Rh6BG137200

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000342
Physical Location & Seq
Forward (+)
21945400 .. 21948176
2777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG137200.1

Sequence Viewer

Length: 876 bp
ATGAACCAAACAGAAAGAGAAAACCAATCAAAAACATTAGAGATAATGGAGGTAGAGCAAGTTCTTCACATGAATGGCGGAGATGGCAAAACAAGCTACGCAAACCACTCACTTCTTCAAAGAGCTGTGATTTCGACGGTGAAGCCTATTGTGGATGCAACCATAGAGGAGCTCTGCAGCACTCTCTTCCCGGAGTGTCTGAAAATAGCAGACTTGGGATGCTCTTCGGGGCCCAATACCCTACTGGTAGTATCAGACATCATAGCCAACATCCAGAACACGTTTCGAAAGCTCAACCTTCCCCCGCCATCGCTTCAAGCATTCTTGAATGACCTTCCCCGGAACGATTTCAACACGGTGTTCAGGTCACTGCCTGGCTTCTATAACAAGCTCGATGAAGAACATGAGAACAAGTCGGGTCCTTGTTTCATTGCAGCAATGCCCGGTTCCTTTTATGGGAGGCTCTTTCCTGACAACTCTCTCCACTTTGTTCATTCTTCCTATGCTCTCATGTGGATCTCTGAGGTCCCAAAAGGTTTGGTAACGAAAGGAGGAGAGGGACTGAACAAGGGGAATATATATATAGCCAAGACAAGCTCACCCGCTGTGTTTAATGAATACTTTGAGCAATTCAAAAGGGACTTCACAGTCTTTCTGAGGTCTCGGGCACAAGAGCTAGTCCCGGGAGGTAGTATGGTCCTCACAACAATGGGCAGCATAAATAGCAAAGATCCCCTCTGCATTTGGGAATTTGTCGGATTAAAACTCCATGACATGGTTTTAGATGTATGCATGTGCCAGGCATTAGATTTCTTCATTTTGGATACGATAATCTTTCTCTCACTAACATACTATGATGATTTTTTCAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

291

Amino Acids

32.68

Weight (kDa)

