI GGCC 3 cut(s) 221, 501, 1046
BshTI ACCGGT 1 cut(s) 1015
BshVI ATCGAT 1 cut(s) 288
BsiHKCI CYCGRG 2 cut(s) 397, 406
BsiSI CCGG 3 cut(s) 371, 407, 1016
BslFI GGGAC 3 cut(s) 29, 389, 863
BslI CCNNNNNNNGG 1 cut(s) 744
BsmAI GTCTC 5 cut(s) 9, 51, 400, 447, 1066
BsmFI GGGAC 3 cut(s) 29, 389, 863
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 3 cut(s) 221, 501, 1046
Bso31I GGTCTC 1 cut(s) 51
BsoBI CYCGRG 2 cut(s) 397, 406
Bsp143I GATC 4 cut(s) 243, 730, 846, 855
BspACI CCGC 1 cut(s) 228
BspANI GGCC 3 cut(s) 221, 501, 1046
BspDI ATCGAT 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 838
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 977
BsrFI RCCGGY 1 cut(s) 1015
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 1015
BssECI CCNNGG 2 cut(s) 406, 741
BssMI GATC 4 cut(s) 243, 730, 846, 855
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 214, 896
Bst6I CTCTTC 1 cut(s) 801
BstC8I GCNNGC 2 cut(s) 948, 952
BstDEI CTNAG 1 cut(s) 1055
BstKTI GATC 4 cut(s) 246, 733, 849, 858
BstMAI GTCTC 5 cut(s) 9, 51, 400, 447, 1066
BstMBI GATC 4 cut(s) 243, 730, 846, 855
BstMWI GCNNNNNNNGC 3 cut(s) 227, 507, 956
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 2 cut(s) 784, 950
BstPAI GACNNNNGTC 1 cut(s) 1088
BstSCI CCNGG 3 cut(s) 163, 405, 406
Bsu15I ATCGAT 1 cut(s) 288
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 3 cut(s) 221, 501, 1046
BsuTUI ATCGAT 1 cut(s) 288
BtgZI GCGATG 1 cut(s) 1055
Cac8I GCNNGC 2 cut(s) 948, 952
Cfr10I RCCGGY 1 cut(s) 1015
Cfr9I CCCGGG 1 cut(s) 406
ClaI ATCGAT 1 cut(s) 288
CseI GACGC 1 cut(s) 38
CspAI ACCGGT 1 cut(s) 1015
CviAII CATG 5 cut(s) 223, 247, 781, 872, 947
DdeI CTNAG 1 cut(s) 1055
DpnI GATC 4 cut(s) 245, 732, 848, 857
DpnII GATC 4 cut(s) 243, 730, 846, 855
DraI TTTAAA 1 cut(s) 570
DrdI GACNNNNNNGTC 1 cut(s) 875
DseDI GACNNNNNNGTC 1 cut(s) 875
EaeI YGGCCR 2 cut(s) 219, 1044
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
Eco31I GGTCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 908
Eco88I CYCGRG 2 cut(s) 397, 406
EcoRI GAATTC 1 cut(s) 489
EcoRII CCWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 968
FaeI CATG 5 cut(s) 226, 250, 784, 875, 950
FalI AAGNNNNNCTT 1 cut(s) 36
FaqI GGGAC 3 cut(s) 29, 389, 863
FatI CATG 5 cut(s) 222, 246, 780, 871, 946
FauNDI CATATG 1 cut(s) 639
FblI GTMKAC 1 cut(s) 555
FspBI CTAG 3 cut(s) 486, 734, 1110
GsaI CCCAGC 1 cut(s) 958
HaeIII GGCC 3 cut(s) 221, 501, 1046
HapII CCGG 3 cut(s) 371, 407, 1016
HgaI GACGC 1 cut(s) 38
Hin1II CATG 5 cut(s) 226, 250, 784, 875, 950
HincII GTYRAC 1 cut(s) 1107
HindII GTYRAC 1 cut(s) 1107
HinfI GANTC 4 cut(s) 17, 251, 402, 758
HpaII CCGG 3 cut(s) 371, 407, 1016
HphI GGTGA 2 cut(s) 841, 961
Hpy166II GTNNAC 4 cut(s) 28, 556, 754, 1107
Hpy188I TCNGA 6 cut(s) 90, 616, 673, 718, 742, 998
Hpy188III TCNNGA 7 cut(s) 311, 399, 486, 494, 580, 844, 859
Hpy8I GTNNAC 4 cut(s) 28, 556, 754, 1107
HpyAV CCTTC 5 cut(s) 317, 343, 555, 827, 850
HpyCH4III ACNGT 2 cut(s) 214, 896
