RLG00000025381

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000342
Physical Location & Seq
Reverse (-)
45431039 .. 45432994
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025381

Sequence Viewer

Length: 1089 bp
ATGGAGGTGGAGCAAGTCCTTCACATGAATGGCGGAAATGGGAGAACAAGCTATGCAAACAACTCACTTCTTCAAAGAGCAGTGATTTCATGGGTGAAGCCCATTTTAGATGCAAGCATAGAGAATCTGTGTTGCGCCAACCTCCCTGCAGAGTGTTTGAGGATAGCTGACTTGGGATGTTCTTCAGGACCAAACACCCTTTTAGTCGTATCAAATGTCATAGACATGATCCAGAATATGTGTCAAAATTTGAACCGTCGACCTCCATCACTCCAAGTATTTTTGAATGATCTTCCCCAAAACGACTTTAACACAGTATTCAAATCATTGCCAGGCTTCTACAAAAAACTAGATGAAAGGAAGTGGCCGGAGCCATGCTTCATTGCAGGAATGCCCGGTTCTTTCTATGGCAGGCTCTTTCCTAAGAATTCTGTCAACTTTTTTCACTCTTCTTACTCTCTGCACTGGATCTCTAAGGTTCCAAAAGGTTTGGTAACAGGAGGACTCAACGAGGGAAACATATGCATAGCCAAGACAAGCCCACCTTATGTGTTTAATGAATACTTCGAACAATTTAAAAACGACTTCACAGTGTTTCTAAGGTCTCGTGCAGAAGAGTTGGTCCCTCAGGGTGGAATGGTCCTCACAATCAGGGGCAGCATAAACAGTCATGAACCCCACTCTATATTCGAATGTCTTGGATTGAAAATTAATGATATGGTTTTAGAGGGTTTGATTGAAAAGAAAAACTTGGACTCCTTCAATATTCCATACTACGAACCTACAATGGAGGAACTGATGGAGCTGATCAAGGCCGAAGGATCCTTTAGGTTGCAGGACCTTCAAGTTTTTAAACATGATTGGGACTCTTTTATAAAGGAAGCTGATAGTGGTCTTGATAAGAAAGCAAGGGCGGGTATATTCTCCACTCACATTAGGTCTGTGGTGGAGCCTTTTCTGGTCAGTCACTTTGGGGAGGGAGTCATGGAAGATTTGGTTCGCAGGTTCGAAAAAGATGTTCTTGATTACATGGAAAAGGAGAAGTGCCAGTCTATCGATATGGTTCTCTCCTTGACAAAGGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

363

Amino Acids

41.15

Weight (kDa)