5.18

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 54 - 262 1.8e-84 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 775
AciI CCGC 3 cut(s) 78, 305, 603
AclWI GGATC 2 cut(s) 524, 725
AcsI RAATTY 1 cut(s) 749
AfiI CCNNNNNNNGG 2 cut(s) 456, 775
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 5 cut(s) 119, 317, 328, 352, 634
AjnI CCWGG 2 cut(s) 373, 798
AluBI AGCT 7 cut(s) 96, 125, 172, 292, 391, 597, 676
AluI AGCT 7 cut(s) 96, 125, 172, 292, 391, 597, 676
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 666
AlwI GGATC 2 cut(s) 524, 725
Ama87I CYCGRG 2 cut(s) 663, 682
AoxI GGCC 1 cut(s) 230
ApaI GGGCCC 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 177, 434, 714
ApoI RAATTY 1 cut(s) 749
Asp700I GAANNNNTTC 1 cut(s) 347
AspS9I GGNCC 5 cut(s) 230, 231, 419, 526, 697
AsuC2I CCSGG 5 cut(s) 191, 340, 444, 683, 684
AsuHPI GGTGA 2 cut(s) 151, 591
AsuII TTCGAA 1 cut(s) 286
AvaI CYCGRG 2 cut(s) 663, 682
AvaII GGWCC 3 cut(s) 419, 526, 697
BaeGI GKGCMC 2 cut(s) 234, 670
BanII GRGCYC 2 cut(s) 174, 234
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 189, 446, 726
BccI CCATC 2 cut(s) 77, 316
BciT130I CCWGG 2 cut(s) 375, 800
BciVI GTATCC 1 cut(s) 817
BcnI CCSGG 5 cut(s) 191, 340, 444, 683, 684
BcoDI GTCTC 1 cut(s) 666
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 175
BfuI GTATCC 1 cut(s) 817
BisI GCNGC 3 cut(s) 178, 435, 715
BlsI GCNGC 3 cut(s) 179, 436, 716
Bme1390I CCNGG 7 cut(s) 191, 340, 375, 444, 683, 684, 800
Bme18I GGWCC 3 cut(s) 419, 526, 697
BmeT110I CYCGRG 2 cut(s) 663, 682
BmgT120I GGNCC 5 cut(s) 230, 231, 419, 526, 697
BmiI GGNNCC 5 cut(s) 231, 232, 420, 448, 528
BmrFI CCNGG 7 cut(s) 191, 340, 375, 444, 683, 684, 800
BmsI GCATC 2 cut(s) 145, 209
Bpu14I TTCGAA 1 cut(s) 286
BpuMI CCSGG 5 cut(s) 191, 340, 444, 683, 684
BsaI GGTCTC 1 cut(s) 666
BsaJI CCNNGG 2 cut(s) 338, 682
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 775
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 2 cut(s) 429, 444
BseBI CCWGG 2 cut(s) 375, 800
BseDI CCNNGG 2 cut(s) 338, 682
BseGI GGATG 3 cut(s) 160, 224, 270
BseLI CCNNNNNNNGG 2 cut(s) 456, 775
BseMI GCAATG 2 cut(s) 429, 444
BseMII CTCAG 2 cut(s) 513, 647
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 2 cut(s) 182, 567
BseSI GKGCMC 2 cut(s) 234, 670
BseXI GCAGC 3 cut(s) 189, 446, 726
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 2 cut(s) 663, 682
BsiSI CCGG 4 cut(s) 191, 340, 444, 683
BslFI GGGAC 4 cut(s) 512, 573, 653, 665
BslI CCNNNNNNNGG 2 cut(s) 456, 775
BsmAI GTCTC 1 cut(s) 666
BsmFI GGGAC 4 cut(s) 512, 573, 653, 665
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 1 cut(s) 232
Bso31I GGTCTC 1 cut(s) 666
BsoBI CYCGRG 2 cut(s) 663, 682
Bsp119I TTCGAA 1 cut(s) 286
Bsp120I GGGCCC 1 cut(s) 230
Bsp1286I GDGCHC 3 cut(s) 174, 234, 670
Bsp143I GATC 2 cut(s) 516, 730
BspACI CCGC 3 cut(s) 78, 305, 603
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 514, 648
BspLI GGNNCC 5 cut(s) 231, 232, 420, 448, 528
BspMAI CTGCAG 1 cut(s) 179
BspPI GGATC 2 cut(s) 524, 725
BspQI GCTCTTC 1 cut(s) 229
BspT104I TTCGAA 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 666
BsrDI GCAATG 2 cut(s) 429, 444
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 338, 682
BssMI GATC 2 cut(s) 516, 730
Bst2UI CCWGG 2 cut(s) 375, 800
Bst4CI ACNGT 3 cut(s) 139, 358, 649
Bst6I CTCTTC 2 cut(s) 191, 229
BstBI TTCGAA 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 522, 656
BstF5I GGATG 3 cut(s) 160, 224, 270
BstKTI GATC 2 cut(s) 519, 733
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 2 cut(s) 516, 730
BstMWI GCNNNNNNNGC 3 cut(s) 84, 93, 723
BstNI CCWGG 2 cut(s) 375, 800
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 7 cut(s) 189, 338, 373, 442, 681, 682, 798
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 2 cut(s) 234, 670
BstV1I GCAGC 3 cut(s) 189, 446, 726
BstX2I RGATCY 2 cut(s) 516, 730
BstYI RGATCY 2 cut(s) 516, 730
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 160, 224, 270
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 368
Cfr13I GGNCC 5 cut(s) 230, 231, 419, 526, 697
Cfr9I CCCGGG 1 cut(s) 682
CviAII CATG 6 cut(s) 70, 404, 511, 770, 775, 793
DdeI CTNAG 2 cut(s) 522, 656
DpnI GATC 2 cut(s) 518, 732
DpnII GATC 2 cut(s) 516, 730
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 2 cut(s) 191, 229
EarI CTCTTC 2 cut(s) 191, 229
EciI GGCGGA 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 2 cut(s) 174, 234
