Rmu_sc0011954.1_g000001

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011954.1
OG0000342
Physical Location & Seq
Forward (+)
2649 .. 4093
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011954.1_g000001.1.cds

Sequence Viewer

Length: 1017 bp
atggaggtagagcaagttcttcacatgaatggcggagatggcaaattaagctacgcaaaccactcacttcttcaaagagctgtgatttcgacggtgaagcctatagtggatgcaagcatagaggagctctgcagcactctcttcccggagtgcctgaaaatagcggacttgggatgctcttcgggacccaataccctactggtagtatcaaacatcatagccaacatccagaacacgtcactgcctggcttctataacaagctcgatgaagaacatgagaacaagtcgggtccttgtttcattgcagcaatgcctggttccttttatgggaggctctttcctgacaactctctccactttgttcattcttcttgtgctctcatgtggatctctgaggtcccaaaaggtttggtgacgaaaggaggagagggactgaacaaggggaacatatatatagccaagacaagctcacccgctgtgtttaatgaatactttgagcaattcaaaagggacttcagagtctttctgaggtctcgggcacaagagctagtcccgggaggtagtatggtccacacaacaatgggcagcataaatagcaaagatcccctctgcatttgggaatttgtcggattaaaactccatgacatggttttagatggtttgattgaagaggaaaaattggacacattcaatttgccatactacgcaccaacaacggatgaggtgaaagaggttatcgaggctgaaggttcttttaccctgcaaaaccttgaagttttcagaaatgactgggacttttatataaaacaagcaaactgtggctttgacaagaatgcgagggcagccatactgtccactgacataagagctgtgggagagcctactctggccagccaattcagagaggaagccatggacgatttgtttcgcaggtttgaagaagatgttcttgatcacatggaaaaggagaagtgccagttcatcaacctggttatctcgttaactaagaagcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

338

Amino Acids

37.94

Weight (kDa)