HpyCH4IV ACGT 2 cut(s) 132, 650
HpyCH4V TGCA 6 cut(s) 171, 628, 950, 966, 1004, 1034
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 507, 956
HpyF3I CTNAG 1 cut(s) 1055
HpySE526I ACGT 2 cut(s) 132, 650
Hsp92II CATG 5 cut(s) 226, 250, 784, 875, 950
Kzo9I GATC 4 cut(s) 243, 730, 846, 855
LmnI GCTCC 1 cut(s) 913
LweI GCATC 4 cut(s) 180, 953, 975, 991
MaeI CTAG 3 cut(s) 486, 734, 1110
MaeII ACGT 2 cut(s) 132, 650
MalI GATC 4 cut(s) 245, 732, 848, 857
MboI GATC 4 cut(s) 243, 730, 846, 855
MboII GAAGA 6 cut(s) 629, 672, 815, 818, 914, 917
MlsI TGGCCA 2 cut(s) 221, 1046
MluCI AATT 6 cut(s) 76, 489, 818, 863, 888, 1005
MluNI TGGCCA 2 cut(s) 221, 1046
MlyI GAGTC 3 cut(s) 11, 260, 411
MmeI TCCRAC 2 cut(s) 696, 909
Mox20I TGGCCA 2 cut(s) 221, 1046
Mph1103I ATGCAT 1 cut(s) 968
MroXI GAANNNNTTC 2 cut(s) 320, 667
MscI TGGCCA 2 cut(s) 221, 1046
MseI TTAA 7 cut(s) 36, 378, 531, 569, 602, 777, 827
MslI CAYNNNNRTG 3 cut(s) 66, 176, 245
Msp20I TGGCCA 2 cut(s) 221, 1046
MspI CCGG 3 cut(s) 371, 407, 1016
MspR9I CCNGG 3 cut(s) 165, 407, 408
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 227, 507, 956
NciI CCSGG 2 cut(s) 407, 408
NdeI CATATG 1 cut(s) 639
NdeII GATC 4 cut(s) 243, 730, 846, 855
NlaIII CATG 5 cut(s) 226, 250, 784, 875, 950
NlaIV GGNNCC 1 cut(s) 838
NsiI ATGCAT 1 cut(s) 968
NspI RCATGY 2 cut(s) 784, 950
PaeI GCATGC 1 cut(s) 950
PcsI WCGNNNNNNNCGW 1 cut(s) 864
PctI GAATGC 1 cut(s) 522
PdmI GAANNNNTTC 2 cut(s) 320, 667
PfeI GAWTC 1 cut(s) 758
PinAI ACCGGT 1 cut(s) 1015
PleI GAGTC 3 cut(s) 11, 259, 410
PpsI GAGTC 3 cut(s) 11, 259, 410
PshAI GACNNNNGTC 1 cut(s) 1088
Psp1406I AACGTT 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 954
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 838
RseI CAYNNNNRTG 3 cut(s) 66, 176, 245
SaqAI TTAA 7 cut(s) 36, 378, 531, 569, 602, 777, 827
Sau3AI GATC 4 cut(s) 243, 730, 846, 855
SchI GAGTC 3 cut(s) 11, 260, 411
ScrFI CCNGG 3 cut(s) 165, 407, 408
SfaNI GCATC 4 cut(s) 180, 953, 975, 991
SmaI CCCGGG 1 cut(s) 408
SmiI ATTTAAAT 1 cut(s) 570
SmiMI CAYNNNNRTG 3 cut(s) 66, 176, 245
SmlI CTYRAG 3 cut(s) 10, 421, 503
SmoI CTYRAG 3 cut(s) 10, 421, 503
SphI GCATGC 1 cut(s) 950
Sse9I AATT 6 cut(s) 76, 489, 818, 863, 888, 1005
SsiI CCGC 1 cut(s) 228
SspMI CTAG 3 cut(s) 486, 734, 1110
StyD4I CCNGG 3 cut(s) 163, 405, 406
SwaI ATTTAAAT 1 cut(s) 570
TaaI ACNGT 2 cut(s) 214, 896
TaiI ACGT 2 cut(s) 135, 653
TaqI TCGA 5 cut(s) 288, 729, 843, 858, 867
TasI AATT 6 cut(s) 76, 489, 818, 863, 888, 1005
TfiI GAWTC 1 cut(s) 758
Tru1I TTAA 7 cut(s) 36, 378, 531, 569, 602, 777, 827
Tru9I TTAA 7 cut(s) 36, 378, 531, 569, 602, 777, 827
TspDTI ATGAA 4 cut(s) 56, 335, 446, 515
TspMI CCCGGG 1 cut(s) 406
XapI RAATTY 3 cut(s) 489, 818, 863
XbaI TCTAGA 1 cut(s) 485
XceI RCATGY 2 cut(s) 784, 950
XmaI CCCGGG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 2 cut(s) 320, 667
XspI CTAG 3 cut(s) 486, 734, 1110
Zsp2I ATGCAT 1 cut(s) 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.