5.49

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 39 - 360 1.5e-117 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 875
Acc36I ACCTGC 1 cut(s) 993
AccI GTMKAC 1 cut(s) 259
AciI CCGC 2 cut(s) 33, 914
AclWI GGATC 4 cut(s) 223, 476, 816, 829
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 2 cut(s) 247, 427
AcuI CTGAAG 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 632
AgsI TTSAA 8 cut(s) 74, 253, 286, 322, 706, 740, 763, 845
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 4 cut(s) 51, 167, 805, 884
AluI AGCT 4 cut(s) 51, 167, 805, 884
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 4 cut(s) 223, 476, 816, 829
AoxI GGCC 2 cut(s) 365, 813
ApeKI GCWGC 1 cut(s) 657
ApoI RAATTY 2 cut(s) 247, 427
AseI ATTAAT 1 cut(s) 711
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 4 cut(s) 188, 622, 640, 838
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 3 cut(s) 567, 690, 1008
AvaII GGWCC 4 cut(s) 188, 622, 640, 838
AxyI CCTNAGG 1 cut(s) 627
BamHI GGATCC 1 cut(s) 821
BauI CACGAG 1 cut(s) 606
BbvI GCAGC 1 cut(s) 669
BccI CCATC 2 cut(s) 274, 793
BciT130I CCWGG 1 cut(s) 333
BclI TGATCA 1 cut(s) 807
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 993
BisI GCNGC 1 cut(s) 658
BlsI GCNGC 1 cut(s) 659
Bme1390I CCNGG 2 cut(s) 333, 396
Bme18I GGWCC 4 cut(s) 188, 622, 640, 838
BmgT120I GGNCC 4 cut(s) 188, 622, 640, 838
BmiI GGNNCC 5 cut(s) 372, 480, 624, 823, 951
BmrFI CCNGG 2 cut(s) 333, 396
BmsI GCATC 1 cut(s) 100
Bpu14I TTCGAA 3 cut(s) 567, 690, 1008
BpuMI CCSGG 1 cut(s) 396
Bsa29I ATCGAT 1 cut(s) 1056
BsaI GGTCTC 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse1I ACTGG 2 cut(s) 470, 1048
Bse21I CCTNAGG 1 cut(s) 627
Bse3DI GCAATG 2 cut(s) 326, 381
BseBI CCWGG 1 cut(s) 333
BseCI ATCGAT 1 cut(s) 1056
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 2 cut(s) 326, 381
BseMII CTCAG 1 cut(s) 641
BseNI ACTGG 2 cut(s) 470, 1048
BseXI GCAGC 1 cut(s) 669
BsgI GTGCAG 2 cut(s) 446, 630
BshFI GGCC 2 cut(s) 367, 815
BshVI ATCGAT 1 cut(s) 1056
BsiSI CCGG 2 cut(s) 368, 396
BslFI GGGAC 2 cut(s) 608, 878
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 1 cut(s) 609
BsmFI GGGAC 2 cut(s) 608, 878
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 2 cut(s) 367, 815
Bso31I GGTCTC 1 cut(s) 609
Bsp119I TTCGAA 3 cut(s) 567, 690, 1008
Bsp143I GATC 5 cut(s) 228, 289, 468, 807, 821
BspACI CCGC 2 cut(s) 33, 914
BspANI GGCC 2 cut(s) 367, 815
BspCNI CTCAG 1 cut(s) 640
BspDI ATCGAT 1 cut(s) 1056
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 5 cut(s) 372, 480, 624, 823, 951
BspMAI CTGCAG 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 993
BspPI GGATC 4 cut(s) 223, 476, 816, 829
BspT104I TTCGAA 3 cut(s) 567, 690, 1008
BspTNI GGTCTC 1 cut(s) 609
BsrDI GCAATG 2 cut(s) 326, 381
BsrI ACTGG 2 cut(s) 470, 1048
BssMI GATC 5 cut(s) 228, 289, 468, 807, 821
BssSI CACGAG 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 4 cut(s) 257, 316, 592, 668
Bst6I CTCTTC 2 cut(s) 454, 609
BstBI TTCGAA 3 cut(s) 567, 690, 1008
BstC8I GCNNGC 2 cut(s) 115, 413
BstDEI CTNAG 4 cut(s) 423, 474, 599, 627
BstF5I GGATG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 5 cut(s) 231, 292, 471, 810, 824
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 5 cut(s) 228, 289, 468, 807, 821
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 2 cut(s) 331, 394
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 669
BstX2I RGATCY 2 cut(s) 468, 821
BstYI RGATCY 2 cut(s) 468, 821
Bsu15I ATCGAT 1 cut(s) 1056
Bsu36I CCTNAGG 1 cut(s) 627
BsuRI GGCC 2 cut(s) 367, 815
BsuTUI ATCGAT 1 cut(s) 1056
BtsCI GGATG 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 3 cut(s) 87, 463, 597
BveI ACCTGC 1 cut(s) 993
Cac8I GCNNGC 2 cut(s) 115, 413
CciI TCATGA 1 cut(s) 670
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 4 cut(s) 188, 622, 640, 838
ClaI ATCGAT 1 cut(s) 1056
CviAII CATG 8 cut(s) 25, 90, 226, 375, 671, 857, 985, 1030
DdeI CTNAG 4 cut(s) 423, 474, 599, 627
DpnI GATC 5 cut(s) 230, 291, 470, 809, 823
DpnII GATC 5 cut(s) 228, 289, 468, 807, 821
DraI TTTAAA 2 cut(s) 577, 853
EaeI YGGCCR 1 cut(s) 365
Eam1104I CTCTTC 2 cut(s) 454, 609
EarI CTCTTC 2 cut(s) 454, 609
EciI GGCGGA 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 609