5.03

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 921
AccB7I CCANNNNNTGG 1 cut(s) 646
AciI CCGC 3 cut(s) 33, 164, 474
AclWI GGATC 2 cut(s) 395, 596
AcoI YGGCCR 1 cut(s) 888
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 2 cut(s) 499, 765
AfiI CCNNNNNNNGG 2 cut(s) 327, 646
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 6 cut(s) 74, 505, 668, 691, 773, 938
AjiI CACGTC 1 cut(s) 237
AjnI CCWGG 3 cut(s) 244, 313, 987
AluBI AGCT 7 cut(s) 51, 80, 127, 262, 468, 547, 869
AluI AGCT 7 cut(s) 51, 80, 127, 262, 468, 547, 869
Alw21I GWGCWC 2 cut(s) 129, 379
Alw26I GTCTC 1 cut(s) 537
AlwI GGATC 2 cut(s) 395, 596
Ama87I CYCGRG 2 cut(s) 534, 553
AoxI GGCC 1 cut(s) 888
ApeKI GCWGC 4 cut(s) 132, 305, 585, 842
ApoI RAATTY 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 945
AspS9I GGNCC 4 cut(s) 185, 290, 397, 568
AsuC2I CCSGG 3 cut(s) 146, 554, 555
AsuHPI GGTGA 4 cut(s) 106, 424, 462, 736
AvaI CYCGRG 2 cut(s) 534, 553
AvaII GGWCC 4 cut(s) 185, 290, 397, 568
BaeGI GKGCMC 1 cut(s) 541
BalI TGGCCA 1 cut(s) 890
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 129, 379
BbvI GCAGC 4 cut(s) 144, 317, 597, 854
BccI CCATC 2 cut(s) 32, 650
BciT130I CCWGG 3 cut(s) 246, 315, 989
BclI TGATCA 1 cut(s) 952
BcnI CCSGG 3 cut(s) 146, 554, 555
BcoDI GTCTC 1 cut(s) 537
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 2 cut(s) 102, 130
BfuAI ACCTGC 1 cut(s) 921
BisI GCNGC 4 cut(s) 133, 306, 586, 843
BlsI GCNGC 4 cut(s) 134, 307, 587, 844
Bme1390I CCNGG 6 cut(s) 146, 246, 315, 554, 555, 989
Bme18I GGWCC 4 cut(s) 185, 290, 397, 568
BmeT110I CYCGRG 2 cut(s) 534, 553
BmgBI CACGTC 1 cut(s) 237
BmgT120I GGNCC 4 cut(s) 185, 290, 397, 568
BmiI GGNNCC 5 cut(s) 186, 187, 291, 319, 399
BmrFI CCNGG 6 cut(s) 146, 246, 315, 554, 555, 989
BmrI ACTGGG 1 cut(s) 799
BmsI GCATC 2 cut(s) 100, 164
BmuI ACTGGG 1 cut(s) 799
BpuMI CCSGG 3 cut(s) 146, 554, 555
BsaI GGTCTC 1 cut(s) 537
BsaJI CCNNGG 2 cut(s) 553, 912
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 646
Bse1I ACTGG 3 cut(s) 204, 794, 976
Bse3DI GCAATG 2 cut(s) 300, 315
BseBI CCWGG 3 cut(s) 246, 315, 989
BseDI CCNNGG 2 cut(s) 553, 912
BseGI GGATG 4 cut(s) 115, 179, 225, 724
BseLI CCNNNNNNNGG 2 cut(s) 327, 646
BseMI GCAATG 2 cut(s) 300, 315
BseMII CTCAG 2 cut(s) 384, 518
BseNI ACTGG 3 cut(s) 204, 794, 976
BseRI GAGGAG 2 cut(s) 137, 438
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 4 cut(s) 144, 317, 597, 854
BshFI GGCC 1 cut(s) 890
BsiHKAI GWGCWC 2 cut(s) 129, 379
BsiHKCI CYCGRG 2 cut(s) 534, 553
BsiSI CCGG 2 cut(s) 146, 554
BslFI GGGAC 6 cut(s) 198, 383, 444, 524, 536, 806
BslI CCNNNNNNNGG 2 cut(s) 327, 646
BsmAI GTCTC 1 cut(s) 537
BsmFI GGGAC 6 cut(s) 198, 383, 444, 524, 536, 806
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 1 cut(s) 890
Bso31I GGTCTC 1 cut(s) 537
BsoBI CYCGRG 2 cut(s) 534, 553
Bsp1286I GDGCHC 3 cut(s) 129, 379, 541
Bsp143I GATC 3 cut(s) 387, 601, 952
Bsp19I CCATGG 1 cut(s) 912
BspACI CCGC 3 cut(s) 33, 164, 474
BspANI GGCC 1 cut(s) 890
BspCNI CTCAG 2 cut(s) 385, 519
BspLI GGNNCC 5 cut(s) 186, 187, 291, 319, 399
BspMAI CTGCAG 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 921
BspPI GGATC 2 cut(s) 395, 596
BspQI GCTCTTC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 537
BsrDI GCAATG 2 cut(s) 300, 315
BsrI ACTGG 3 cut(s) 204, 794, 976
