MD10G1071000.v1.1

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000342
Physical Location & Seq
Reverse (-)
9837892 .. 9838922
1031 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1071000.v1.1.491

Sequence Viewer

Length: 759 bp
ATGGAGGTAGAGCAAGTGCTTCACATGAATGGAGGAATTGGGAAAACAAGCTATGCAACCAACTCTCTACTTCAAAGAGCTGTGATTTCGATGGTGAAGCCCATAGTTAAGGCAAGCATAGAGCAGCTTTGCAGCAAACTCTTCTCTGACTGTTTGAAAATAGCAGACTTGGGATGCTCTTCCGGACCCAACACCCTTTTGGCGGTATCAGATATCATACACAACATCCATGCCACCTTCCAAAAACTGAACCGTCCATCTCCTTCACTCCAAGCCTTCTTGAATGATCTTCCCGGGAACGATTTCAACACTGTGTTCAGGTCATTGCCAGGGTTCTACAAGAAACTTGAGGAAGAACAGAAGTTGGGGCCATGTTTCATTACTGCAATGCCTGGTTCTTTCTATGGCAGGCTCTTTCCAAACAATTCTCTACACTTTGTTCACTCTAATTATGCCCTTATGTGGATCTCTGAGGCTCCAAAAGGTTTGATTACCAGGGAAGGAGAGGGACTAAACAAGAAGAACATATGTATAGCAAAAACAAGCCCATATGCTGTGTATAAGTTGTATGTGGAGCAATTCAAAAAGGACTTCACAGTGTTTTTGAGGTCACGAGCAGAAGAGCTGGTCCCCGGAGGAAGTATGGTCCTCACCACAATGGGCAGCATAAAGAGCCATGACCCACTTTGCATTTGGGAAGTTGTCGGACTCAAACTCAATGATATGGTTTTAGAGGTAATGTGTGGCCTAGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

253

Amino Acids

27.96

Weight (kDa)

