Rorug01G0046000

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000342
Physical Location & Seq
Reverse (-)
7756972 .. 7757726
755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0046000.1

Sequence Viewer

Length: 546 bp
ATGTATTCCAAATGCGGCAATTTGGGGGCCGGAAGGCAGGTATTCAAGCTCATGGGTGATAAGCAAGACACCGTGTTATGGAACACAATGATGTCTGCCTTAGCACAGCATGGTCATGGTATAGAGGCATTGCAGATGTTTGAAGACACGGTCAGTTCAGGTGTAAAGCCAGTTATGACCACCTTGGTTGTCATTCTCAATGCTTGTAGTCATTCTGGTCTAGTGCAGGAAGGGCGTAGGATTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTGATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTCGAGCTGGATGTTTTGATGAAATCCATGGAAATACAGAGCTGGGAAGAAAAGTGGCCGAACACCTTATTGAGTTGGAGCCTCAATCTTCTGCTCCCTATGTTTTGCTTTCGAGCATATATGCTGAAGAAGACCGGCTGCATCCTCTGAAAGAGGAAATATACCCGGTTTTGAAACAGTTAGCTGACCAGATGGAAGAAGATGCTTCAGTAACTAACGCCGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

181

Amino Acids

20.06

Weight (kDa)

4.76

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 23 - 70 8.6e-08 PPR repeat family
PPR PF01535 25 - 55 4.3e-06 PPR repeat
E_motif PF20431 115 - 151 5.3e-07 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AciI CCGC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 372
AcuI CTGAAG 2 cut(s) 462, 507
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 4 cut(s) 46, 143, 247, 490
AluBI AGCT 4 cut(s) 49, 323, 358, 500
AluI AGCT 4 cut(s) 49, 323, 358, 500
AoxI GGCC 2 cut(s) 27, 372
ApeKI GCWGC 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 27
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 150, 453
BbvI GCAGC 1 cut(s) 441
BccI CCATC 1 cut(s) 502
BcnI CCSGG 1 cut(s) 482
BfaI CTAG 2 cut(s) 221, 544
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 2 cut(s) 16, 455
BlsI GCNGC 2 cut(s) 17, 456
Bme1390I CCNGG 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 28, 396
BmrFI CCNGG 1 cut(s) 482
BmsI GCATC 2 cut(s) 466, 508
BpiI GAAGAC 2 cut(s) 150, 453
Bpu10I CCTNAGC 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 183, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 183, 343
BseGI GGATG 2 cut(s) 332, 457
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 441
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 245
BshFI GGCC 2 cut(s) 29, 374
BsiSI CCGG 3 cut(s) 30, 451, 482
BslI CCNNNNNNNGG 1 cut(s) 78
BsnI GGCC 2 cut(s) 29, 374
Bsp143I GATC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 343
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 29, 374
BspLI GGNNCC 2 cut(s) 28, 396
BspMI ACCTGC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 450
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 2 cut(s) 183, 343
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 2 cut(s) 183, 343
Bst4CI ACNGT 3 cut(s) 73, 151, 495
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 2 cut(s) 332, 457
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 441
BstV2I GAAGAC 2 cut(s) 150, 453
BsuRI GGCC 2 cut(s) 29, 374
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 2 cut(s) 332, 457
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 27
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 6 cut(s) 52, 110, 116, 253, 297, 344
CviJI RGCY 9 cut(s) 29, 49, 169, 323, 358, 374, 397, 454, 500
CviKI_1 RGCY 9 cut(s) 29, 49, 169, 323, 358, 374, 397, 454, 500
DdeI CTNAG 1 cut(s) 100
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 372
Eco130I CCWWGG 2 cut(s) 183, 343
Eco57I CTGAAG 2 cut(s) 462, 507
EcoT14I CCWWGG 2 cut(s) 183, 343
EcoT22I ATGCAT 1 cut(s) 298
ErhI CCWWGG 2 cut(s) 183, 343
FaeI CATG 6 cut(s) 55, 113, 119, 256, 300, 347
FatI CATG 6 cut(s) 51, 109, 115, 252, 296, 343
Fnu4HI GCNGC 2 cut(s) 16, 455
FokI GGATG 2 cut(s) 339, 444
Fsp4HI GCNGC 2 cut(s) 16, 455
FspBI CTAG 2 cut(s) 221, 544
GluI GCNGC 2 cut(s) 16, 455
GsaI CCCAGC 1 cut(s) 362
HaeIII GGCC 2 cut(s) 29, 374
HapII CCGG 3 cut(s) 30, 451, 482
Hin1II CATG 6 cut(s) 55, 113, 119, 256, 300, 347
HpaII CCGG 3 cut(s) 30, 451, 482
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 465
Hpy188III TCNNGA 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 27, 224
HpyCH4III ACNGT 3 cut(s) 73, 151, 495
HpyCH4V TGCA 4 cut(s) 133, 226, 296, 457
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 100
Hsp92II CATG 6 cut(s) 55, 113, 119, 256, 300, 347
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 2 cut(s) 394, 415
Lsp1109I GCAGC 1 cut(s) 441
LweI GCATC 2 cut(s) 466, 508
MaeI CTAG 2 cut(s) 221, 544
MaeIII GTNAC 1 cut(s) 526
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 7 cut(s) 155, 375, 396, 455, 458, 524, 527
MluCI AATT 2 cut(s) 19, 303
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 5 cut(s) 118, 277, 408, 463, 471
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 2 cut(s) 89, 114
MspI CCGG 3 cut(s) 30, 451, 482
MspR9I CCNGG 1 cut(s) 482
MwoI GCNNNNNNNGC 1 cut(s) 232
NciI CCSGG 1 cut(s) 482
NcoI CCATGG 1 cut(s) 343
NdeII GATC 1 cut(s) 307
NlaIII CATG 6 cut(s) 55, 113, 119, 256, 300, 347
NlaIV GGNNCC 2 cut(s) 28, 396
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 300
PaeI GCATGC 1 cut(s) 300
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 2 cut(s) 17, 456
PspFI CCCAGC 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 28, 396
PspPI GGNCC 1 cut(s) 27
PsyI GACNNNGTC 1 cut(s) 149
RseI CAYNNNNRTG 2 cut(s) 89, 114
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 2 cut(s) 16, 455
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 482
SetI ASST 8 cut(s) 42, 51, 163, 185, 325, 360, 384, 502
SfaNI GCATC 2 cut(s) 466, 508
SmiMI CAYNNNNRTG 2 cut(s) 89, 114
SphI GCATGC 1 cut(s) 300
Sse9I AATT 2 cut(s) 19, 303
SsiI CCGC 1 cut(s) 15
SspMI CTAG 2 cut(s) 221, 544
StyD4I CCNGG 1 cut(s) 480
StyI CCWWGG 2 cut(s) 183, 343
TaaI ACNGT 3 cut(s) 73, 151, 495
TaqI TCGA 2 cut(s) 319, 428
TasI AATT 2 cut(s) 19, 303
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TseI GCWGC 1 cut(s) 454
TspDTI ATGAA 1 cut(s) 351
Tth111I GACNNNGTC 1 cut(s) 149
XceI RCATGY 1 cut(s) 300
XspI CTAG 2 cut(s) 221, 544
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.