BssECI CCNNGG 2 cut(s) 553, 912
BssMI GATC 3 cut(s) 387, 601, 952
BssT1I CCWWGG 1 cut(s) 912
Bst2UI CCWGG 3 cut(s) 246, 315, 989
Bst4CI ACNGT 3 cut(s) 94, 818, 852
Bst6I CTCTTC 3 cut(s) 146, 184, 663
BstC8I GCNNGC 2 cut(s) 115, 892
BstDEI CTNAG 3 cut(s) 393, 527, 1005
BstDSI CCRYGG 1 cut(s) 912
BstF5I GGATG 4 cut(s) 115, 179, 225, 724
BstKTI GATC 3 cut(s) 390, 604, 955
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 3 cut(s) 387, 601, 952
BstMWI GCNNNNNNNGC 4 cut(s) 39, 48, 594, 842
BstNI CCWGG 3 cut(s) 246, 315, 989
BstSCI CCNGG 6 cut(s) 144, 244, 313, 552, 553, 987
BstSFI CTRYAG 2 cut(s) 102, 130
BstSLI GKGCMC 1 cut(s) 541
BstV1I GCAGC 4 cut(s) 144, 317, 597, 854
BstX2I RGATCY 2 cut(s) 387, 601
BstYI RGATCY 2 cut(s) 387, 601
BsuRI GGCC 1 cut(s) 890
BtgI CCRYGG 1 cut(s) 912
BtrI CACGTC 1 cut(s) 237
BtsCI GGATG 4 cut(s) 115, 179, 225, 724
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 2 cut(s) 239, 855
BveI ACCTGC 1 cut(s) 921
Cac8I GCNNGC 2 cut(s) 115, 892
Cfr13I GGNCC 4 cut(s) 185, 290, 397, 568
Cfr9I CCCGGG 1 cut(s) 553
CsiI ACCWGGT 1 cut(s) 987
CviAII CATG 7 cut(s) 25, 275, 382, 641, 646, 913, 958
DdeI CTNAG 3 cut(s) 393, 527, 1005
DpnI GATC 3 cut(s) 389, 603, 954
DpnII GATC 3 cut(s) 387, 601, 952
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
EaeI YGGCCR 1 cut(s) 888
Eam1104I CTCTTC 3 cut(s) 146, 184, 663
EarI CTCTTC 3 cut(s) 146, 184, 663
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 912
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 537
Eco47I GGWCC 4 cut(s) 185, 290, 397, 568
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 499, 765
Eco88I CYCGRG 2 cut(s) 534, 553
EcoICRI GAGCTC 1 cut(s) 127
EcoO109I RGGNCCY 3 cut(s) 185, 290, 397
EcoRII CCWGG 3 cut(s) 244, 313, 987
EcoT14I CCWWGG 1 cut(s) 912
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 912
FaeI CATG 7 cut(s) 28, 278, 385, 644, 649, 916, 961
FalI AAGNNNNNCTT 2 cut(s) 933, 965
FaqI GGGAC 6 cut(s) 198, 383, 444, 524, 536, 806
FatI CATG 7 cut(s) 24, 274, 381, 640, 645, 912, 957
FauI CCCGC 1 cut(s) 481
FbaI TGATCA 1 cut(s) 952
Fnu4HI GCNGC 4 cut(s) 133, 306, 586, 843
FokI GGATG 4 cut(s) 122, 186, 212, 731
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 4 cut(s) 133, 306, 586, 843
FspBI CTAG 1 cut(s) 548
GluI GCNGC 4 cut(s) 133, 306, 586, 843
HaeIII GGCC 1 cut(s) 890
HapII CCGG 2 cut(s) 146, 554
Hin1II CATG 7 cut(s) 28, 278, 385, 644, 649, 916, 961
HincII GTYRAC 1 cut(s) 1002
HindII GTYRAC 1 cut(s) 1002
HinfI GANTC 1 cut(s) 519
HpaI GTTAAC 1 cut(s) 1002
HpaII CCGG 2 cut(s) 146, 554
HphI GGTGA 4 cut(s) 106, 424, 462, 736
Hpy166II GTNNAC 3 cut(s) 571, 855, 1002
Hpy188I TCNGA 6 cut(s) 394, 518, 528, 629, 782, 902
Hpy188III TCNNGA 4 cut(s) 183, 229, 341, 950
Hpy8I GTNNAC 3 cut(s) 571, 855, 1002
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 740
HpyCH4III ACNGT 3 cut(s) 94, 818, 852
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 5 cut(s) 113, 132, 305, 612, 763
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 48, 594, 842
HpyF3I CTNAG 3 cut(s) 393, 527, 1005
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 7 cut(s) 28, 278, 385, 644, 649, 916, 961
KflI GGGWCCC 1 cut(s) 185
Ksp22I TGATCA 1 cut(s) 952
KspAI GTTAAC 1 cut(s) 1002
Kzo9I GATC 3 cut(s) 387, 601, 952
LguI GCTCTTC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 4 cut(s) 144, 317, 597, 854