Eco47I GGWCC 4 cut(s) 188, 622, 640, 838
Eco57I CTGAAG 1 cut(s) 168
Eco81I CCTNAGG 1 cut(s) 627
EcoO109I RGGNCCY 1 cut(s) 838
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 527
FaeI CATG 8 cut(s) 28, 93, 229, 378, 674, 860, 988, 1033
FalI AAGNNNNNCTT 6 cut(s) 529, 561, 734, 766, 1005, 1037
FaqI GGGAC 2 cut(s) 608, 878
FatI CATG 8 cut(s) 24, 89, 225, 374, 670, 856, 984, 1029
FauI CCCGC 1 cut(s) 907
FauNDI CATATG 1 cut(s) 521
FbaI TGATCA 1 cut(s) 807
FblI GTMKAC 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 658
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 658
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 658
HaeIII GGCC 2 cut(s) 367, 815
HapII CCGG 2 cut(s) 368, 396
HhaI GCGC 1 cut(s) 137
Hin1II CATG 8 cut(s) 28, 93, 229, 378, 674, 860, 988, 1033
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 2 cut(s) 260, 436
HindII GTYRAC 2 cut(s) 260, 436
HinfI GANTC 5 cut(s) 124, 504, 755, 866, 981
HpaII CCGG 2 cut(s) 368, 396
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 260, 436
Hpy188III TCNNGA 5 cut(s) 186, 232, 671, 896, 1022
Hpy8I GTNNAC 2 cut(s) 260, 436
Hpy99I CGWCG 1 cut(s) 261
HpyAV CCTTC 4 cut(s) 29, 769, 812, 851
HpyCH4III ACNGT 4 cut(s) 257, 316, 592, 668
HpyCH4V TGCA 8 cut(s) 56, 113, 149, 386, 463, 525, 611, 835
HpyF3I CTNAG 4 cut(s) 423, 474, 599, 627
Hsp92II CATG 8 cut(s) 28, 93, 229, 378, 674, 860, 988, 1033
HspAI GCGC 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 807
Kzo9I GATC 5 cut(s) 228, 289, 468, 807, 821
LmnI GCTCC 4 cut(s) 10, 370, 802, 949
Lsp1109I GCAGC 1 cut(s) 669
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 2 cut(s) 493, 965
MalI GATC 5 cut(s) 230, 291, 470, 809, 823
MboI GATC 5 cut(s) 228, 289, 468, 807, 821
MboII GAAGA 6 cut(s) 62, 174, 284, 441, 626, 1001
MflI RGATCY 2 cut(s) 468, 821
MluCI AATT 4 cut(s) 247, 427, 572, 708
MlyI GAGTC 4 cut(s) 498, 749, 860, 990
Mph1103I ATGCAT 1 cut(s) 527
MseI TTAA 5 cut(s) 309, 555, 576, 711, 852
MslI CAYNNNNRTG 2 cut(s) 27, 224
MspI CCGG 2 cut(s) 368, 396
MspR9I CCNGG 2 cut(s) 333, 396
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 1 cut(s) 333
NciI CCSGG 1 cut(s) 396
NdeI CATATG 1 cut(s) 521
NdeII GATC 5 cut(s) 228, 289, 468, 807, 821
NlaIII CATG 8 cut(s) 28, 93, 229, 378, 674, 860, 988, 1033
NlaIV GGNNCC 5 cut(s) 372, 480, 624, 823, 951
NmuCI GTSAC 1 cut(s) 965
NsiI ATGCAT 1 cut(s) 527
NspV TTCGAA 3 cut(s) 567, 690, 1008
PagI TCATGA 1 cut(s) 670
PctI GAATGC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 659
PleI GAGTC 4 cut(s) 498, 749, 860, 989
PpsI GAGTC 4 cut(s) 498, 749, 860, 989
PpuMI RGGWCCY 1 cut(s) 838
PshBI ATTAAT 1 cut(s) 711
PsiI TTATAA 1 cut(s) 875
Psp5II RGGWCCY 1 cut(s) 838
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 5 cut(s) 372, 480, 624, 823, 951
PspPI GGNCC 4 cut(s) 188, 622, 640, 838
PspPPI RGGWCCY 1 cut(s) 838
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 2 cut(s) 468, 821
RseI CAYNNNNRTG 2 cut(s) 27, 224
SalI GTCGAC 1 cut(s) 258
SaqAI TTAA 5 cut(s) 309, 555, 576, 711, 852
SatI GCNGC 1 cut(s) 658
Sau3AI GATC 5 cut(s) 228, 289, 468, 807, 821
Sau96I GGNCC 4 cut(s) 188, 622, 640, 838
SchI GAGTC 4 cut(s) 498, 749, 860, 990
ScrFI CCNGG 2 cut(s) 333, 396
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 147
SfuI TTCGAA 3 cut(s) 567, 690, 1008
SinI GGWCC 4 cut(s) 188, 622, 640, 838
SmiMI CAYNNNNRTG 2 cut(s) 27, 224
Sse9I AATT 4 cut(s) 247, 427, 572, 708
SsiI CCGC 2 cut(s) 33, 914
SspI AATATT 1 cut(s) 766
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 2 cut(s) 331, 394
TaaI ACNGT 4 cut(s) 257, 316, 592, 668
TaqI TCGA 5 cut(s) 259, 567, 690, 1008, 1056
TasI AATT 4 cut(s) 247, 427, 572, 708
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 5 cut(s) 309, 555, 576, 711, 852
Tru9I TTAA 5 cut(s) 309, 555, 576, 711, 852
TscAI CASTG 3 cut(s) 87, 470, 597
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 1 cut(s) 657
Tsp45I GTSAC 1 cut(s) 965
TspDTI ATGAA 6 cut(s) 41, 78, 369, 370, 573, 687
TspRI CASTG 3 cut(s) 87, 470, 597
VpaK11BI GGWCC 4 cut(s) 188, 622, 640, 838
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 2 cut(s) 247, 427
XmiI GTMKAC 1 cut(s) 259
XspI CTAG 1 cut(s) 350
Zsp2I ATGCAT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.