8.11

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 40 - 245 3.6e-83 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 182
AciI CCGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 202, 462
AgsI TTSAA 5 cut(s) 74, 157, 283, 307, 583
AjnI CCWGG 3 cut(s) 328, 391, 494
AluBI AGCT 4 cut(s) 51, 80, 127, 625
AluI AGCT 4 cut(s) 51, 80, 127, 625
AlwI GGATC 1 cut(s) 473
Ama87I CYCGRG 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 182
AoxI GGCC 2 cut(s) 368, 745
ApeKI GCWGC 3 cut(s) 124, 132, 663
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 4 cut(s) 185, 368, 628, 646
AsuC2I CCSGG 3 cut(s) 294, 295, 633
AsuHPI GGTGA 2 cut(s) 106, 643
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 3 cut(s) 185, 628, 646
BauI CACGAG 1 cut(s) 612
BbvI GCAGC 3 cut(s) 136, 144, 675
BccI CCATC 2 cut(s) 85, 265
BciT130I CCWGG 3 cut(s) 330, 393, 496
BcnI CCSGG 3 cut(s) 294, 295, 633
BfaI CTAG 1 cut(s) 749
BisI GCNGC 3 cut(s) 125, 133, 664
BlsI GCNGC 3 cut(s) 126, 134, 665
Bme1390I CCNGG 6 cut(s) 294, 295, 330, 393, 496, 633
Bme18I GGWCC 3 cut(s) 185, 628, 646
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 4 cut(s) 185, 368, 628, 646
BmiI GGNNCC 4 cut(s) 187, 369, 477, 630
BmrFI CCNGG 6 cut(s) 294, 295, 330, 393, 496, 633
BmsI GCATC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 3 cut(s) 294, 295, 633
BsaJI CCNNGG 4 cut(s) 293, 329, 495, 631
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 462
Bse3DI GCAATG 2 cut(s) 323, 393
BseAI TCCGGA 1 cut(s) 182
BseBI CCWGG 3 cut(s) 330, 393, 496
BseDI CCNNGG 4 cut(s) 293, 329, 495, 631
BseGI GGATG 2 cut(s) 179, 225
BseLI CCNNNNNNNGG 2 cut(s) 202, 462
BseMI GCAATG 2 cut(s) 323, 393
BseMII CTCAG 1 cut(s) 462
BseXI GCAGC 3 cut(s) 136, 144, 675
BshFI GGCC 2 cut(s) 370, 747
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 3 cut(s) 183, 294, 633
BslFI GGGAC 2 cut(s) 522, 614
BslI CCNNNNNNNGG 2 cut(s) 202, 462
BsmFI GGGAC 2 cut(s) 522, 614
BsnI GGCC 2 cut(s) 370, 747
BsoBI CYCGRG 1 cut(s) 293
Bsp13I TCCGGA 1 cut(s) 182
Bsp143I GATC 2 cut(s) 286, 465
BspACI CCGC 1 cut(s) 203
BspANI GGCC 2 cut(s) 370, 747
BspCNI CTCAG 1 cut(s) 463
BspEI TCCGGA 1 cut(s) 182
BspLI GGNNCC 4 cut(s) 187, 369, 477, 630
BspPI GGATC 1 cut(s) 473
BspQI GCTCTTC 2 cut(s) 184, 615
BsrDI GCAATG 2 cut(s) 323, 393
BssECI CCNNGG 4 cut(s) 293, 329, 495, 631
BssMI GATC 2 cut(s) 286, 465
BssSI CACGAG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 3 cut(s) 330, 393, 496
Bst4CI ACNGT 4 cut(s) 152, 254, 313, 598
Bst6I CTCTTC 3 cut(s) 146, 184, 615
BstC8I GCNNGC 2 cut(s) 115, 410
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 179, 225
BstKTI GATC 2 cut(s) 289, 468
BstMBI GATC 2 cut(s) 286, 465
BstMWI GCNNNNNNNGC 1 cut(s) 672
BstNI CCWGG 3 cut(s) 330, 393, 496
BstSCI CCNGG 6 cut(s) 292, 293, 328, 391, 494, 631
BstV1I GCAGC 3 cut(s) 136, 144, 675
BstX2I RGATCY 1 cut(s) 465
BstYI RGATCY 1 cut(s) 465
BsuRI GGCC 2 cut(s) 370, 747
BtsCI GGATG 2 cut(s) 179, 225
BtsIMutI CAGTG 2 cut(s) 309, 603
Cac8I GCNNGC 2 cut(s) 115, 410
Cfr13I GGNCC 4 cut(s) 185, 368, 628, 646
Cfr9I CCCGGG 1 cut(s) 293
CviAII CATG 4 cut(s) 25, 230, 372, 677
DdeI CTNAG 1 cut(s) 471
DpnI GATC 2 cut(s) 288, 467
DpnII GATC 2 cut(s) 286, 465
Eam1104I CTCTTC 3 cut(s) 146, 184, 615
EarI CTCTTC 3 cut(s) 146, 184, 615
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 3 cut(s) 185, 628, 646
Eco88I CYCGRG 1 cut(s) 293