LweI GCATC 2 cut(s) 100, 164
MabI ACCWGGT 1 cut(s) 987
MaeI CTAG 1 cut(s) 548
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 237, 412
MalI GATC 3 cut(s) 389, 603, 954
MboI GATC 3 cut(s) 387, 601, 952
MboII GAAGA 9 cut(s) 11, 62, 133, 171, 281, 360, 680, 950, 953
MflI RGATCY 2 cut(s) 387, 601
MhlI GDGCHC 3 cut(s) 129, 379, 541
MlsI TGGCCA 1 cut(s) 890
MluCI AATT 6 cut(s) 44, 500, 620, 677, 691, 896
MluNI TGGCCA 1 cut(s) 890
MlyI GAGTC 1 cut(s) 528
MmeI TCCRAC 1 cut(s) 607
Mox20I TGGCCA 1 cut(s) 890
MroXI GAANNNNTTC 1 cut(s) 945
MscI TGGCCA 1 cut(s) 890
MseI TTAA 4 cut(s) 47, 483, 632, 1001
MslI CAYNNNNRTG 2 cut(s) 27, 578
Msp20I TGGCCA 1 cut(s) 890
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 2 cut(s) 146, 554
MspR9I CCNGG 6 cut(s) 146, 246, 315, 554, 555, 989
Mva1269I GAATGC 1 cut(s) 838
MvaI CCWGG 3 cut(s) 246, 315, 989
MwoI GCNNNNNNNGC 4 cut(s) 39, 48, 594, 842
NciI CCSGG 3 cut(s) 146, 554, 555
NcoI CCATGG 1 cut(s) 912
NdeII GATC 3 cut(s) 387, 601, 952
NlaIII CATG 7 cut(s) 28, 278, 385, 644, 649, 916, 961
NlaIV GGNNCC 5 cut(s) 186, 187, 291, 319, 399
NmuCI GTSAC 2 cut(s) 237, 412
PciSI GCTCTTC 1 cut(s) 184
PctI GAATGC 1 cut(s) 838
PdmI GAANNNNTTC 1 cut(s) 945
PflMI CCANNNNNTGG 1 cut(s) 646
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 4 cut(s) 134, 307, 587, 844
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
PpuMI RGGWCCY 3 cut(s) 185, 290, 397
Psp124BI GAGCTC 1 cut(s) 129
Psp5II RGGWCCY 3 cut(s) 185, 290, 397
Psp6I CCWGG 3 cut(s) 244, 313, 987
PspGI CCWGG 3 cut(s) 244, 313, 987
PspN4I GGNNCC 5 cut(s) 186, 187, 291, 319, 399
PspPI GGNCC 4 cut(s) 185, 290, 397, 568
PspPPI RGGWCCY 3 cut(s) 185, 290, 397
PsrI GAACNNNNNNTAC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 387, 601
RseI CAYNNNNRTG 2 cut(s) 27, 578
SacI GAGCTC 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 184
SaqAI TTAA 4 cut(s) 47, 483, 632, 1001
SatI GCNGC 4 cut(s) 133, 306, 586, 843
Sau3AI GATC 3 cut(s) 387, 601, 952
Sau96I GGNCC 4 cut(s) 185, 290, 397, 568
SchI GAGTC 1 cut(s) 528
ScrFI CCNGG 6 cut(s) 146, 246, 315, 554, 555, 989
SduI GDGCHC 3 cut(s) 129, 379, 541
SexAI ACCWGGT 1 cut(s) 987
SfaNI GCATC 2 cut(s) 100, 164
SfcI CTRYAG 2 cut(s) 102, 130
SinI GGWCC 4 cut(s) 185, 290, 397, 568
SmaI CCCGGG 1 cut(s) 555
SmiMI CAYNNNNRTG 2 cut(s) 27, 578
Sse9I AATT 6 cut(s) 44, 500, 620, 677, 691, 896
SsiI CCGC 3 cut(s) 33, 164, 474
SspMI CTAG 1 cut(s) 548
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 6 cut(s) 144, 244, 313, 552, 553, 987
StyI CCWWGG 1 cut(s) 912
TaaI ACNGT 3 cut(s) 94, 818, 852
TaiI ACGT 1 cut(s) 239
TaqI TCGA 3 cut(s) 89, 264, 738
TasI AATT 6 cut(s) 44, 500, 620, 677, 691, 896
Tru1I TTAA 4 cut(s) 47, 483, 632, 1001
Tru9I TTAA 4 cut(s) 47, 483, 632, 1001
TscAI CASTG 2 cut(s) 246, 862
TseFI GTSAC 2 cut(s) 237, 412
TseI GCWGC 4 cut(s) 132, 305, 585, 842
Tsp45I GTSAC 2 cut(s) 237, 412
TspDTI ATGAA 6 cut(s) 41, 282, 289, 353, 501, 970
TspGWI ACGGA 1 cut(s) 731
TspMI CCCGGG 1 cut(s) 553
TspRI CASTG 2 cut(s) 246, 862
Van91I CCANNNNNTGG 1 cut(s) 646
VpaK11BI GGWCC 4 cut(s) 185, 290, 397, 568
XapI RAATTY 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmaI CCCGGG 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 945
XspI CTAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.