Eco31I GGTCTC 1 cut(s) 666
Eco47I GGWCC 3 cut(s) 419, 526, 697
Eco53kI GAGCTC 1 cut(s) 172
Eco88I CYCGRG 2 cut(s) 663, 682
EcoICRI GAGCTC 1 cut(s) 172
EcoO109I RGGNCCY 3 cut(s) 230, 419, 526
EcoRII CCWGG 2 cut(s) 373, 798
EcoT22I ATGCAT 1 cut(s) 794
EcoT38I GRGCYC 2 cut(s) 174, 234
FaeI CATG 6 cut(s) 73, 407, 514, 773, 778, 796
FaqI GGGAC 4 cut(s) 512, 573, 653, 665
FatI CATG 6 cut(s) 69, 403, 510, 769, 774, 792
FauI CCCGC 2 cut(s) 312, 610
Fnu4HI GCNGC 3 cut(s) 178, 435, 715
FokI GGATG 3 cut(s) 167, 231, 257
FriOI GRGCYC 2 cut(s) 174, 234
Fsp4HI GCNGC 3 cut(s) 178, 435, 715
FspBI CTAG 1 cut(s) 677
GluI GCNGC 3 cut(s) 178, 435, 715
HaeIII GGCC 1 cut(s) 232
HapII CCGG 4 cut(s) 191, 340, 444, 683
Hin1II CATG 6 cut(s) 73, 407, 514, 773, 778, 796
HpaII CCGG 4 cut(s) 191, 340, 444, 683
HphI GGTGA 2 cut(s) 151, 591
Hpy188I TCNGA 5 cut(s) 201, 256, 523, 657, 758
Hpy188III TCNNGA 3 cut(s) 274, 325, 470
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 308, 344
HpyCH4III ACNGT 3 cut(s) 139, 358, 649
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 5 cut(s) 158, 177, 434, 741, 792
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 93, 723
HpyF3I CTNAG 2 cut(s) 522, 656
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 6 cut(s) 73, 407, 514, 773, 778, 796
Kzo9I GATC 2 cut(s) 516, 730
LguI GCTCTTC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 3 cut(s) 189, 446, 726
LweI GCATC 2 cut(s) 145, 209
MaeI CTAG 1 cut(s) 677
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 366, 541
MalI GATC 2 cut(s) 518, 732
MboI GATC 2 cut(s) 516, 730
MboII GAAGA 7 cut(s) 56, 107, 178, 216, 410, 489, 805
MflI RGATCY 2 cut(s) 516, 730
MhlI GDGCHC 3 cut(s) 174, 234, 670
MluCI AATT 2 cut(s) 629, 749
MmeI TCCRAC 1 cut(s) 736
Mph1103I ATGCAT 1 cut(s) 794
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 2 cut(s) 612, 761
MslI CAYNNNNRTG 2 cut(s) 72, 707
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 4 cut(s) 191, 340, 444, 683
MspR9I CCNGG 7 cut(s) 191, 340, 375, 444, 683, 684, 800
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 2 cut(s) 375, 800
MwoI GCNNNNNNNGC 3 cut(s) 84, 93, 723
NciI CCSGG 5 cut(s) 191, 340, 444, 683, 684
NdeII GATC 2 cut(s) 516, 730
NlaIII CATG 6 cut(s) 73, 407, 514, 773, 778, 796
NlaIV GGNNCC 5 cut(s) 231, 232, 420, 448, 528
NmuCI GTSAC 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 794
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 229
PctI GAATGC 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 347
PflMI CCANNNNNTGG 1 cut(s) 775
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 3 cut(s) 179, 436, 716
PpuMI RGGWCCY 2 cut(s) 419, 526
Psp124BI GAGCTC 1 cut(s) 174
Psp5II RGGWCCY 2 cut(s) 419, 526
Psp6I CCWGG 2 cut(s) 373, 798
PspGI CCWGG 2 cut(s) 373, 798
PspN4I GGNNCC 5 cut(s) 231, 232, 420, 448, 528
PspOMI GGGCCC 1 cut(s) 230
PspPI GGNCC 5 cut(s) 230, 231, 419, 526, 697
PspPPI RGGWCCY 2 cut(s) 419, 526
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
PstI CTGCAG 1 cut(s) 179
PsuI RGATCY 2 cut(s) 516, 730
RseI CAYNNNNRTG 2 cut(s) 72, 707
SacI GAGCTC 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 612, 761
SatI GCNGC 3 cut(s) 178, 435, 715
Sau3AI GATC 2 cut(s) 516, 730
Sau96I GGNCC 5 cut(s) 230, 231, 419, 526, 697
ScrFI CCNGG 7 cut(s) 191, 340, 375, 444, 683, 684, 800
SduI GDGCHC 3 cut(s) 174, 234, 670
SfaNI GCATC 2 cut(s) 145, 209
SfcI CTRYAG 1 cut(s) 175
SfuI TTCGAA 1 cut(s) 286
SinI GGWCC 3 cut(s) 419, 526, 697
SmaI CCCGGG 1 cut(s) 684
SmiMI CAYNNNNRTG 2 cut(s) 72, 707
Sse9I AATT 2 cut(s) 629, 749
SsiI CCGC 3 cut(s) 78, 305, 603
SspMI CTAG 1 cut(s) 677
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 7 cut(s) 189, 338, 373, 442, 681, 682, 798
TaaI ACNGT 3 cut(s) 139, 358, 649
TaiI ACGT 1 cut(s) 284
TaqI TCGA 3 cut(s) 134, 286, 393
TasI AATT 2 cut(s) 629, 749
Tru1I TTAA 2 cut(s) 612, 761
Tru9I TTAA 2 cut(s) 612, 761
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 366
TseI GCWGC 3 cut(s) 177, 434, 714
Tsp45I GTSAC 1 cut(s) 366
TspDTI ATGAA 7 cut(s) 17, 86, 411, 418, 482, 630, 805
TspMI CCCGGG 1 cut(s) 682
TspRI CASTG 1 cut(s) 375
Van91I CCANNNNNTGG 1 cut(s) 775
VpaK11BI GGWCC 3 cut(s) 419, 526, 697
XapI RAATTY 1 cut(s) 749
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmaI CCCGGG 1 cut(s) 682
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 1 cut(s) 677
Zsp2I ATGCAT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.