EcoRII CCWGG 3 cut(s) 328, 391, 494
EcoRV GATATC 1 cut(s) 214
FaeI CATG 4 cut(s) 28, 233, 375, 680
FaqI GGGAC 2 cut(s) 522, 614
FatI CATG 4 cut(s) 24, 229, 371, 676
FauNDI CATATG 2 cut(s) 527, 550
Fnu4HI GCNGC 3 cut(s) 125, 133, 664
FokI GGATG 2 cut(s) 186, 212
Fsp4HI GCNGC 3 cut(s) 125, 133, 664
FspBI CTAG 1 cut(s) 749
GluI GCNGC 3 cut(s) 125, 133, 664
HaeIII GGCC 2 cut(s) 370, 747
HapII CCGG 3 cut(s) 183, 294, 633
Hin1II CATG 4 cut(s) 28, 233, 375, 680
HinfI GANTC 1 cut(s) 708
HpaII CCGG 3 cut(s) 183, 294, 633
HphI GGTGA 2 cut(s) 106, 643
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 4 cut(s) 148, 211, 472, 707
Hpy188III TCNNGA 3 cut(s) 183, 280, 612
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 4 cut(s) 247, 273, 286, 494
HpyCH4III ACNGT 4 cut(s) 152, 254, 313, 598
HpyCH4V TGCA 4 cut(s) 56, 132, 386, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 672
HpyF3I CTNAG 1 cut(s) 471
Hsp92II CATG 4 cut(s) 28, 233, 375, 680
Kpn2I TCCGGA 1 cut(s) 182
Kzo9I GATC 2 cut(s) 286, 465
LguI GCTCTTC 2 cut(s) 184, 615
LmnI GCTCC 2 cut(s) 481, 574
Lsp1109I GCAGC 3 cut(s) 136, 144, 675
LweI GCATC 1 cut(s) 164
MaeI CTAG 1 cut(s) 749
MaeIII GTNAC 1 cut(s) 609
MalI GATC 2 cut(s) 288, 467
MboI GATC 2 cut(s) 286, 465
MboII GAAGA 6 cut(s) 133, 171, 281, 365, 532, 632
MflI RGATCY 1 cut(s) 465
MluCI AATT 5 cut(s) 36, 424, 448, 578, 754
MlyI GAGTC 1 cut(s) 702
MmeI TCCRAC 1 cut(s) 685
MnlI CCTC 8 cut(s) 26, 343, 466, 499, 600, 629, 659, 727
MroI TCCGGA 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 2 cut(s) 108, 757
MslI CAYNNNNRTG 2 cut(s) 27, 656
MspI CCGG 3 cut(s) 183, 294, 633
MspR9I CCNGG 6 cut(s) 294, 295, 330, 393, 496, 633
MvaI CCWGG 3 cut(s) 330, 393, 496
MwoI GCNNNNNNNGC 1 cut(s) 672
NciI CCSGG 3 cut(s) 294, 295, 633
NdeI CATATG 2 cut(s) 527, 550
NdeII GATC 2 cut(s) 286, 465
NlaIII CATG 4 cut(s) 28, 233, 375, 680
NlaIV GGNNCC 4 cut(s) 187, 369, 477, 630
NmuCI GTSAC 1 cut(s) 609
PciSI GCTCTTC 2 cut(s) 184, 615
PdmI GAANNNNTTC 1 cut(s) 302
PkrI GCNGC 3 cut(s) 126, 134, 665
PleI GAGTC 1 cut(s) 702
PpsI GAGTC 1 cut(s) 702
Psp6I CCWGG 3 cut(s) 328, 391, 494
PspGI CCWGG 3 cut(s) 328, 391, 494
PspN4I GGNNCC 4 cut(s) 187, 369, 477, 630
PspPI GGNCC 4 cut(s) 185, 368, 628, 646
PsuI RGATCY 1 cut(s) 465
RseI CAYNNNNRTG 2 cut(s) 27, 656
SapI GCTCTTC 2 cut(s) 184, 615
SaqAI TTAA 2 cut(s) 108, 757
SatI GCNGC 3 cut(s) 125, 133, 664
Sau3AI GATC 2 cut(s) 286, 465
Sau96I GGNCC 4 cut(s) 185, 368, 628, 646
SchI GAGTC 1 cut(s) 702
ScrFI CCNGG 6 cut(s) 294, 295, 330, 393, 496, 633
SfaNI GCATC 1 cut(s) 164
SinI GGWCC 3 cut(s) 185, 628, 646
SmaI CCCGGG 1 cut(s) 295
SmiMI CAYNNNNRTG 2 cut(s) 27, 656
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 5 cut(s) 36, 424, 448, 578, 754
SsiI CCGC 1 cut(s) 203
SspMI CTAG 1 cut(s) 749
StyD4I CCNGG 6 cut(s) 292, 293, 328, 391, 494, 631
TaaI ACNGT 4 cut(s) 152, 254, 313, 598
TaqI TCGA 1 cut(s) 89
TasI AATT 5 cut(s) 36, 424, 448, 578, 754
Tru1I TTAA 2 cut(s) 108, 757
Tru9I TTAA 2 cut(s) 108, 757
TscAI CASTG 2 cut(s) 316, 603
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 3 cut(s) 124, 132, 663
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 2 cut(s) 41, 367
TspMI CCCGGG 1 cut(s) 293
TspRI CASTG 2 cut(s) 316, 603
VpaK11BI GGWCC 3 cut(s) 185, 628, 646
XcmI CCANNNNNNNNNTGG 2 cut(s) 196, 690
XmaI CCCGGG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.